Spectral optical properties of selected photosynthetic microalgae producing biofuels

Journal of Quantitative Spectroscopy and Radiative Transfer

Volumn 114, Issue , 2013, Pages 122-135

  Lee, Euntaek ^a   Heng, Ri Liang ^a   Pilon, Laurent ^a  

^a University of California   (United States)

Author keywords

Biofuel; Hydrogen; Optical constants; Photobioreactors; Photosynthesis; Phytoplanktons; Scattering; T matrix method

Indexed keywords

ABSORPTION INDEXES; ABSORPTION PEAKS; AXISYMMETRIC; BIOFUEL PRODUCTION; BOTRYOCOCCUS BRAUNII; CARBON CYCLES; CARBON DIOXIDE MITIGATION; CHLAMYDOMONAS REINHARDTII; CHLORELLA SP; CHLOROPHYLL ANTENNA; COMPLEX INDEX OF REFRACTION; CONTINUOUS FUNCTIONS; DIAMETER DISTRIBUTIONS; EQUIVALENT DIAMETER; EXPERIMENTAL MEASUREMENTS; GREEN ALGA; HYDROGEN GAS; IMAGINARY PARTS; IN-VIVO; INVERSE METHODS; LIQUID-FUEL PRODUCTION; LORENTZ-MIE THEORY; MASS FRACTION; MICRO-ALGAE; OCEAN REMOTE SENSING; POLYDISPERSE SPHERES; SCATTERING CROSS SECTION; SPHEROIDAL SHAPES; SURFACE AREA; T-MATRIX METHOD; TRANSFORMANTS;

ALGAE; CARBON DIOXIDE; CHLOROPHYLL; HYDROGEN; INVERSE PROBLEMS; MICROORGANISMS; OPTICAL CONSTANTS; PHOTOBIOREACTORS; PHOTOSYNTHESIS; PHYTOPLANKTON; PLASMONS; REFRACTIVE INDEX; REMOTE SENSING; SCATTERING;

BIOFUELS;

ABSORPTION; BIOFUEL; BIOREACTOR; CARBON CYCLE; GENETIC ALGORITHM; GREEN ALGA; MIE THEORY; OPTICAL PROPERTY; PHOTOSYNTHESIS; PHYTOPLANKTON; REFRACTIVE INDEX; SCATTERING; SPECTRAL ANALYSIS;

BOTRYOCOCCUS BRAUNII; CHLAMYDOMONAS REINHARDTII; CHLORELLA SP.; CHLOROCOCCUM LITTORALE; CHLOROPHYTA;

EID: 84869209652     PISSN: 00224073     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jqsrt.2012.08.012     Document Type: Article

References (75)

