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Volumn 7, Issue 11, 2012, Pages

Exploring Pandora's Box: Potential and Pitfalls of Low Coverage Genome Surveys for Evolutionary Biology

(21)  Leese, Florian a,b   Brand, Philipp a   Rozenberg, Andrey a   Mayer, Christoph d   Agrawal, Shobhit c   Dambach, Johannes d   Dietz, Lars a   Doemel, Jana S a   Goodall Copstake, William P b   Held, Christoph c   Jackson, Jennifer A b   Lampert, Kathrin P a   Linse, Katrin b   Macher, Jan N a   Nolzen, Jennifer a   Raupach, Michael J e   Rivera, Nicole T f   Schubart, Christoph D f   Striewski, Sebastian a   Tollrian, Ralph a   more..


Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; RIBOSOME RNA;

EID: 84869854759     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0049202     Document Type: Article
Times cited : (27)

References (82)
  • 1
    • 36849073678 scopus 로고    scopus 로고
    • Sequencing breakthroughs for genomic ecology and evolutionary biology
    • Hudson M, (2008) Sequencing breakthroughs for genomic ecology and evolutionary biology. Mol Ecol Resour 8: 3-17.
    • (2008) Mol Ecol Resour , vol.8 , pp. 3-17
    • Hudson, M.1
  • 2
    • 79959300621 scopus 로고    scopus 로고
    • Applications of next generation sequencing in molecular ecology of non-model organisms
    • Ekblom R, Galindo J, (2011) Applications of next generation sequencing in molecular ecology of non-model organisms. Heredity 107: 1-15.
    • (2011) Heredity , vol.107 , pp. 1-15
    • Ekblom, R.1    Galindo, J.2
  • 3
    • 65449133181 scopus 로고    scopus 로고
    • Multilocus phylogeography and phylogenetics using sequence-based markers
    • Brito P, Edwards S, (2009) Multilocus phylogeography and phylogenetics using sequence-based markers. Genetica 135: 439-455.
    • (2009) Genetica , vol.135 , pp. 439-455
    • Brito, P.1    Edwards, S.2
  • 4
    • 80054073468 scopus 로고    scopus 로고
    • Rise of the machines - recommendations for ecologists when using next generation sequencing for microsatellite development
    • Gardner M, Fitch A, Bertozzi T, Lowe A, (2011) Rise of the machines- recommendations for ecologists when using next generation sequencing for microsatellite development. Mol Ecol Resour 11: 1093-1101.
    • (2011) Mol Ecol Resour , vol.11 , pp. 1093-1101
    • Gardner, M.1    Fitch, A.2    Bertozzi, T.3    Lowe, A.4
  • 5
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • Elshire R, Glaubitz J, Sun Q, Poland J, Kawamoto K, et al. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS ONE 6: 19379.
    • (2011) PLoS ONE , vol.6 , pp. 19379
    • Elshire, R.1    Glaubitz, J.2    Sun, Q.3    Poland, J.4    Kawamoto, K.5
  • 6
    • 77649219524 scopus 로고    scopus 로고
    • Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags
    • Hohenlohe P, Bassham S, Etter P, Stiffler N, Johnson E, et al. (2010) Population genomics of parallel adaptation in threespine stickleback using sequenced RAD tags. PLoS Genet 6: 1000862.
    • (2010) PLoS Genet , vol.6 , pp. 1000862
    • Hohenlohe, P.1    Bassham, S.2    Etter, P.3    Stiffler, N.4    Johnson, E.5
  • 8
    • 84855194204 scopus 로고    scopus 로고
    • Targeted Amplicon Sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics
    • Bybee S, Bracken-Grissom H, Haynes B, Hermansen R, Byers R, et al. (2011) Targeted Amplicon Sequencing (TAS): a scalable next-gen approach to multilocus, multitaxa phylogenetics. Genome Biol Evol 3: 1312-1323.
    • (2011) Genome Biol Evol , vol.3 , pp. 1312-1323
    • Bybee, S.1    Bracken-Grissom, H.2    Haynes, B.3    Hermansen, R.4    Byers, R.5
  • 9
    • 0034192091 scopus 로고    scopus 로고
    • Efficient genetic markers for population biology
    • Sunnucks P, (2000) Efficient genetic markers for population biology. Trends Ecol Evol 15: 199-203.
