-
1
-
-
0029692069
-
Lytic transglycosylases
-
Höltje, J. V. (1996) Lytic transglycosylases EXS 75, 425-429
-
(1996)
EXS
, vol.75
, pp. 425-429
-
-
Höltje, J.V.1
-
2
-
-
39649099979
-
Lytic transglycosylases: Bacterial space-making autolysins
-
Scheurwater, E., Reid, C. W., and Clarke, A. J. (2008) Lytic transglycosylases: Bacterial space-making autolysins Int. J. Biochem. Cell Biol. 40, 586-591
-
(2008)
Int. J. Biochem. Cell Biol.
, vol.40
, pp. 586-591
-
-
Scheurwater, E.1
Reid, C.W.2
Clarke, A.J.3
-
3
-
-
84455162073
-
Peptidoglycan hydrolases of Escherichia coli
-
van Heijenoort, J. (2011) Peptidoglycan hydrolases of Escherichia coli Microbiol. Mol. Biol. Rev. 75, 636-663
-
(2011)
Microbiol. Mol. Biol. Rev.
, vol.75
, pp. 636-663
-
-
Van Heijenoort, J.1
-
4
-
-
0035140936
-
Identification of four families of peptidoglycan lytic transglycosylases
-
Blackburn, N. T. and Clarke, A. J. (2001) Identification of four families of peptidoglycan lytic transglycosylases J. Mol. Evol. 52, 78-84
-
(2001)
J. Mol. Evol.
, vol.52
, pp. 78-84
-
-
Blackburn, N.T.1
Clarke, A.J.2
-
5
-
-
0028091202
-
Doughnut-shaped structure of a bacterial muramidase revealed by X-ray crystallography
-
Thunnissen, A. M. W. H., Dijkstra, A. J., Kalk, K. H., Rozeboom, H. J., Engel, H., Keck, W., and Dijkstra, B. W. (1994) Doughnut-shaped structure of a bacterial muramidase revealed by X-ray crystallography Nature 367, 750-753
-
(1994)
Nature
, vol.367
, pp. 750-753
-
-
Thunnissen, A.M.W.H.1
Dijkstra, A.J.2
Kalk, K.H.3
Rozeboom, H.J.4
Engel, H.5
Keck, W.6
Dijkstra, B.W.7
-
6
-
-
0029739727
-
Identification of new members of the lytic transglycosylase family in Haemophilus influenzae and Escherichia coli
-
Dijkstra, A. J. and Keck, W. (1996) Identification of new members of the lytic transglycosylase family in Haemophilus influenzae and Escherichia coli Microb. Drug Resist. 2, 141-145
-
(1996)
Microb. Drug Resist.
, vol.2
, pp. 141-145
-
-
Dijkstra, A.J.1
Keck, W.2
-
7
-
-
0031748682
-
Membrane-bound lytic endotransglycosylase in Escherichia coli
-
Kraft, A. R., Templin, M. F., and Höltje, J. V. (1998) Membrane-bound lytic endotransglycosylase in Escherichia coli J. Bacteriol. 180, 3441-3447
-
(1998)
J. Bacteriol.
, vol.180
, pp. 3441-3447
-
-
Kraft, A.R.1
Templin, M.F.2
Höltje, J.V.3
-
8
-
-
24944507285
-
Crystal structure of MltA from reveals a unique lytic transglycosylase fold
-
van Straaten, K. E., Dijkstra, B. W., Vollmer, W., and Thunnissen, A. M. W. H. (2005) Crystal structure of MltA from reveals a unique lytic transglycosylase fold J. Mol. Biol. 352, 1068-1080
-
(2005)
