Cardiac simulation on multi-GPU platform

Journal of Supercomputing

Volumn 59, Issue 3, 2012, Pages 1360-1378

  Nimmagadda, Venkata Krishna ^a   Akoglu, Ali ^a   Hariri, Salim ^a   Moukabary, Talal ^b  

^a University of Arizona   (United States)

^b UNIVERSITY OF ARIZONA   (United States)

Author keywords

Bidomain model; Cardiac tissue; Graphics processing unit; Multi GPU

Indexed keywords

COMPUTER GRAPHICS; DATA TRANSFER; PARALLEL ARCHITECTURES; PARTIAL DIFFERENTIAL EQUATIONS; PROGRAM PROCESSORS; TISSUE; TISSUE ENGINEERING;

ACTION POTENTIAL DURATIONS; BIDOMAIN MODELS; CARDIAC TISSUES; GENERAL PURPOSE PROCESSORS; GRAPHIC PROCESSING UNITS (GPUS); GRAPHICS PROCESSING UNIT; MULTI-GPU; PARALLELIZATION STRATEGIES;

COMPUTER GRAPHICS EQUIPMENT;

EID: 84869777842     PISSN: 09208542     EISSN: 15730484     Source Type: Journal    
DOI: 10.1007/s11227-010-0540-x     Document Type: Article

References (17)

1. Ten Tusscher KH, Panfilov AV (2006) Alternans and spiral breakup in a human ventricular tissue model. Am J Physiol 90:326-345
2. Jack JJB, Noble D, Tsien RW (1975) Electric current flow in excitable cells. Clarendon, Oxford
3. NVIDIA Corporation (2007), CUDA Programming Guide 1.0. http://www.nvidia.com
4. Micikevicius P (2009) 3d Finite difference computation on GPUs using CUDA. In: GPGPU-2: Proceedings of 2nd workshop on general purpose processing on graphics processing units. ACM, New York, pp 79-84
5. Qu Z, Garfinkel A (1999) An advanced numerical algorithm for solving partial differential equation in cardiac conduction. IEEE Trans Biomed Eng 46(9):1166-1168
6. Roth BJ (1991) Action potential propagation in a thick strand of cardiac muscle. Circ Res 68:162-173
7. Smith GD (1985) Numerical solution of partial differential equations: Finite difference methods, 3rd edn. Clarendon, London
8. Ten Tusscher KHWJ, Noble D, Noble PJ, Panfilov AV (2004) A model for human ventricular tissue. Am J Physiol 286:H1573-H1589
9. Luo CH, Rudy Y (1991) A model of the ventricular cardiac action potential: Depolarization, repolarization, and their interaction. Circ Res 68:1501-1526
10. Beeler GW, Reuter H (1977) Reconstruction of the action potential of ventricular myocardial fibres. J Physiol 268:177-210
11. Noble D (1962) A modification of the Hodgkin-Huxley equations applicable to Purkinje fibre action and pace-maker potentials. J Physiol 160:317-352
12. McAllister RE, Noble D, Tsien RW(1975) Reconstruction of the electrical activity of cardiac Purkinje fibres. J Physiol 251:1-59
13. Yanagihara K, Noma A, Irisawa H (1980) Reconstruction of sino-atrial node pacemaker potential based on the voltage clamp experiments. Jpn J Physiol 30:841-857
14. Cardiac modeling, http://www.cardiacmodeling.org/
15. Vigmond EJ, Boyle PM, Joshua Leon L, Plank Gernot (2009) Near-real-time simulations of biolelectric activity in small mammalian hearts using graphical processing units. In: Engineering in medicine and biology society, pp 3290-3293
16. Sato D, Xie Y, Weiss JN, Qu Z, Garfinkel A, Sanderson AR (2009) Acceleration of cardiac tissue simulation with graphic processing units. In: Medical and biological engineering and computing, pp 1011-1015
17. Unat D, Cai X, Baden S (2010) Optimizing the Aliev-Panfilov model of cardiac excitation on heterogeneous systems. University of Iceland, Reykjavik