    • (2000) Trends Ecol Evol , vol.15 , pp. 199-203
    • Sunnucks, P.1
  • 10
    • 35448965597 scopus 로고    scopus 로고
    • Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects
    • Wägele J, Mayer C, (2007) Visualizing differences in phylogenetic information content of alignments and distinction of three classes of long-branch effects. BMC Evol Biol 7: 147.
    • (2007) BMC Evol Biol , vol.7 , pp. 147
    • Wägele, J.1    Mayer, C.2
  • 11
    • 0030983892 scopus 로고    scopus 로고
    • Launching microsatellites: a review of mutation processes and methods of phylogenetic interference
    • Goldstein D, Pollock D, (1997) Launching microsatellites: a review of mutation processes and methods of phylogenetic interference. J Hered 88: 335-342.
    • (1997) J Hered , vol.88 , pp. 335-342
    • Goldstein, D.1    Pollock, D.2
  • 13
    • 65449162673 scopus 로고    scopus 로고
    • Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing
    • Abdelkrim J, Robertson B, Stanton J, Gemmell N, (2009) Fast, cost-effective development of species-specific microsatellite markers by genomic sequencing. Biotechniques 46: 185-192.
    • (2009) Biotechniques , vol.46 , pp. 185-192
    • Abdelkrim, J.1    Robertson, B.2    Stanton, J.3    Gemmell, N.4
  • 14
    • 77949335579 scopus 로고    scopus 로고
    • Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence
    • Castoe T, Poole A, Gu W, De Koning A, Daza J, et al. (2010) Rapid identification of thousands of copperhead snake (Agkistrodon contortrix) microsatellite loci from modest amounts of 454 shotgun genome sequence. Mol Ecol Resour 10: 341-347.
    • (2010) Mol Ecol Resour , vol.10 , pp. 341-347
    • Castoe, T.1    Poole, A.2    Gu, W.3    De Koning, A.4    Daza, J.5
  • 15
    • 65449189638 scopus 로고    scopus 로고
    • Microsatellite discovery by deep sequencing of enriched genomic libraries
    • Santana Q, Coetzee M, Steenkamp E, Mlonyeni O, Hammond G, et al. (2009) Microsatellite discovery by deep sequencing of enriched genomic libraries. Biotechniques 46: 217-223.
    • (2009) Biotechniques , vol.46 , pp. 217-223
    • Santana, Q.1    Coetzee, M.2    Steenkamp, E.3    Mlonyeni, O.4    Hammond, G.5
  • 16
    • 79959250426 scopus 로고    scopus 로고
    • High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries
    • Malausa T, Gilles A, Meglécz E, Blanquart H, Duthoy S, et al. (2011) High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Mol Ecol Resour 11: 638-644.
    • (2011) Mol Ecol Resour , vol.11 , pp. 638-644
    • Malausa, T.1    Gilles, A.2    Meglécz, E.3    Blanquart, H.4    Duthoy, S.5
  • 17
    • 77957748140 scopus 로고    scopus 로고
    • Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX titanium pyrosequencing
    • Martin J, Pech N, Meglécz E, Ferreira S, Costedoat C, et al. (2010) Representativeness of microsatellite distributions in genomes, as revealed by 454 GS-FLX titanium pyrosequencing. BMC Genomics 11: 560.
    • (2010) BMC Genomics , vol.11 , pp. 560
    • Martin, J.1    Pech, N.2    Meglécz, E.3    Ferreira, S.4    Costedoat, C.5
  • 20
    • 0026300584 scopus 로고
    • Ribosomal DNA: molecular evolution and phylogenetic inference
    • Hillis D, Dixon M, (1991) Ribosomal DNA: molecular evolution and phylogenetic inference. Q Rev Biol 66: 411-453.
    • (1991) Q Rev Biol , vol.66 , pp. 411-453
    • Hillis, D.1    Dixon, M.2
  • 21
    • 42149157760 scopus 로고    scopus 로고
    • Broad phylogenomic sampling improves resolution of the animal tree of life
    • Dunn C, Hejnol A, Matus D, Pang K, Browne W, et al. (2008) Broad phylogenomic sampling improves resolution of the animal tree of life. Nature 452: 745-749.