J. Mol. Biol.
, vol.352
, pp. 1068-1080
-
-
Van Straaten, K.E.1
Dijkstra, B.W.2
Vollmer, W.3
Thunnissen, A.M.W.H.4
-
9
-
-
34547138663
-
Structure of Escherichia coli lytic transglycosylase MltA with bound chitohexaose: Implications for peptidoglycan binding and cleavage
-
van Straaten, K. E., Barends, T. R., Dijkstra, B. W., and Thunnissen, A. M. W. H. (2007) Structure of Escherichia coli lytic transglycosylase MltA with bound chitohexaose: Implications for peptidoglycan binding and cleavage J. Biol. Chem. 282, 21197-21205
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 21197-21205
-
-
Van Straaten, K.E.1
Barends, T.R.2
Dijkstra, B.W.3
Thunnissen, A.M.W.H.4
-
10
-
-
0342901668
-
Crystal structure of Escherichia coli lytic transglycosylase Slt35 reveals a lysozyme-like catalytic domain with an EF-hand
-
van Asselt, E. J., Dijkstra, A. J., Kalk, K. H., Takacs, B., Keck, W., and Dijkstra, B. W. (1999) Crystal structure of Escherichia coli lytic transglycosylase Slt35 reveals a lysozyme-like catalytic domain with an EF-hand Structure 7, 1167-1180
-
(1999)
Structure
, vol.7
, pp. 1167-1180
-
-
Van Asselt, E.J.1
Dijkstra, A.J.2
Kalk, K.H.3
Takacs, B.4
Keck, W.5
Dijkstra, B.W.6
-
11
-
-
51749085075
-
Lytic transglycosylase MltB of Escherichia coli and its role in recycling of peptidoglycan strands of bacterial cell wall
-
Suvorov, M., Lee, M., Hesek, D., Boggess, B., and Mobashery, S. (2008) Lytic transglycosylase MltB of Escherichia coli and its role in recycling of peptidoglycan strands of bacterial cell wall J. Am. Chem. Soc. 130, 11878-11879
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 11878-11879
-
-
Suvorov, M.1
Lee, M.2
Hesek, D.3
Boggess, B.4
Mobashery, S.5
-
12
-
-
43749112959
-
The C-terminal domain of Escherichia coli YfhD functions as a lytic transglycosylase
-
Scheurwater, E. M. and Clarke, A. J. (2008) The C-terminal domain of Escherichia coli YfhD functions as a lytic transglycosylase J. Biol. Chem. 283, 8363-8373
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 8363-8373
-
-
Scheurwater, E.M.1
Clarke, A.J.2
-
13
-
-
77951990234
-
Purification, crystallization and preliminary X-ray diffraction analysis of the lytic transglycosylase MltF from Escherichia coli
-
Madoori, P. K. and Thunnissen, A. M. W. H. (2010) Purification, crystallization and preliminary X-ray diffraction analysis of the lytic transglycosylase MltF from Escherichia coli Acta Crystallogr. F66, 534-538
-
(2010)
Acta Crystallogr.
, vol.66
, pp. 534-538
-
-
Madoori, P.K.1
Thunnissen, A.M.W.H.2
-
14
-
-
0029052863
-
The catalytic domain of a bacterial lytic transglycosylase defines a novel class of lysozymes
-
Thunnissen, A. M. W. H., Isaacs, N. W., and Dijkstra, B. W. (1995) The catalytic domain of a bacterial lytic transglycosylase defines a novel class of lysozymes Proteins 22, 245-258
-
(1995)
Proteins
, vol.22
, pp. 245-258
-
-
Thunnissen, A.M.W.H.1
Isaacs, N.W.2
Dijkstra, B.W.3
-
15
-
-
0028874610
-
Structure of the 70-kDa soluble lytic transglycosylase complexed with bulgecin A: Implications for the enzymatic mechanism
-
Thunnissen, A. M. W. H., Rozeboom, H. J., Kalk, K. H., and Dijkstra, B. W. (1995) Structure of the 70-kDa soluble lytic transglycosylase complexed with bulgecin A: Implications for the enzymatic mechanism Biochemistry 34, 12729-12737
-
(1995)
Biochemistry
, vol.34
, pp. 12729-12737
-
-
Thunnissen, A.M.W.H.1
Rozeboom, H.J.2
Kalk, K.H.3
Dijkstra, B.W.4
-
16
-
-
0033609769
-
High resolution crystal structures of the Escherichia coli lytic transglycosylase Slt70 and its complex with a peptidoglycan fragment
-
van Asselt, E. J., Thunnissen, A. M. W. H., and Dijkstra, B. W. (1999) High resolution crystal structures of the Escherichia coli lytic transglycosylase Slt70 and its complex with a peptidoglycan fragment J. Mol. Biol. 291, 877-898
-
(1999)
