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Volumn 103 LNICST, Issue , 2012, Pages 236-241

Spatio-temporal modeling and simulation of Mycobacterium pathogenesis using petri nets

Author keywords

biological system; Formal methods; Petri nets; simulation

Indexed keywords

BIOINFORMATICS; BIOMIMETICS; DATA VISUALIZATION; FORMAL METHODS; IMAGE ANALYSIS; PETRI NETS; THREE DIMENSIONAL COMPUTER GRAPHICS;

EID: 84869594031     PISSN: 18678211     EISSN: None     Source Type: Book Series    
DOI: 10.1007/978-3-642-32711-7_23     Document Type: Conference Paper
Times cited : (1)

References (22)
  • 2
    • 45749089368 scopus 로고    scopus 로고
    • The calculus of looping sequences
    • Bernardo, M., Degano, P., Zavattaro, G. (eds.). Springer, Heidelberg
    • Barbuti, R., Caravagna, G., Maggiolo-Schettini, A., Milazzo, P., Pardini, G.: The Calculus of Looping Sequences. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, vol. 5016, pp. 387-423. Springer, Heidelberg (2008)
    • (2008) SFM 2008. LNCS , vol.5016 , pp. 387-423
    • Barbuti, R.1    Caravagna, G.2    Maggiolo-Schettini, A.3    Milazzo, P.4    Pardini, G.5
  • 3
    • 0035179747 scopus 로고    scopus 로고
    • Dynamic nature of host-pathogen interactions in Mycobacterium marinum granulomas
    • Bouley, D.M., et al.: Dynamic nature of host-pathogen interactions in Mycobacterium marinum granulomas. Infection and Immunity 69(12), 7820 (2001)
    • (2001) Infection and Immunity , vol.69 , Issue.12 , pp. 7820
    • Bouley, D.M.1
  • 4
    • 33747877324 scopus 로고    scopus 로고
    • BIOCHAM: An environment for modeling biological systems and formalizing experimental knowledge
    • DOI 10.1093/bioinformatics/btl172
    • Calzone, L., et al.: BIOCHAM: an environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics 22(14), 1805-1807 (2006) (Pubitemid 44288351)
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. 1805-1807
    • Calzone, L.1    Fages, F.2    Soliman, S.3
  • 5
    • 26444592298 scopus 로고    scopus 로고
    • Brane calculi interactions of biological membranes
    • Compuatational Methods in Systems Biology: International Conference CMSB 2004, Revised Selected Papers
    • Cardelli, L.: Brane Calculi - Interactions of Biological Membranes. In: Danos, V., Schachter, V. (eds.) CMSB 2004. LNCS (LNBI), vol. 3082, pp. 257-278. Springer, Heidelberg (2005) (Pubitemid 41420546)
    • (2005) Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science) , vol.3082 , pp. 257-278
    • Cardelli, L.1
  • 6
    • 34548302044 scopus 로고    scopus 로고
    • Petri net modelling of biological networks
    • DOI 10.1093/bib/bbm029, Integrative Biology
    • Chaouiya, C.: Petri net modelling of biological networks. Briefings in Bioinformatics 8(4), 210-219 (2007) (Pubitemid 47336806)
    • (2007) Briefings in Bioinformatics , vol.8 , Issue.4 , pp. 210-219
    • Chaouiya, C.1
  • 7
    • 34447280821 scopus 로고    scopus 로고
    • Formal Molecular Biology Done in CCS-R
    • DOI 10.1016/j.entcs.2004.01.040, PII S1571066107004963, Proceedings of the First Workshop on Concurrent Models in Molecular Biology (BioConcur 2003)
    • Danos, V., Krivine, J.: Formal Molecular Biology Done in CCS-R. Electronic Notes in Theoretical Computer Science 180(3), 31-49 (2007) (Pubitemid 47042645)
    • (2007) Electronic Notes in Theoretical Computer Science , vol.180 , Issue.3 , pp. 31-49
    • Danos, V.1    Krivine, J.2
  • 8
    • 36049044199 scopus 로고    scopus 로고
    • Executable cell biology
    • DOI 10.1038/nbt1356, PII NBT1356
    • Fisher, J., Henzinger, T.A.: Executable cell biology. Nature Biotechnology 25(11), 1239-1249 (2007) (Pubitemid 350089829)
    • (2007) Nature Biotechnology , vol.25 , Issue.11 , pp. 1239-1249