    • (2008) Nature , vol.452 , pp. 745-749
    • Dunn, C.1    Hejnol, A.2    Matus, D.3    Pang, K.4    Browne, W.5
  • 22
    • 52549130466 scopus 로고    scopus 로고
    • Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species
    • Gissi C, Iannelli F, Pesole G, (2008) Evolution of the mitochondrial genome of Metazoa as exemplified by comparison of congeneric species. Heredity 101: 301-320.
    • (2008) Heredity , vol.101 , pp. 301-320
    • Gissi, C.1    Iannelli, F.2    Pesole, G.3
  • 23
    • 77956392555 scopus 로고    scopus 로고
    • Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda
    • Rota-Stabelli O, Kayal E, Gleeson D, Daub J, Boore J, et al. (2010) Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda. Genome Biol Evol 2: 425-440.
    • (2010) Genome Biol Evol , vol.2 , pp. 425-440
    • Rota-Stabelli, O.1    Kayal, E.2    Gleeson, D.3    Daub, J.4    Boore, J.5
  • 24
    • 84860592190 scopus 로고    scopus 로고
    • Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications
    • Kilpert F, Held C, Podsiadlowski L, (2012) Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications. Mol Phylogenet Evol 64: 106-117.
    • (2012) Mol Phylogenet Evol , vol.64 , pp. 106-117
    • Kilpert, F.1    Held, C.2    Podsiadlowski, L.3
  • 25
    • 69549112948 scopus 로고    scopus 로고
    • What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)
    • Rasmussen D, Noor M, (2009) What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae). BMC Genomics 10: 382.
    • (2009) BMC Genomics , vol.10 , pp. 382
    • Rasmussen, D.1    Noor, M.2
  • 26
    • 79951947586 scopus 로고    scopus 로고
    • The mitochondrial genome of Colossendeis megalonyx supports a basal position of Colossendeidae within the Pycnogonida
    • Dietz L, Mayer C, Arango C, Leese F, (2010) The mitochondrial genome of Colossendeis megalonyx supports a basal position of Colossendeidae within the Pycnogonida. Mol Phyl Evol 58: 553-558.
    • (2010) Mol Phyl Evol , vol.58 , pp. 553-558
    • Dietz, L.1    Mayer, C.2    Arango, C.3    Leese, F.4
  • 27
    • 78649841402 scopus 로고    scopus 로고
    • Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics
    • Timmermans M, Dodsworth S, Culverwell C, Bocak L, Ahrens D, et al. (2010) Why barcode? High-throughput multiplex sequencing of mitochondrial genomes for molecular systematics. Nucl Acids Res 38: e197.
    • (2010) Nucl Acids Res , vol.38
    • Timmermans, M.1    Dodsworth, S.2    Culverwell, C.3    Bocak, L.4    Ahrens, D.5
  • 28
    • 77955362920 scopus 로고    scopus 로고
    • Identification and quantification of genomic repeats and sample contamination in assemblies of 454 pyrosequencing reads
    • Nederbragt A, Rounge T, Kausrud K, Jakobsen K, (2010) Identification and quantification of genomic repeats and sample contamination in assemblies of 454 pyrosequencing reads. Sequencing 2010: 782465.
    • (2010) Sequencing , vol.2010 , pp. 782465
    • Nederbragt, A.1    Rounge, T.2    Kausrud, K.3    Jakobsen, K.4
  • 29
    • 79952390994 scopus 로고    scopus 로고
    • Fast identification and removal of sequence contamination from genomic and metagenomic datasets
    • Schmieder R, Edwards R, (2011) Fast identification and removal of sequence contamination from genomic and metagenomic datasets. PLoS ONE 6: e17288.
    • (2011) PLoS ONE , vol.6
    • Schmieder, R.1    Edwards, R.2
  • 31
    • 79953716259 scopus 로고    scopus 로고
    • Resolving difficult phylogenetic questions: why more sequences are not enough
    • Philippe H, Brinkmann H, Lavrov D, Littlewood D, Manuel M, et al. (2011) Resolving difficult phylogenetic questions: why more sequences are not enough. PLoS Biology 9: e1000602.
