Architectural synthesis of flow-based microfluidic large-scale integration biochips

CASES'12 - Proceedings of the 2012 ACM International Conference on Compilers, Architectures and Synthesis for Embedded Systems, Co-located with ESWEEK

Volumn , Issue , 2012, Pages 181-190

  Minhass, Wajid Hassan ^a   Pop, Paul ^a   Madsen, Jan ^a   Blaga, Felician Stefan ^a  

^a TECHNICAL UNIVERSITY OF DENMARK   (Denmark)

Author keywords

Architecture; Biochips; Flow based; Microfluidic; Synthesis

Indexed keywords

ARCHITECTURAL SYNTHESIS; BIO-CHEMICAL APPLICATIONS; BIOCHEMICAL ANALYSIS; BIOCHEMICAL ANALYZERS; COMPLETION TIME; COMPLEX UNITS; COMPONENT ALLOCATION; FLOW-BASED; INTEGRATED MICROVALVES; MANUAL TECHNIQUES; MANUFACTURING TECHNOLOGIES; MICRO FLUIDIC BIOCHIPS; MICRO PUMP; MICRO VALVES; MICROFLUIDIC CHANNEL; MICROFLUIDIC COMPONENTS; MICROFLUIDIC LARGE-SCALE INTEGRATION; MOORE'S LAW; NETLIST; ON CHIPS; PHYSICAL SYNTHESIS; REAL-LIFE APPLICATIONS; SOFT LITHOGRAPHY; SYNTHETIC BENCHMARK; TOPDOWN;

ARCHITECTURE; BENCHMARKING; BIOASSAY; EMBEDDED SYSTEMS; MICROFLUIDICS; PROGRAM COMPILERS; PUMPS; SYNTHESIS (CHEMICAL);

BIOCHIPS;

EID: 84869046993     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1145/2380403.2380437     Document Type: Conference Paper

References (19)

1. AutoCAD Products. http://usa.autodesk.com/autocadproducts/.
2. Designing your own device: Basic design rules. http://www.stanford.edu/ group/foundry/.
3. mLSI Biochips. https://sites.google.com/site/mlsibiochips/.
4. N. Amin, W. Thies, and S. Amarasinghe. Computer-aided design for microfluidic chips based on multilayer soft lithography. In Proceedings of the IEEE International Conference on Computer Design, 2009.
5. V. Ananthanarayanan and W. Thies. Biocoder: A programming language for standardizing and automating biology protocols. Journal of Biological Engineering, 4(13), 2010.
6. K. Chakrabarty and T. Xu. Digital Microfluidic Biochips: Design Automation and Optimization. CRC Press, Boca Raton, FL, 2010.
7. H. Chou, M. Unger, and S. Quake. A microfabricated rotary pump. Biomedical Microdevices, 3, 2001.
8. P. Coussy and A. Morawiec. High-level synthesis: From algorithm to digital circuit. Springer, 2008.
9. J. W. Hong and S. R. Quake. Integrated nanoliter systems. Nature Biotechnology, 21:1179-1183, 2003.
10. Y. C. Lim, A. Z. Kouzani, and W. Duan. Lab-on-a-chip: a component view. Journal of microsystems technology, 16(12), December 2010.
11. D. Mark, S. Haeberle, G. Roth, F. von Stetten, and R. Zengerle. Microfluidic lab-on-a-chip platforms: requirements, characteristics and applications. Chem. Soc. Rev., 39:1153-1182, 2010.
12. J. Melin and S. Quake. Microfluidic large-scale integration: The evolution of design rules for biological automation. Annual Reviews in Biophysics and Biomolecular Structure, 36:213-231, 2007.
13. G. D. Micheli. Synthesis and optimization of digital circuits. McGraw-Hill, New York, 1994.
14. W. H. Minhass, P. Pop, and J. Madsen. System-level modeling and synthesis of flow-based microfluidic biochips. In Proc. of the International Conference on Compilers, Architectures and Synthesis of Embedded Systems (CASES), 2011.
15. J. M. Perkel. Microfluidics - bringing new things to life science. Science, November 2008.
16. S. M. Sait and H. Youssef. VLSI physical design automation: theory and practice. World Scientific Publishing Co. Pte. Ltd., 1999.
17. J. Siegrist, M. Amasia, N. Singh, D. Banerjee, and M. Madou. Numerical modeling and experimental validation of uniform microchamber filling in centrifugal microfluidics. Lab Chip, 10:876-886, 2010.
18. D. Ullman. NP-complete scheduling problems. Journal of Computing System Science, 10:384-393, 1975.
19. J. P. Urbanski, W. Thies, C. Rhodes, S. Amarasinghe, and T. Thorsen. Digital microfluidics using soft lithography. Lab Chip, 6:96-104, 2006.