J. Mol. Biol.
, vol.291
, pp. 877-898
-
-
Van Asselt, E.J.1
Thunnissen, A.M.W.H.2
Dijkstra, B.W.3
-
17
-
-
0034728363
-
Crystallographic studies of the interactions of Escherichia coli lytic transglycosylase Slt35 with peptidoglycan
-
van Asselt, E. J., Kalk, K. H., and Dijkstra, B. W. (2000) Crystallographic studies of the interactions of Escherichia coli lytic transglycosylase Slt35 with peptidoglycan Biochemistry 39, 1924-1934
-
(2000)
Biochemistry
, vol.39
, pp. 1924-1934
-
-
Van Asselt, E.J.1
Kalk, K.H.2
Dijkstra, B.W.3
-
18
-
-
0031015902
-
Nomenclature for sugar-binding subsites in glycosyl hydrolases
-
Davies, G. J., Wilson, K. S., and Henrissat, B. (1997) Nomenclature for sugar-binding subsites in glycosyl hydrolases Biochem. J. 321 (Pt 2) 557-559
-
(1997)
Biochem. J.
, vol.321
, Issue.PART 2
, pp. 557-559
-
-
Davies, G.J.1
Wilson, K.S.2
Henrissat, B.3
-
19
-
-
4444272536
-
Inhibition of membrane-bound lytic transglycosylase B by NAG-thiazoline
-
Reid, C. W., Blackburn, N. T., Legaree, B. A., Auzanneau, F. I., and Clarke, A. J. (2004) Inhibition of membrane-bound lytic transglycosylase B by NAG-thiazoline FEBS Lett. 574, 73-79
-
(2004)
FEBS Lett.
, vol.574
, pp. 73-79
-
-
Reid, C.W.1
Blackburn, N.T.2
Legaree, B.A.3
Auzanneau, F.I.4
Clarke, A.J.5
-
20
-
-
34948837924
-
Role of Ser216 in the mechanism of action of membrane-bound lytic transglycosylase B: Further evidence for substrate-assisted catalysis
-
Reid, C. W., Legaree, B. A., and Clarke, A. J. (2007) Role of Ser216 in the mechanism of action of membrane-bound lytic transglycosylase B: Further evidence for substrate-assisted catalysis FEBS Lett. 581, 4988-4992
-
(2007)
FEBS Lett.
, vol.581
, pp. 4988-4992
-
-
Reid, C.W.1
Legaree, B.A.2
Clarke, A.J.3
-
21
-
-
79953198237
-
High-resolution crystal structure of MltE, an outer membrane-anchored endolytic peptidoglycan lytic transglycosylase from Escherichia coli
-
Artola-Recolons, C., Carrasco-López, C., Llarrull, L. I., Kumarasiri, M., Lastochkin, E., Martinez de Ilarduya, I., Meindl, K., Usón, I., Mobashery, S., and Hermoso, J. A. (2011) High-resolution crystal structure of MltE, an outer membrane-anchored endolytic peptidoglycan lytic transglycosylase from Escherichia coli Biochemistry 50, 2384-2386
-
(2011)
Biochemistry
, vol.50
, pp. 2384-2386
-
-
Artola-Recolons, C.1
Carrasco-López, C.2
Llarrull, L.I.3
Kumarasiri, M.4
Lastochkin, E.5
Martinez De Ilarduya, I.6
Meindl, K.7
Usón, I.8
Mobashery, S.9
Hermoso, J.A.10
-
22
-
-
0026668027
-
A murein hydrolase is the specific target of bulgecin in Escherichia coli
-
Templin, M. F., Edwards, D. H., and Holtje, J. V. (1992) A murein hydrolase is the specific target of bulgecin in Escherichia coli J. Biol. Chem. 267, 20039-20043
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 20039-20043
-
-
Templin, M.F.1
Edwards, D.H.2
Holtje, J.V.3
-
23
-
-
34548319070
-
High-throughput cloning and expression in recalcitrant bacteria
-
Geertsma, E. R. and Poolman, B. (2007) High-throughput cloning and expression in recalcitrant bacteria Nat. Methods 4, 705-707
-
(2007)
Nat. Methods
, vol.4
, pp. 705-707
-
-
Geertsma, E.R.1
Poolman, B.2
-
24
-
-
0014060395
-
Measurement of bacteriolytic enzymes
-
Hash, J. H. (1967) Measurement of bacteriolytic enzymes J. Bacteriol. 93, 1201-1202
-
(1967)