    • (2011) PLoS Biology , vol.9
    • Philippe, H.1    Brinkmann, H.2    Lavrov, D.3    Littlewood, D.4    Manuel, M.5
  • 32
    • 84864598680 scopus 로고    scopus 로고
    • Origin of land plants revisited in the light of sequence contamination and missing data
    • Laurin-Lemay S, Brinkmann H, Philippe H, (2012) Origin of land plants revisited in the light of sequence contamination and missing data. Curr Biol 22: R593-R594.
    • (2012) Curr Biol , vol.22
    • Laurin-Lemay, S.1    Brinkmann, H.2    Philippe, H.3
  • 33
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul S, Madden T, Schaffer A, Zhang J, Zhang Z, et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucl Acids Res 25: 3389-3402.
    • (1997) Nucl Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.1    Madden, T.2    Schaffer, A.3    Zhang, J.4    Zhang, Z.5
  • 35
    • 0036226603 scopus 로고    scopus 로고
    • BLAT-the BLAST-like alignment tool
    • Kent W, (2002) BLAT-the BLAST-like alignment tool. Genome Res 12: 656-664.
    • (2002) Genome Res , vol.12 , pp. 656-664
    • Kent, W.1
  • 36
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25: 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 37
    • 77949587649 scopus 로고    scopus 로고
    • Fast and accurate long-read alignment with Burrows-Wheeler transform
    • Li H, Durbin R, (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
    • (2010) Bioinformatics , vol.26 , pp. 589-595
    • Li, H.1    Durbin, R.2
  • 38
    • 0034764307 scopus 로고    scopus 로고
    • SSAHA: a fast search method for large DNA databases
    • Ning Z, Cox A, Mullikin J, (2001) SSAHA: a fast search method for large DNA databases. Genome Res 11: 1725-1729.
    • (2001) Genome Res , vol.11 , pp. 1725-1729
    • Ning, Z.1    Cox, A.2    Mullikin, J.3
  • 39
    • 79955505877 scopus 로고    scopus 로고
    • Building a model: Developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing
    • Straub S, Fishbein M, Livshultz T, Foster Z, Parks M, et al. (2011) Building a model: Developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing. BMC Genomics 12: 211.
    • (2011) BMC Genomics , vol.12 , pp. 211
    • Straub, S.1    Fishbein, M.2    Livshultz, T.3    Foster, Z.4    Parks, M.5
  • 40
    • 55149092956 scopus 로고    scopus 로고
    • Isolation of microsatellites from unknown genomes using known genomes as enrichment templates
    • Leese F, Mayer C, Held C, (2008) Isolation of microsatellites from unknown genomes using known genomes as enrichment templates. Limnol Oceanogr 6: 412-426.
    • (2008) Limnol Oceanogr , vol.6 , pp. 412-426
    • Leese, F.1    Mayer, C.2    Held, C.3
  • 41
    • 85019361153 scopus 로고    scopus 로고
    • Website, acceessed 2012 March 3rd
    • Blanca J, Chevreux B (2011) sff_extract. Website:http://bioinf.comav.upv.es/sff_extract, acceessed 2012 March 3rd.
    • (2011) Sff_extract
    • Blanca, J.1    Chevreux, B.2
  • 46
    • 84860214016 scopus 로고    scopus 로고
    • The first genome size estimates for six species of krill (Malacostraca, Euphausiidae): large genomes at the north and south poles
    • Jeffery N, (2012) The first genome size estimates for six species of krill (Malacostraca, Euphausiidae): large genomes at the north and south poles. Polar Biol 35: 959-962.
    • (2012) Polar Biol , vol.35 , pp. 959-962
    • Jeffery, N.1
  • 48
    • 77951586434 scopus 로고    scopus 로고
    • Genome-wide analysis of tandem repeats in Daphnia pulex - a comparative approach
    • Mayer C, Leese F, Tollrian R, (2010) Genome-wide analysis of tandem repeats in Daphnia pulex- a comparative approach. BMC Genomics 11: 277.
    • (2010) BMC Genomics , vol.11 , pp. 277
    • Mayer, C.1    Leese, F.2    Tollrian, R.3
  • 49
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H, (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132: 365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 50
    • 0028118638 scopus 로고
    • SIMPLE34: an improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences
    • Hancock J, Armstrong J, (1994) SIMPLE34: an improved and enhanced implementation for VAX and Sun computers of the SIMPLE algorithm for analysis of clustered repetitive motifs in nucleotide sequences. Comput Appl Biosci 10: 67-70.