1. Pilon L., Berberoǧlu H., Kandilian R. Radiation transfer in photobiological carbon dioxide fixation and fuel production by microalgae. J Quant Spectrosc Radiat Transfer 2011, 112(17):2639-2660.
2. Berberoǧlu H., Pilon L. Experimental measurement of the radiation characteristics of Anabaena variabilis ATCC 29413-U and Rhodobacter sphaeroides ATCC 49419. Int J Hydrogen Energy 2007, 32(18):4772-4785.
3. +. Int J Hydrogen Energy 2008, 33(22):6467-6483.
4. Pottier L., Pruvost J., Deremetz J., Cornet J.F., Legrand J., Dussap C.G. A fully predictive model for one-dimensional light attenuation by Chlamydomonas reinhardtii in a torous photobioreactor. Biotechnol Bioengin 2005, 91:569-582.
5. Jonasz M., Fournier G.R. Light scattering by particles in water. theoretical and experimental foundations 2007, Academic Press, San Diego, CA.
6. Bricaud A., Morel A. Light attenuation and scattering by phytoplanktonic cells. a theoretical modeling. Appl Opt 1986, 25:571-580.
7. Mie G. Beiträge zur Optik trüber Medien, speziell kolloidaler Metallösungen. Ann Phys 1908, 25(3):377-445.
8. Mishchenko M.I., Travis L.D. Capabilities and limitations of a current FORTRAN implementation of the T-matrix method for randomly oriented, rotationally symmetric scatterers. J Quant Spectrosc Radiat Transfer 1998, 60(3):309-324.
9. 2 fixation and biofuel production. J Quant Spectrosc Radiat Transfer 2009, 110:1879-1893.
10. Ke B. Photosynthesis, photobiochemistry and photobiophysics 2001, Kluwer Academic Publishers, Dordrecht, The Netherlands.
11. Harris E.H. The chlamydomonas sourcebook, vol. 1 1989, Academic Press, San Diego, CA.
12. Bidigare R., Ondrusek M., Morrow J., Kiefer D. In vivo absorption properties of algal pigments. Ocean Opt X 1990, 1302:290-301.
13. Wang L.J., Weller C.L. Recent advances in extraction of nutraceuticals from plants. Trends Food Sci Technol 2006, 17(6):300-312.
14. Hosikian A., Lim S., Halim R., Danquah M.K. Chlorophyll extraction from microalgae: a review on the process engineering aspects. Int J Chem Eng 2010, 2010:11.
15. Porra R.J., Thompson W.A., Kriedemann P.E. Determination of accurate extinction coefficients and simultaneous equations for assaying chlorophylls a and b extracted with four different solvents. verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochim Biophys Acta (BBA): Bioenerget 1989, 975(3):384-394.
16. Ritchie R. Consistent sets of spectrophotometric chlorophyll equations for acetone, methanol and ethanol solvents. Photosynth Res 2006, 89:27-41.
17. Belcher J.H. Notes on the physiology of Botryococcus braunii Kiitzing. Arch Microbiol 1968, 61(4):335-346.
18. Tanoi T., Kawachi M., Watanabe M.M. Effects of carbon source on growth and morphology of Botryococcus braunii. J Appl Phycol 2011, 23(1):25-33.
19. Brown M.R., Jeffrey S.W. Biochemical composition of microalgae from the green algal classes Chlorophyceae and Prasinophyceae. 1. Amino acids, sugars and pigments. J Exp Mar Biol Ecol 1992, 161(1):91-113.
20. Hu Q., Kurano K., Kawachi M., Iwasaki I., Miyachi S. Ultrahigh cell density culture of a marine green algae Chlorococcum littorale in a flat plate photobioreactor. Appl Microbiol Biotechnol 1998, 49:655-662.
21. 2-tolerance. J Photochem Photobiol B: Biol 1995, 28(2):171-174.
22. Daniel K.J., Laurendeau N.M., Incropera F.P. Prediction of radiation absorption and scattering in turbid water bodies. ASME J Heat Transfer 1979, 101:63-67.
23. Agrawal B.M., Mengüç M.P. Forward and inverse analysis of single and multiple scattering of collimated radiation in an axisymmetric system. Int J Heat Mass Transfer 1991, 34:633-647.
24. Stramski D., Mobley C.D. Effect of microbial particles on oceanic optics: a database of single-particle optical properties. Limnol Oceanogr 1997, 42:538-549.
25. Bidigare R.R., Smith R.C., Baker K.S., Marra J. Oceanic primary production estimates from measurements of spectral irradiance and pigment concentrations. Global Biogeochem Cycles 1987, 1:171-186.
