A Comprehensive Analysis of Interaction and Localization of Arabidopsis SKP1-LIKE (ASK) and F-Box (FBX) Proteins

PLoS ONE

Volumn 7, Issue 11, 2012, Pages

  Kuroda, Hirofumi ^a   Yanagawa, Yuki ^a   Takahashi, Naoki ^a,b   Horii, Yoko ^a   Matsui, Minami ^a  

^a RIKEN YOKOHAMA INSTITUTE   (Japan)

^b NARA INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARABIDOPSIS PROTEIN; ARABIDOPSIS SKP1 LIKE PROTEIN; F BOX PROTEIN; LEUCINE; PROTEIN VARIANT; UNCLASSIFIED DRUG;

ARABIDOPSIS; ARTICLE; ASK GENE; ASSAY; CELLULAR DISTRIBUTION; CONTROLLED STUDY; FBX GENE; GENE EXPRESSION; IN VIVO STUDY; MALE GAMETOPHYTE; NONHUMAN; PLANT GENE; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DOMAIN; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; SEED DEVELOPMENT;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; F-BOX PROTEINS; GENE EXPRESSION PROFILING; MICROARRAY ANALYSIS; MULTIPROTEIN COMPLEXES; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; PROTEIN STRUCTURE, TERTIARY; TWO-HYBRID SYSTEM TECHNIQUES; UBIQUITIN;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA;

EID: 84869235410     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0050009     Document Type: Article

References (30)