    • (1994) Comput Appl Biosci , vol.10 , pp. 67-70
    • Hancock, J.1    Armstrong, J.2
  • 51
    • 0036080338 scopus 로고    scopus 로고
    • Detecting cryptically simple protein sequences using the SIMPLE algorithm
    • Albà M, Laskowski R, Hancock J, (2002) Detecting cryptically simple protein sequences using the SIMPLE algorithm. Bioinformatics 18: 672-678.
    • (2002) Bioinformatics , vol.18 , pp. 672-678
    • Albà, M.1    Laskowski, R.2    Hancock, J.3
  • 52
    • 77949515434 scopus 로고    scopus 로고
    • QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects
    • Meglecz E, Costedoat C, Dubut V, Gilles A, Malausa T, et al. (2010) QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects. Bioinformatics 26: 403-404.
    • (2010) Bioinformatics , vol.26 , pp. 403-404
    • Meglecz, E.1    Costedoat, C.2    Dubut, V.3    Gilles, A.4    Malausa, T.5
  • 53
    • 23144460836 scopus 로고    scopus 로고
    • The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs
    • Schattner P, Brooks A, Lowe T, (2005) The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucl Acids Res 33: W686-W689.
    • (2005) Nucl Acids Res , vol.33
    • Schattner, P.1    Brooks, A.2    Lowe, T.3
  • 54
    • 38349180130 scopus 로고    scopus 로고
    • ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences
    • Laslett D, Canbäck B, (2008) ARWEN: a program to detect tRNA genes in metazoan mitochondrial nucleotide sequences. Bioinformatics 24: 172-175.
    • (2008) Bioinformatics , vol.24 , pp. 172-175
    • Laslett, D.1    Canbäck, B.2
  • 55
  • 60
    • 78650479127 scopus 로고    scopus 로고
    • Rapid microsatellite development for water striders by next-generation sequencing
    • Perry J, Rowe L, (2011) Rapid microsatellite development for water striders by next-generation sequencing. J Hered 102: 125-129.
    • (2011) J Hered , vol.102 , pp. 125-129
    • Perry, J.1    Rowe, L.2
  • 61
    • 77953140322 scopus 로고    scopus 로고
    • Mitochondrial genome evolution in Ophiuroidea, Echinoidea, and Holothuroidea: Insights in phylogenetic relationships of Echinodermata
    • Perseke M, Bernhard D, Fritzsch G, Brümmer F, Stadler P, et al. (2010) Mitochondrial genome evolution in Ophiuroidea, Echinoidea, and Holothuroidea: Insights in phylogenetic relationships of Echinodermata. Mol Phylogenet Evol 56: 201-211.
    • (2010) Mol Phylogenet Evol , vol.56 , pp. 201-211
    • Perseke, M.1    Bernhard, D.2    Fritzsch, G.3    Brümmer, F.4    Stadler, P.5
  • 62
    • 65449190100 scopus 로고    scopus 로고
    • Helicobacter pylori in health and disease
    • Cover T, Blaser M, (2009) Helicobacter pylori in health and disease. Gastroenterology 136: 1863-1873.
    • (2009) Gastroenterology , vol.136 , pp. 1863-1873
    • Cover, T.1    Blaser, M.2
  • 63
    • 0035876737 scopus 로고    scopus 로고
    • Detection of new hosts for white spot syndrome virus of shrimp using nested polymerase chain reaction
    • Hossain M, Chakraborty A, Joseph B, Otta S, Karunasagar I, et al. (2001) Detection of new hosts for white spot syndrome virus of shrimp using nested polymerase chain reaction. Aquaculture 198: 1-11.
    • (2001) Aquaculture , vol.198 , pp. 1-11
    • Hossain, M.1    Chakraborty, A.2    Joseph, B.3    Otta, S.4    Karunasagar, I.5
  • 64
    • 0034646377 scopus 로고    scopus 로고
    • Natural and experimental infection of white spot syndrome virus (WSSV) in benthic larvae of mud crab Scylla serrata
    • Chen L, Lo C, Chiu Y, Chang C, Kou G, (2000) Natural and experimental infection of white spot syndrome virus (WSSV) in benthic larvae of mud crab Scylla serrata. Dis Aquat Organ 40: 157-161.