26. Quirantes A., Bernard S. Light scattering by marine algae. two-layer spherical and nonspherical models. J Quant Spectrosc Radiat Transfer 2004, 89(1-4):311-321.
27. Bernard S., Probyn T.A., Barlow R.G. Measured and modelled optical properties of particulate matter in the southern benguela. South Afr J Sci 2001, 97:410-420.
28. Stramski D., Bricaud A., Morel A. Modeling the inherent optical properties of the ocean based on the detailed composition of planktonic community. Appl Opt 2001, 40:2929-2945.
29. Bohren C.F., Huffman D.R. Absorption and scattering of light by small particles 1998, John Wiley & Sons, New York, NY.
30. Van De Hulst H.C. Light scattering by small particles 1957, Wiley, New York, NY.
31. Bricaud A., Ronald J., Zaneveld V., Kitchen J.C. Backscattering efficiency of coccolithophorids: use of a three-layered sphere model. Proc SPIE 1992, 1750:27-33.
32. Ronald J., Zaneveld V., Kitchen J.C. The variation in the inherent optical properties of phytoplankton near an absorption peak as determined by various models of cell structure. Proc SPIE 1995, 100:13309-13320.
33. Mishchenko M.I., Hovenier J.W., Travis L.D. Light scattering by nonspherical particles 2000, Academic Press, San Diego, CA.
34. Mishchenko M.I., Travis L.D. Light scattering by polydispersions of randomly oriented spheroids with sizes comparable to wavelengths to observation. Appl Opt 1994, 33(30):7206-7225.
35. Bricaud A., Bédhomme A.L., Morel A. Optical properties of diverse phytoplanktonic species: experimental results and theoretical interpretation. J Plankton Res 1988, 10:851-873.
36. Morel A., Ahn Y.H. Optics of heterotrophic nanoflagellates and ciliates: a tentative assessment of their scattering role in oceanic waters compared to those of bacterial and algal cells. J Mar Res 1991, 49:177-202.
37. Stramski D., Morel A., Bricaud A. Modeling the light attenuation and scattering by spherical phytoplanktonic cells: a retrieval of the bulk refractive index. Appl Opt 1988, 27:3954-3957.
38. Bryant F.D., Seiber B.A., Latimer P. Absolute optical cross sections of cells and chloroplasts. Arch Biochem Biophys 1969, 135:79-108.
39. Green R.E., Sosik H.M., Olson R.J., Durand M.D. Flow cytometric determination of size and complex refractive index for marine particles: comparison with independent and bulk estimates. Appl Opt 2003, 42:526-541.
40. Spinrad R.W., Brown J.F. Relative real refractive index of marine microorganisms: a technique for flow cytometric estimation. Appl Opt 1986, 25:1930-1934.
41. Gerhardt P., Beaman T.C., Corner T.R., Greenamyre J.T., Tisa L.S. Photometric immersion refractometry of bacterial spores. J Bacteriol 1982, 150:643-648.
42. Jonasz M., Fournier G., Stramski D. Photometric immersion refractometry: a method for determining the refractive index of marine microbial particles from beam attenuation. Appl Opt 1997, 36(18):4214-4225.
43. Barer R., Joseph S. Refractometry of living cells. Part I: basic principles. Quart J Microsc Sci 1954, 96:399-423.
44. DuRand M.D., Olson R.J. Diel patterns in optical properties of the chlorophyte Nannochloris sp.: relating individual-cell to bulk measurements. Limnol Oceanogr 1998, 43:1107-1118.
45. Cornet J.F., Dussap C.G., Dubertret G. A structured model for simulation of cultures of the cyanobacterium spirulina platensis in photobioreactors: I. Coupling between light transfer and growth kinetics. Biotechnol Bioengin 1992, 40(7):817-825.
46. Cornet J.F., Dussap C.G., Gross J.B., Binois C., Lasseur C. A simplified monodimensional approach for modeling coupling between radiant light transfer and growth kinetics in photobioreactors. Chem Eng Sci 1995, 50(9):1489-1500.
47. Duysens L.M. The flattening of the absorption spectra of suspensions as compared to that of solutions. Biochim Biophys Acta 1956, 19:1-12.
48. Melis A., Zhang L., Forestier M., Ghirardi M.L., Seibert M. Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii. Plant Physiol 2000, 117(1):129-139.