1. Hua Z, Vierstra RD, (2011) The cullin-RING ubiquitin-protein ligases. Ann Rev Plant Biol 62: 299-334.
2. Lyzenga WJ, Stone SL, (2012) Abiotic stress tolerance mediated by protein ubiquitination. J Exp Bot 63: 599-616.
3. Igawa T, Fujiwara M, Takahashi H, Sawasaki T, Endo Y, et al. (2009) Isolation and identification of ubiquitin-related proteins from Arabidopsis seedlings. J Exp Bot 60: 3067-3073.
4. Manzano C, Abraham Z, López-Torrejón G, del Pozo JC, (2008) Identification of ubiquitinated proteins in Arabidopsis. Plant Mol Biol 68: 145-158.
5. Maor R, Jones A, Nühse TS, Studholme DJ, Peck SC, et al. (2007) Multidimensional protein identification technology (MudPIT) analysis of ubiquitinated proteins in plants. Mol Cell Proteomics 6: 601-610.
6. Saracco SA, Hansson M, Scalf M, Walker JM, Smith LM, et al. (2009) Tandem affinity purification and mass spectrometric analysis of ubiquitinated proteins in Arabidopsis. Plant J 59: 344-358.
7. Mazzucotelli E, Belloni S, Marone D, Leonardis AM, Guerra D, et al. (2006) The E3 ubiquitin ligase gene family in plants: regulation by degradation. Current Genomics 7: 509-522.
8. Gagne JM, Downes BP, Shiu SH, Durski AM, Vierstra RD, (2002) The F-box subunit of the SCF complex is encoded by a diverse superfamily of genes in Arabidopsis. Proc Natl Acad Sci USA 99: 11519-24.
9. Skaar JR, Pagan JK, Pagano M, (2009) SnapShot: F box proteins I. Cell. 137: 1160-1160.
10. Hua Z, Zou C, Shiu SH, Vierstra RD, (2011) Phylogenetic comparison of F-box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. PLoS One 6: e16219.
11. Li WH (1983) Evolution of duplicate genes and pseudogenes. In: Nei M, Koehm RK, editors. Evolution of genes and proteins. Sunderland, MA; Sinauer Associates Inc. 14-37.
12. Thomas JH, (2006) Adaptive evolution in two large families of ubiquitin-ligase adapters in nematodes and plants. Genome Res 16: 1017-1030.
13. Gray WM, del Pozo JC, Walker L, Hobbie L, Risseeuw E, et al. (1999) Identification of an SCF ubiquitin-ligase complex required for auxin response in Arabidopsis thaliana. Genes Dev 13: 1678-1691.
14. Devoto A, Nieto-Rostro M, Xie D, Ellis C, Harmston R, et al. (2002) Plant J. 32: 457-466.
15. Takahashi N, Kuroda H, Kuromori T, Hirayama T, Seki M, et al. (2004) Expression and interaction analysis of Arabidopsis Skp1-related genes. Plant Cell Physiol 45: 83-91.
16. Kuroda H, Takahashi N, Shimada H, Seki M, Shinozaki K, et al. (2002) Classification and expression analysis of Arabidopsis FBX-containing protein genes. Plant Cell Physiol 43: 1073-85.
17. Yang M, Hu Y, Lodhi M, McCombie WR, Ma H, (1999) The Arabidopsis SKP1-LIKE gene is essential for male meiosis and may control homologue separation. Proc Natl Acad Sci USA 96: 11416-11421.
18. Yang X, Timofejeva L, Ma H, Makaroff CS, (2006) The Arabidopsis SKP1 homolog ASK1 controls meiotic chromosome remodeling and release of chromatin from the nuclear membrane and nucleolus. J Cell Sci 119: 3754-3763.
19. Wang X, Ni W, Ge X, Zhang J, Ma H, et al. (2006) Proteomic identification of potential target proteins regulated by an ASK1-mediated proteolysis pathway. Cell Res 16: 489-498.
20. Zhao D, Han T, Risseeuw E, Crosby WL, Ma H, (2003) Conservation and divergence of ASK1 and ASK2 gene functions during male meiosis in Arabidopsis thaliana. Plant Mol Biol 53: 163-173.
21. Liu F, Ni W, Griffith ME, Huang Z, Chang C, et al. (2004) The ASK1 and ASK2 genes are essential for Arabidopsis early development. Plant Cell 16: 5-20.
22. Marrocco K, Lecureuil A, Nicolas P, Guerche P, (2003) The Arabidopsis SKP-like genes present a spectrum of expression profiles. Plant Mol Biol 52: 715-727.
23. Schulman BA, Carrano AC, Jeffrey PD, Bowen Z, Kinnucan ERE, et al. (2000) Insights into SCF ubiquitin ligases from the structure of the Skp1-Skp2 complex. Nature 408: 381-386.
24. Li X, Zhang D, Hannink M, Beamer LJ, (2004) Crystal structure of the Kelch domain of human Keap1. J Biol Chem 279: 54750-54758.
25. Lin HK, Wang G, Chen Z, Teruya-Feldstein J, Liu Y, et al. (2009) Phosphorylation-dependent regulation of cytosolic localization and oncogenic function of Skp2 by Akt/PKB. Nat Cell Biol 11: 420-432.
26. Callis J, Bedinger P, (1994) Developmentally regulated loss of ubiquitin and ubiquitinated proteins during pollen maturation in maize. Proc Natl Acad Sci USA 91: 6074-6077.
27. Igawa T, Fujiwara M, Tanaka I, Fukao Y, Yanagawa Y, (2010) Characterization of bacterial-type phosphoenolpyruvate carboxylase expressed in male gametophyte of higher plants. BMC Plant Biol 10: 200.
28. Doelling JH, Phillips AR, Soyler-Ogretim G, Wise J, Chandler J, et al. (2007) The ubiquitin-specific protease subfamily UBP3/UBP4 is essential for pollen development and transmission in Arabidopsis. Plant Physiol 145: 801-813.
29. Waadt R, Schmidt LK, Lohse M, Hashimoto K, Bock R, et al. (2008) Multicolor bimolecular fluorescence complementation reveals simultaneous formation of alternative CBL/CIPK complexes in planta. Plant J 56: 505-516.
30. Kondou Y, Nakazawa M, Kawashima M, Ichikawa T, Yoshizumi T, et al. (2008) RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth. Plant Physiol 147: 1924-1935.