    • (2000) Dis Aquat Organ , vol.40 , pp. 157-161
    • Chen, L.1    Lo, C.2    Chiu, Y.3    Chang, C.4    Kou, G.5
  • 65
    • 80051688000 scopus 로고    scopus 로고
    • Field guide to next-generation DNA sequencers
    • Glenn T, (2011) Field guide to next-generation DNA sequencers. Mol Ecol Resour 11: 759-769.
    • (2011) Mol Ecol Resour , vol.11 , pp. 759-769
    • Glenn, T.1
  • 66
    • 84856934143 scopus 로고    scopus 로고
    • Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake
    • Castoe T, Poole A, de Koning A, Jones K, Tomback D, et al. (2012) Rapid microsatellite identification from Illumina paired-end genomic sequencing in two birds and a snake. PLoS ONE 7: e30953.
    • (2012) PLoS ONE , vol.7
    • Castoe, T.1    Poole, A.2    de Koning, A.3    Jones, K.4    Tomback, D.5
  • 67
    • 77958600477 scopus 로고    scopus 로고
    • Cost-effective, species-specific microsatellite development for the endangered Dwarf Bulrush (Typha minima) using next-generation sequencing technology
    • Csencsics D, Brodbeck S, Holderegger R, (2010) Cost-effective, species-specific microsatellite development for the endangered Dwarf Bulrush (Typha minima) using next-generation sequencing technology. J Hered 101: 789-793.
    • (2010) J Hered , vol.101 , pp. 789-793
    • Csencsics, D.1    Brodbeck, S.2    Holderegger, R.3
  • 68
    • 79959254890 scopus 로고    scopus 로고
    • Comparison of random and SSR-enriched shotgun pyrosequencing for microsatellite discovery and single multiplex PCR optimization in Acacia harpophylla F. Muell. ex Benth
    • Lepais O, Bacles C, (2011) Comparison of random and SSR-enriched shotgun pyrosequencing for microsatellite discovery and single multiplex PCR optimization in Acacia harpophylla F. Muell. ex Benth. Mol Ecol Resour 11: 711-724.
    • (2011) Mol Ecol Resour , vol.11 , pp. 711-724
    • Lepais, O.1    Bacles, C.2
  • 69
    • 0036007439 scopus 로고    scopus 로고
    • Strategies for microsatellite isolation: a review
    • Zane L, Bargelloni L, Patarnello T, (2002) Strategies for microsatellite isolation: a review. Mol Ecol 11: 1-16.
    • (2002) Mol Ecol , vol.11 , pp. 1-16
    • Zane, L.1    Bargelloni, L.2    Patarnello, T.3
  • 70
    • 19944396462 scopus 로고    scopus 로고
    • Isolating microsatellite DNA loci
    • Glenn T, Schable N, (2005) Isolating microsatellite DNA loci. Methods Enzymol 395: 202-222.
    • (2005) Methods Enzymol , vol.395 , pp. 202-222
    • Glenn, T.1    Schable, N.2
  • 71
    • 0034714516 scopus 로고    scopus 로고
    • Analysis of mtDNA copy number and composition of single mitochondrial particles using flow cytometry and PCR
    • Cavelier L, Johannisson A, Gyllensten U, (2000) Analysis of mtDNA copy number and composition of single mitochondrial particles using flow cytometry and PCR. Exp Cell Res 259: 79-85.
    • (2000) Exp Cell Res , vol.259 , pp. 79-85
    • Cavelier, L.1    Johannisson, A.2    Gyllensten, U.3
  • 72
    • 78649653036 scopus 로고    scopus 로고
    • The complete mitochondrial genome of Radix balthica (Pulmonata, Basommatophora), obtained by low coverage shot gun next generation sequencing
    • Feldmeyer B, Hoffmeier K, Pfenninger M, (2010) The complete mitochondrial genome of Radix balthica (Pulmonata, Basommatophora), obtained by low coverage shot gun next generation sequencing. Mol Phylogenet Evol 57: 1329-1333.