J. Bacteriol.
, vol.93
, pp. 1201-1202
-
-
Hash, J.H.1
-
26
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4 ()
-
Collaborative Computational Project, Number 4 (1994) The CCP4 suite: Programs for protein crystallography Acta Crystallogr. D50, 760-763
-
(1994)
Acta Crystallogr.
, vol.50
, pp. 760-763
-
-
-
27
-
-
0033082065
-
Optimizing shake-and-bake for proteins
-
Weeks, C. M. and Miller, R. (1999) Optimizing shake-and-bake for proteins Acta Crystallogr. D55, 492-500
-
(1999)
Acta Crystallogr.
, vol.55
, pp. 492-500
-
-
Weeks, C.M.1
Miller, R.2
-
28
-
-
0242460576
-
Generation, representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0
-
Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M., and Paciorek, W. (2003) Generation, representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0 Acta Crystallogr. D59, 2023-2030
-
(2003)
Acta Crystallogr.
, vol.59
, pp. 2023-2030
-
-
Bricogne, G.1
Vonrhein, C.2
Flensburg, C.3
Schiltz, M.4
Paciorek, W.5
-
29
-
-
0030038464
-
Methods used in the structure determination of bovine mitochondrial F1 ATPase
-
Abrahams, J. P. and Leslie, A. G. (1996) Methods used in the structure determination of bovine mitochondrial F1 ATPase Acta Crystallogr. D52, 30-42
-
(1996)
Acta Crystallogr.
, vol.52
, pp. 30-42
-
-
Abrahams, J.P.1
Leslie, A.G.2
-
30
-
-
37349110736
-
ARP/wARP and molecular replacement: The next generation
-
Cohen, S. X., Ben Jelloul, M., Long, F., Vagin, A., Knipscheer, P., Lebbink, J., Sixma, T. K., Lamzin, V. S., Murshudov, G. N., and Perrakis, A. (2008) ARP/wARP and molecular replacement: The next generation Acta Crystallogr. D64, 49-60
-
(2008)
Acta Crystallogr.
, vol.64
, pp. 49-60
-
-
Cohen, S.X.1
Ben Jelloul, M.2
Long, F.3
Vagin, A.4
Knipscheer, P.5
Lebbink, J.6
Sixma, T.K.7
Lamzin, V.S.8
Murshudov, G.N.9
Perrakis, A.10
-
31
-
-
37049014272
-
Version 1.2 of the crystallography and NMR system
-
Brünger, A. T. (2007) Version 1.2 of the crystallography and NMR system Nat. Protoc. 2, 2728-2733
-
(2007)
Nat. Protoc.
, vol.2
, pp. 2728-2733
-
-
Brünger, A.T.1
-
32
-
-
0027879008
-
Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants
-
Kabsch, W. (1993) Automatic processing of rotation diffraction data from crystals of initially unknown symmetry and cell constants J. Appl. Crystallogr. 26, 795-800
-
(1993)
J. Appl. Crystallogr.
, vol.26
, pp. 795-800
-
-
Kabsch, W.1
-
33
-
-
74549194551
-
Molecular replacement with MOLREP
-
Vagin, A. and Teplyakov, A. (2010) Molecular replacement with MOLREP Acta Crystallogr. D66, 22-25
-
(2010)
Acta Crystallogr.