    • Fisher, J.1    Henzinger, T.A.2
  • 9
    • 21644439156 scopus 로고    scopus 로고
    • Modeling and simulation of molecular biology systems using Petri nets: Modeling goals of various approaches
    • Hardy, S., Robillard, P.N.: Modeling and simulation of molecular biology systems using Petri nets: modeling goals of various approaches. Journal of Bioinformatics and Computational Biology 2(4), 595-613 (2004)
    • (2004) Journal of Bioinformatics and Computational Biology , vol.2 , Issue.4 , pp. 595-613
    • Hardy, S.1    Robillard, P.N.2
  • 10
    • 69949162559 scopus 로고    scopus 로고
    • Snoopy-A tool to design and execute graph-based formalisms
    • Heiner, M., et al.: Snoopy-A Tool to Design and Execute Graph-Based Formalisms. Petri Net Newsletter 74, 8-22 (2008)
    • (2008) Petri Net Newsletter , vol.74 , pp. 8-22
    • Heiner, M.1
  • 11
    • 0000491652 scopus 로고
    • A Petri net application to model metabolic processes
    • Hofestädt, R.: A Petri net application to model metabolic processes. Systems Analysis Modelling Simulation 16(2), 113-122 (1994)
    • (1994) Systems Analysis Modelling Simulation , vol.16 , Issue.2 , pp. 113-122
    • Hofestädt, R.1
  • 12
    • 45849103095 scopus 로고    scopus 로고
    • Insights into early mycobacterial pathogenesis from the zebrafish
    • Lesley, R., Ramakrishnan, L.: Insights into early mycobacterial pathogenesis from the zebrafish. Current Opinion in Microbiology 11(3), 277-283 (2008)
    • (2008) Current Opinion in Microbiology , vol.11 , Issue.3 , pp. 277-283
    • Lesley, R.1    Ramakrishnan, L.2
  • 13
    • 84890307870 scopus 로고    scopus 로고
    • Computation of enabled transition instances for colored petri nets
    • Liu, F., et al.: Computation of Enabled Transition Instances for Colored Petri Nets. In: Proc. AWPN, pp. 51-65 (2010)
    • (2010) Proc. AWPN , pp. 51-65
    • Liu, F.1
  • 14
    • 79960290056 scopus 로고    scopus 로고
    • A multifaceted approach to modeling the immune response in tuberculosis
    • Marino, S., et al.: A multifaceted approach to modeling the immune response in tuberculosis. Wiley Interdisciplinary Reviews. Systems Biology and Medicine 3(4), 479-489 (2011)
    • (2011) Wiley Interdisciplinary Reviews. Systems Biology and Medicine , vol.3 , Issue.4 , pp. 479-489
    • Marino, S.1
  • 15
    • 52149106883 scopus 로고    scopus 로고
    • Stochastic Petri Net extension of a yeast cell cycle model
    • Mura, I., Csikász-Nagy, A.: Stochastic Petri Net extension of a yeast cell cycle model. Journal of Theoretical Biology 254(4), 850-860 (2008)
    • (2008) Journal of Theoretical Biology , vol.254 , Issue.4 , pp. 850-860
    • Mura, I.1    Csikász-Nagy, A.2
  • 17
    • 0037174201 scopus 로고    scopus 로고
    • A guide to membrane computing
    • DOI 10.1016/S0304-3975(02)00136-6, PII S0304397502001366, Natural Computing
    • Pun, G.: A guide to membrane computing. Theoretical Computer Science 287(1), 73-100 (2002) (Pubitemid 35019161)
    • (2002) Theoretical Computer Science , vol.287 , Issue.1 , pp. 73-100
    • Pun, G.1    Rozenberg, G.2
  • 20
    • 6344281115 scopus 로고    scopus 로고
    • Identifying control mechanisms of granuloma formation during M. tuberculosis infection using an agent-based model
    • DOI 10.1016/j.jtbi.2004.06.031, PII S0022519304003212
    • Segovia-Juarez, J.L., et al.: Identifying control mechanisms of granuloma formation during M. tuberculosis infection using an agent-based model. Journal of Theoretical Biology 231(3), 357-376 (2004) (Pubitemid 39402949)
    • (2004) Journal of Theoretical Biology , vol.231 , Issue.3 , pp. 357-376
    • Segovia-Juarez, J.L.1    Ganguli, S.2    Kirschner, D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.