    • (2010) Mol Phylogenet Evol , vol.57 , pp. 1329-1333
    • Feldmeyer, B.1    Hoffmeier, K.2    Pfenninger, M.3
  • 73
    • 84858710282 scopus 로고    scopus 로고
    • The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing
    • Groenenberg D, Pirovano W, Gittenberger E, Schilthuizen M, (2012) The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing. BMC Genomics 13: 114.
    • (2012) BMC Genomics , vol.13 , pp. 114
    • Groenenberg, D.1    Pirovano, W.2    Gittenberger, E.3    Schilthuizen, M.4
  • 74
    • 79951881661 scopus 로고    scopus 로고
    • Abundant human DNA contamination identified in non-primate genome databases
    • Longo M, O'Neill M, O'Neill R, (2011) Abundant human DNA contamination identified in non-primate genome databases. PLoS ONE 6: 16410.
    • (2011) PLoS ONE , vol.6 , pp. 16410
    • Longo, M.1    O'Neill, M.2    O'Neill, R.3
  • 75
    • 84555203214 scopus 로고    scopus 로고
    • Gene discovery in the threatened elkhorn coral: 454 sequencing of the Acropora palmata transcriptome
    • Polato N, Vera J, Baums I, (2011) Gene discovery in the threatened elkhorn coral: 454 sequencing of the Acropora palmata transcriptome. PLoS ONE 6: e28634.
    • (2011) PLoS ONE , vol.6
    • Polato, N.1    Vera, J.2    Baums, I.3
  • 76
    • 80051936630 scopus 로고    scopus 로고
    • Using the Acropora digitifera genome to understand coral responses to environmental change
    • Shinzato C, Shoguchi E, Kawashima T, Hamada M, Hisata K, et al. (2011) Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476: 320-323.
    • (2011) Nature , vol.476 , pp. 320-323
    • Shinzato, C.1    Shoguchi, E.2    Kawashima, T.3    Hamada, M.4    Hisata, K.5
  • 78
    • 79952097943 scopus 로고    scopus 로고
    • 454-pyrosequencing: a molecular battiscope for freshwater viral ecology
    • Rooks D, Smith D, McDonald J, Woodward M, McCarthy A, et al. (2010) 454-pyrosequencing: a molecular battiscope for freshwater viral ecology. Genes 1: 210-226.
    • (2010) Genes , vol.1 , pp. 210-226
    • Rooks, D.1    Smith, D.2    McDonald, J.3    Woodward, M.4    McCarthy, A.5
  • 79
    • 39149087390 scopus 로고    scopus 로고
    • Diversity and genomics of Antarctic marine micro-organisms
    • Murray A, Grzymski J, (2007) Diversity and genomics of Antarctic marine micro-organisms. Phil Trans R Soc B 362: 2259-2271.
    • (2007) Phil Trans R Soc B , vol.362 , pp. 2259-2271
    • Murray, A.1    Grzymski, J.2
  • 80
    • 78651467519 scopus 로고    scopus 로고
    • Temporal study of Helicobacter pylori presence in coastal freshwater, estuary and marine waters
    • Twing K, Kirchman D, Campbell B, (2011) Temporal study of Helicobacter pylori presence in coastal freshwater, estuary and marine waters. Water Res 45: 1897-1905.
    • (2011) Water Res , vol.45 , pp. 1897-1905
    • Twing, K.1    Kirchman, D.2    Campbell, B.3
  • 81
    • 84856446625 scopus 로고    scopus 로고
    • The discovery of new deep-sea hydrothermal vent communities in the Southern Ocean and implications for biogeography
    • Rogers A, Tyler P, Connelly D, Copley J, James R, et al. (2012) The discovery of new deep-sea hydrothermal vent communities in the Southern Ocean and implications for biogeography. PLoS Biol 10: e1001234.
    • (2012) PLoS Biol , vol.10
    • Rogers, A.1    Tyler, P.2    Connelly, D.3    Copley, J.4    James, R.5
  • 82
    • 34548768028 scopus 로고    scopus 로고
    • Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes
    • Hotopp J, Clark M, Oliveira D, Foster J, Fischer P, et al. (2007) Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes. Science 317: 1753-1756.
    • (2007) Science , vol.317 , pp. 1753-1756
    • Hotopp, J.1    Clark, M.2    Oliveira, D.3    Foster, J.4    Fischer, P.5


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