DNA Barcode Sequencing from Old Type Specimens as a Tool in Taxonomy: A Case Study in the Diverse Genus Eois (Lepidoptera: Geometridae)

PLoS ONE

Volumn 7, Issue 11, 2012, Pages

  Strutzenberger, Patrick ^a   Brehm, Gunnar ^b   Fiedler, Konrad ^a  

^a UNIVERSITY OF VIENNA   (Austria)

^b FRIEDRICH SCHILLER UNIVERSITY JENA   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ARTICLE; BIODIVERSITY; CONTROLLED STUDY; CORRELATION ANALYSIS; DNA DETERMINATION; DNA EXTRACTION; DNA SEQUENCE; EOIS; GENETIC CONSERVATION; LEPIDOPTERA; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; TAXONOMY;

ANIMALS; BIODIVERSITY; BIOLOGICAL EVOLUTION; DNA BARCODING, TAXONOMIC; DNA PRIMERS; GENETIC VARIATION; MOTHS; PHYLOGENY; PLANTS; REPRODUCIBILITY OF RESULTS; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TIME FACTORS;

GEOMETRIDAE; LEPIDOPTERA;

EID: 84869749108     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0049710     Document Type: Article

References (37)

1. Brehm G, Pitkin LM, Hilt N, Fiedler K, (2005) Montane Andean rain forests are a global diversity hotspot of geometrid moths. J Biogeogr 32: 1621-1627.
2. Hilt N, Brehm G, Fiedler K, (2006) Diversity and ensemble composition of geometrid moths along a successional gradient in the Ecuadorian Andes. J Trop Ecol 22: 155-166.
3. Strutzenberger P, Brehm G, Fiedler K, (2011) DNA barcoding-based species delimitation increases species count of Eois (Geometridae) moths in a well-studied tropical mountain forest by up to 50%. Insect Sci 18: 349-362.
4. Bodner F, Brehm G, Homeier J, Strutzenberger P, Fiedler K, (2010) Caterpillars and host plant records for 59 species of Geometridae (Lepidoptera) from a montane rainforest in southern Ecuador. J Insect Sci 10: 67.
5. Connahs H, Rodriguez-Castaneda G, Walters T, Walla T, Dyer L, (2009) Geographic variation in host-specificity and parasitoid pressure of an herbivore (Geometridae) associated with the tropical genus Piper (Piperaceae). J Insect Sci 9: 28.
6. Strutzenberger P, Brehm G, Bodner F, Fiedler K, (2010) Molecular phylogeny of Eois (Lepidoptera, Geometridae): evolution of wing patterns and host plant use in a species-rich group of Neotropical moths. Zool Scr 39: 603-620.
7. Strutzenberger P, Fiedler K, (2011) Temporal patterns of diversification in Andean Eois, a species-rich clade of moths (Lepidoptera, Geometridae). J Evol Biol 24: 919-925.
8. Brehm G, Bodner F, Strutzenberger P, Hünefeld F, Fiedler K, (2011) Neotropical Eois (Lepidoptera: Geometridae): Checklist, Biogeography, Diversity, and Description Patterns. Ann Entomol Soc Am 104: 1091-1107.
9. Dyer LA, Gentry GL, Greeney H, Walla T (2012) Caterpillars and parasitoids of an Ecuadorian cloud forest. Available: http://www.caterpillars.org.
10. Janzen DH, Hallwachs W (2012) Dynamic database for an inventory of the macrocaterpillar fauna, and its food plants and parasitoids, of Area de Conservacion Guanacaste (ACG), northwestern Costa Rica. Available: http://janzen. sas.upenn.edu.
11. Stireman JO, Greeney HF, Dyer LA, (2009) Species richness and host associations of Lepidoptera-attacking Tachinidae in the northeast Ecuadorian Andes. J Insect Sci 9: 39.
12. Hebert PDN, Cywinska A, Ball SL, deWaard JR, (2003) Biological identifications through DNA barcodes. P Roy Soc B-Biol Sci 270: 313-321.
13. Nagy ZT, Sonet G, Glaw F, Vences M, (2012) First Large-Scale DNA Barcoding Assessment of Reptiles in the Biodiversity Hotspot of Madagascar, Based on Newly Designed COI Primers. PLoS ONE 7(3): e34506 doi:10.1371/journal.pone.0034506.
14. Janzen DH, Hallwachs W, Blandin P, Burns JM, Cadiou J, et al. (2009) Integration of DNA barcoding into an ongoing inventory of complex tropical biodiversity. Mol Ecol Res 9: 1-26.
15. Schlick-Steiner BC, Steiner FM, Seifert B, Stauffer C, Christian E, et al. (2010) Integrative Taxonomy: A Multisource Approach to Exploring Biodiversity. Ann Rev Entomol 55: 421-438.