, vol.66
, pp. 22-25
-
-
Vagin, A.1
Teplyakov, A.2
-
34
-
-
79953763877
-
REFMAC5 for the refinement of macromolecular crystal structures
-
Murshudov, G. N., Skubák, P., Lebedev, A. A., Pannu, N. S., Steiner, R. A., Nicholls, R. A., Winn, M. D., Long, F., and Vagin, A. A. (2011) REFMAC5 for the refinement of macromolecular crystal structures Acta Crystallogr. D67, 355-367
-
(2011)
Acta Crystallogr.
, vol.67
, pp. 355-367
-
-
Murshudov, G.N.1
Skubák, P.2
Lebedev, A.A.3
Pannu, N.S.4
Steiner, R.A.5
Nicholls, R.A.6
Winn, M.D.7
Long, F.8
Vagin, A.A.9
-
35
-
-
13244281317
-
Coot: Model-building tools for molecular graphics
-
Emsley, P. and Cowtan, K. (2004) Coot: Model-building tools for molecular graphics Acta Crystallogr. D60, 2126-2132
-
(2004)
Acta Crystallogr.
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
36
-
-
76449098262
-
PHENIX: A comprehensive python-based system for macromolecular structure solution
-
Adams, P. D., Afonine, P. V., Bunkoczi, G., Chen, V. B., and Davis, I. W. 2010, PHENIX: A comprehensive python-based system for macromolecular structure solution Acta Crystallogr. D66, 213-221
-
(2010)
Acta Crystallogr.
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
-
37
-
-
0035182073
-
Use of TLS parameters to model anisotropic displacements in macromolecular refinement
-
Winn, M. D., Isupov, M. N., and Murshudov, G. N. (2001) Use of TLS parameters to model anisotropic displacements in macromolecular refinement Acta Crystallogr. D57, 122-133
-
(2001)
Acta Crystallogr.
, vol.57
, pp. 122-133
-
-
Winn, M.D.1
Isupov, M.N.2
Murshudov, G.N.3
-
38
-
-
34547592557
-
MolProbity: All-atom contacts and structure validation for proteins and nucleic acids
-
Davis, I. W., Leaver-Fay, A., Chen, V. B., Block, J. N., Kapral, G. J., Wang, X., Murray, L. W., Arendall, W. B., 3rd, Snoeyink, J., Richardson, J. S., and Richardson, D. C. (2007) MolProbity: All-atom contacts and structure validation for proteins and nucleic acids Nucleic Acids Res. 35, W375-W383
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Davis, I.W.1
Leaver-Fay, A.2
Chen, V.B.3
Block, J.N.4
Kapral, G.J.5
Wang, X.6
Murray, L.W.7
Arendall III, W.B.8
Snoeyink, J.9
Richardson, J.S.10
Richardson, D.C.11
-
39
-
-
0043123123
-
Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments
-
Poirot, O., O'Toole, E., and Notredame, C. (2003) Tcoffee@igs: A web server for computing, evaluating and combining multiple sequence alignments Nucleic Acids Res. 31, 3503-3506
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3503-3506
-
-
Poirot, O.1
O'Toole, E.2
Notredame, C.3
-
40
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel, E. and Henrick, K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions Acta Crystallogr. D60, 2256-2268
-
(2004)
Acta Crystallogr.
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
41
-
-
84874756729
-
-
The PyMOL molecular graphics system, version 1.5.0.1.
-
Schrödinger, L. (2012) The PyMOL molecular graphics system, version 1.5.0.1.
-
(2012)
-
-
Schrödinger, L.1
-
42
-
-
84855363564
-
Regulation of biofilm components in Salmonella enterica serovar typhimurium by lytic transglycosylases involved in cell wall turnover
-
Monteiro, C., Fang, X., Ahmad, I., Gomelsky, M., and Römling, U. (2011) Regulation of biofilm components in Salmonella enterica serovar typhimurium by lytic transglycosylases involved in cell wall turnover J. Bacteriol. 193, 6443-6451
-
(2011)
J. Bacteriol.
, vol.193
, pp. 6443-6451
-
-
Monteiro, C.1
Fang, X.2
Ahmad, I.3
Gomelsky, M.4
Römling, U.5
|