49. Polle J.E., Kanakagiri S.D., Melis A. tlal, a DNA insertional transformant of the green alga Chlamydomonas reinhardtii with a truncated light-harvesting chlorophyll antenna size. Planta 2003, 217(1):49-59.
50. Metzger P., Berkaloof C., Casadevall E., Coute A. Alkadiene- and botryococcene-producing races of wild strains of Botryococcus braunii. Phytochemistry 1985, 24(10):2305-2320.
51. Sawayama S., Inoue S., Yokoyama S. Continuous culture of hydrocarbon-rich microalga Botryococcus braunii in secondarily treated sewage. Appl Microbiol Biotechnol 1994, 41(6):729-731.
52. Sheehan J, Dunahay T, Benemann J, Roessler P. A look back at the US Department of Energy's aquatic species program: biodiesel from algae. Technical report TP-580-24190, NREL; 1998.
53. Chisti Y. Biodiesel from algae. Biotechnol Adv 2007, 25:294-306.
54. 2 by Chlorella sp. HA-1 in a semi-continuous and series reactor system. J Microbiol Biotechnol 2005, 15(3):461-465.
55. 2 by a high-density culture of Chlorella sp. in a semicontinuous photobioreactor. Bioresour Technol 2008, 99(9):3389-3396.
56. 2-tolerant fast growing marine microalga suitable for high density culture. J Mar Biotechnol 1993, 1:21-25.
57. Quirantes A., Bernard S. Light-scattering methods for modelling algal particles as a collection of coated and/or nonspherical scatterers. J Quant Spectrosc Radiat Transfer 2006, 100:315-324.
58. Baird M.E. Numerical approximations of the mean absorption cross-section of a variety of randomly oriented microalgal shapes. J Math Biol 2003, 47:325-336.
59. Rasband WS. ImageJ, U.S. National Institute of Health, Bethesda, MD, USA; 1997-2007 http://rsb.info.nih.gov/ij/.
60. Modest M.F. Radiative heat transfer 2003, Academic Press, San Diego, CA.
61. 2 mitigation. Int J Hydrogen Energy 2007, 32(13):2273-2285.
62. Eroglu E., Melis A. "Density equilibrium" method for the quantitative and rapid in situ determination of lipid, hydrocarbon, or biopolymer content in microorganisms. Biotechnol Bioeng 2009, 102(5):1406-1415.
63. Baeck T. Genetic algorithms in theory and practice 1996, The Oxford University Press, Oxford, UK.
64. Charbonneau P. Genetic algorithms in astronomy and astrophysics. Astrophys J 1995, 101:309.
65. Charbonneau P, Knapp B. A User's guide to PIKAIA 1.0, Technical report. NCAR technical note 418+IA, National Center for Atmospheric Research; 1995.
66. Charbonneau P. An introduction to genetic algorithms for numerical optimization. Technical report. NCAR Technical note 450+IA, National Center for Atmospheric Research; 2002.
67. Charbonneau P. Release notes for PIKAIA 1.2. Technical report. NCAR technical note 451+STR, National Center for Atmospheric Research; 2002.
68. Morel A., Bricaud A. Inherent optical properties of algal cells including picoplankton: theoretical and experimental results. Can Bull Fisher Aquat Sci 1986, 521-560.
69. Zhernovaya O., Sydoruk O., Tuchin V., Douplik A. The refractive index of human hemoglobin in the visible range. Phys Med Biol 2011, 56(13):4013-4021.
70. Hale G.M., Querry M.R. Optical constants of water in the 200-nm to 200-m wavelength region. Appl Opt 1973, 12:555563.
71. Ma X., Lu J.Q., Brock R.S., Jacobs K.M., Yang P., Hu H.H. Determination of complex refractive index of polystyrene microspheres from 370 to 1610nm. Phys Med Biol 2003, 48:4165-4172.
72. Nikolov I.D., Ivanov C.D. Optical plastic refractive measurements in the visible and the near-infrared regions. Appl Opt 2000, 39(13):2067-2070.
73. Aas E. Refractive index of phytoplankton derived from its metabolite composition. J Plankton Res 1996, 18(12):2223-2249.
74. Ashokkumar V., Rengasamy R. Mass culture of Botryococcus braunii kutz. under open raceway pond for biofuel production. Bioresour Technol 2012, 104:394-399.
75. Pilon L. Optical constants of microalgae for biofuel production between 400 and 750nm; 2012 and http://repositories.cdlib.org/escholarship/.