16. Yeates DK, Seago A, Nelson L, Cameron SL, Joseph L, et al. (2011) Integrative taxonomy, or iterative taxonomy?. Syst Entomol 36: 209-217.
17. Zimmermann J, Hajibabaei M, Blackburn DC, Hanken J, Cantin E, et al. (2008) DNA damage in preserved specimens and tissue samples: a molecular assessment. Front Zool 5: 18.
18. Overballe-Petersen S, Orlando L, Willerslev E, (2012) Next-generation sequencing offers new insights into DNA degradation. Trends Biotechnol 30: 364-368.
19. Miller W, Drautz DI, Janecka JE, Lesk AM, Ratan A, et al. (2009) The mitochondrial genome sequence of the Tasmanian tiger (Thylacinus cynocephalus). Genome Res 19: 213-220.
20. Knölke S, Erlacher S, Hausmann A, Miller MA, Segerer A, (2005) A procedure for combined genitalia dissection and DNA extraction in Lepidoptera. Insect Syst Evol 35: 401-409.
21. Espeland M, Irestedt M, Kjell AJ, Akerlund M, Bergh J, et al. (2010) Dichlorvos exposure impedes extraction and amplification of DNA from insects in museum collections. Front Zool 7: 2.
22. Wandeler P, Hoeck PE, Keller LF, (2007) Back to the future: museum specimens in population genetics. Trends Evol Ecol 22: 634-642.
23. Gilbert MTP, Moore W, Melchior L, Worobey M, (2007) DNA Extraction from Dry Museum Beetles without Conferring External Morphological Damage. PLoS ONE 2(3): e272 doi:10.1371/journal.pone.0000272.
24. Thomsen PF, Elias S, Gilbert MTP, Haile J, Munch K, et al. (2009) Non-Destructive Sampling of Ancient Insect DNA. PLoS ONE 4(4): e5048 doi:10.1371/journal.pone.0005048.
25. Shokralla S, Zhou X, Janzen DH, Hallwachs W, Landry J-F, et al. (2011) Pyrosequencing for Mini-Barcoding of Fresh and Old Museum Specimens. PLoS ONE 6(7): e21252 doi:10.1371/journal.pone.0021252.
26. Hausmann A, Herbert PDN, Mitchell A, Rougerie R, Sommerer M, et al. (2009) Revision of the Australian Oenochroma vinaria Guenée, 1858 species-complex (Lepidoptera: Geometridae, Oenochrominae): DNA barcoding reveals cryptic diversity and assesses status of type specimen without dissection. Zootaxa 2239: 1-21.
27. Lees DC, Rougerie R, Zeller-Lukashort C, Kristensen NP, (2010) DNA mini-barcodes in taxonomic assignment: a morphologically unique new homoneurous moth clade from the Indian Himalayas described in Micropterix (Lepidoptera, Micropterigidae). Zool Scr 39: 642-661.
28. Prince AM, Andrus L, (1992) PCR: How to kill unwanted DNA. BioTechniques 12: 358-360.
29. Lees DC, Lack HW, Rougerie R, Hernandez-Lopez A, Raus T, et al. (2011) Tracking origins of invasive herbivores using herbaria and archival DNA: the case of the horse-chestnut leafminer. Front Ecol Environ 9: 322-328.
30. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
31. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4 Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
32. Orlando L, Leonard JA, Thenot A, Laudet V, Guerin C, et al. (2003) Ancient DNA analysis reveals woolly rhino evolutionary relationships, Mol Phylogenet Evol. 28: 485-499.
33. Kolokotronis S, MacPhee RDE, Greenwood AD, (2007) Detection of mitochondrial insertions in the nucleus (NuMts) of Pleistocene and modern muskoxen. BMC Evol Biol 7: 67.
34. Hajibabaei M, Janzen DH, Burns JM, Hallwachs W, Hebert PDN, (2006) DNA barcodes distinguish species of tropical Lepidoptera. PNAS 103: 968-971.
35. Hausmann A, Haszprunar G, Hebert PDN, (2011) DNA Barcoding the Geometrid Fauna of Bavaria (Lepidoptera): Successes, Surprises, and Questions. PLoS ONE 6(2): e17134 doi:10.1371/journal.pone.0017134.
36. Hajibabaei M, Smith AM, Janzen DH, Rodriguez JJ, Whitfield JB, et al. (2006) A minimalist barcode can identify a specimen whose DNA is degraded. Mol Ecol Notes 6: 959-971.
37. Arandjelovic M, Guschanski K, Schubert G, Harris TR, Thalmann O, et al. (2009) Two-step multiplex polymerase chain reaction improves the speed and accuracy of genotyping using DNA from noninvasive and museum samples. Mol Ecol Res, 9, 28-36.