Microbial community composition controls the effects of climate change on methane emission from rice paddies

Environmental Microbiology Reports

Volumn 4, Issue 6, 2012, Pages 648-654

  Liu, Guang Cheng ^a   Tokida, Takesi ^b   Matsunami, Toshinori ^c   Nakamura, Hirofumi ^d   Okada, Masumi ^e   Sameshima, Ryoji ^d   Hasegawa, Toshihiro ^b   Sugiyama, Shu Ichi ^a  

^a HIROSAKI UNIVERSITY   (Japan)

^b NATIONAL INSTITUTE FOR AGRO ENVIRONMENTAL SCIENCES   (Japan)

^c Forestry and Fisheries Research Center   (Japan)

^d NATIONAL AGRICULTURAL RESEARCH CENTER FOR TOHOKU REGION   (Japan)

^e IWATE UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ARCHAEA;

EID: 84869217604     PISSN: None     EISSN: 17582229     Source Type: Journal    
DOI: 10.1111/j.1758-2229.2012.00391.x     Document Type: Article

References (31)

1. Allen, L.H., Albrecht, S., Colon-Guasp, W., Covell, W.S.A., Baker, J.T., Pan, D., and Cboote, K.J. (2003) Methane emission of rice increased by elevated carbon dioxide and temperature. J Environ Qual 32: 1978-1991.
2. Angel, R., Matthies, D., and Conrad, R. (2011) Activation of methanogenesis in arid biological soil crusts despite the presence of oxygen. PLoS ONE 6: e20453.
3. 2O, and NO). Microbiol Rev 60: 609-640.
4. Conrad, R. (2007) Soil microbial communities and global climate change-methanotrophic and methanogenic communities as paradigms. In Modern Soil Microbiology, 2nd edn. van Elsas, J.D., Jansson, J.K., and Trevors, J.T. (eds). Boca Raton, FL, USA: CRC Press, pp. 263-282.
5. Conrad, R., and Klose, M. (1999) Anaerobic conversion of carbon dioxide to methane, acetate and propionate on washed rice roots. FEMS Microbiol Ecol 30: 147-155.
6. Conrad, R., Klose, M., Noll, M., Kemnitz, D., and Bodelier, P.L.E. (2008) Soil type links microbial colonization of rice roots to methane emission. Glob Chang Biol 14: 657-669.
7. Erkel, C., Kube, M., Reinhardt, R., and Liesack, W. (2006) Genome of rice cluster I Archaea - the key methane producers in the rice rhizosphere. Science 313: 370-372.
8. Frank, D.C., Esper, J., Raible, C.C., Buntgen, U., Trouet, V., Stocker, B., and Joos, F. (2010) Ensemble reconstruction constraints on the global carbon cycle sensitivity to climate. Nature 463: 527-530.
9. Glissmann, K., and Conrad, R. (2000) Fermentation pattern of methanogenic degradation of rice straw in anoxic paddy soil. FEMS Microbiol Ecol 31: 117-126.
10. Grosskopf, R., Stubner, S., and Liesack, W. (1998) Novel euryarchaeotal lineages detected on rice roots and in the anoxic bulk soil of flooded rice microcosms. Appl Environ Microbiol 64: 4983-4989.
11. Hales, B.A., Edwards, C., Rirchie, D.A., Hall, G., Pickup, R.W., and Saunders, J.R. (1996) Isolation and identification of methanogen-specific DNA from blanket bog peat by PCR amplification and sequence analysis. Appl Environ Microbiol 62: 668-675.
12. 2 enrichment (FACE) on methanogenic archaeal communities inhabiting rice roots in a Japanese rice field. Soil Sci Plant Nutr 51: 91-100.
13. Heimann, M., and Reichstein, M. (2008) Terrestrial ecosystem carbon dynamics and climate feedbacks. Nature 451: 289-292.
14. 4 emission from a rice paddy field. Glob Chang Biol 9: 1458-1464.
15. IPCC (2007) Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of Theintergovernmental Panel on Climate Change. Cambridge, UK: Cambridge University Press.
16. 4). Soil Biol Biochem 36: 1399-1416.
17. Krüger, M., Frenzel, P., Dana Kemnitz, D., and Conrad, R. (2005) Activity, structure and dynamics of the methanogenic archaeal community in a flooded Italian rice field. FEMS Microbiol Ecol 51: 323-331.
18. 2 enrichment and rice cultivars in a Japanese paddy soil. Glob Chang Biol 14: 2678-2687.
19. Lu, Y., and Conrad, R. (2005) In situ stable isotope probing of methanogenic archaea in the rice rhizosphere. Science 309: 1088-1090.
20. Lueders, T., Chin, K., Conrad, R., and Friedrich, M. (2001) Molecular analyses of methyl-coenzyme M reductase α-subunit (mcrA) genes in rice field soil and enrichment cultures reveal the methanogenic phenotype of a novel archaeal lineage. Environ Microbiol 3: 194-204.
21. Ma, K.E., Qiu, Q., and Lu, Y. (2010) Microbial mechanism for rice variety control on methane emission from rice field soil. Glob Chang Biol 16: 3085-3095.
22. 2 greenhouse gases and climate change. Nature 476: 43-50.
23. Petit, J., Jr, Jouzel, J., and Raynaud, D. (1999) Climate and atmospheric history of the past 420, 000 years from the Vostok ice core, Antarctica. Nature 399: 429-436.
24. Sakai, S., Imachi, H., Hanada, S., Ohashi, A., Harada, H., and Kamagata, Y. (2008) Methanocella paludicola gen. nov., sp. nov., a methane-producing archaeon, the first isolate of the lineage 'Rice Cluster I', and proposal of the new archaeal order Methanocellales ord. nov. Int J Syst Evol Microbiol 58: 929-936.
25. Schimel, J.P., and Gulledge, J.A.Y. (1998) Microbial community structure and global trace gases. Glob Chang Biol 4: 745-758.
26. Sokal, R.R., and Rohlf, F.J. (1981) Biometry, 2nd edn. New York, USA: Freeman.
27. 4 emission from a rice paddy field: impact assessment and stoichiometric evaluation. Biogeosciences 7: 2639-2653.
28. 2 concentration and soil temperature. Glob Chang Biol 17: 3327-3337.
29. 2. Nature 475: 214-216.
30. Watanabe, T., Asakawa, S., Nakamura, A., Nagaoka, K., and Kimura, M. (2004) DGGE method for analyzing 16S rDNA of methanogenic archaeal community in paddy field soil. FEMS Microbiol Ecol 232: 153-163.
31. Ziska, L.H., Moya, T.B., and Wassmann, R. (1998) Long-term growth at elevated carbon dioxide stimulates methane emission in tropical paddy rice. Glob Chang Biol 4: 657-665.