Complete genome sequences of two Helicobacter pylori bacteriophages isolated from Japanese patients

Journal of Virology

Volumn 86, Issue 20, 2012, Pages 11400-11401

  Uchiyama, Jumpei ^a   Takeuchi, Hiroaki ^b   Kato, Shin Ichiro ^a   Takemura Uchiyama, Iyo ^a,b   Ujihara, Takako ^a   Daibata, Masanori ^a   Matsuzaki, Shigenobu ^a  

^a KOCHI UNIVERSITY   (Japan)

^b KOCHI MEDICAL SCHOOL   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GENOMIC DNA;

ARTICLE; BACTERIAL STRAIN; BACTERIOPHAGE; BACTERIUM ISOLATE; DENSITY GRADIENT CENTRIFUGATION; DNA SEQUENCE; GENE SEQUENCE; GENE TRANSFER; GEOGRAPHY; HELICOBACTER INFECTION; HELICOBACTER PYLORI; HUMAN; JAPANESE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

BACTERIOPHAGES; BASE SEQUENCE; DNA, VIRAL; EVOLUTION, MOLECULAR; GENOME, VIRAL; HELICOBACTER PYLORI; HUMANS; JAPAN; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA;

HELICOBACTER PYLORI;

EID: 84869035489     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01767-12     Document Type: Article

References (12)

1. Besemer J, Borodovsky M. 2005. GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses. Nucleic Acids Res. 33:W451-W454.
2. Brown LM. 2000. Helicobacter pylori: epidemiology and routes of transmission. Epidemiol. Rev. 22:283-297.
3. Hyatt D, et al. 2010. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 11:119.
4. Lehours P, et al. 2011. Genome sequencing reveals a phage in Helicobacter pylori. mBio 2:e00239-11. doi:10.1128/mBio.00239-11.
5. Luo CH, Chiou PY, Yang CY, Lin NT. 2012. Genome, integration, and transduction of a novel temperate phage of Helicobacter pylori. J. Virol. doi:10.1128/JVI.00446-12.
6. Marchler-Bauer A, et al. 2011. CDD: a Conserved Domain Database for the functional annotation of proteins. Nucleic Acids Res. 39:D225-D229.
7. Paterson S, et al. 2010. Antagonistic coevolution accelerates molecular evolution. Nature 464:275-278.
8. Peek RM, Blaser MJ. 2002. Helicobacter pylori and gastrointestinal tract adenocarcinomas. Nat. Rev. Cancer 2:28-37.
9. Schmid EN, von Recklinghausen G, Ansorg R. 1990. Bacteriophages in Helicobacter (Campylobacter) pylori. J. Med. Microbiol. 32:101-104.
10. Suzuki R, Shiota S, Yamaoka Y. 2012. Molecular epidemiology, population genetics, and pathogenic role of Helicobacter pylori. Infect. Genet. Evol. 12:203-213.
11. Uchiyama J, et al. 2011. Improved adsorption of an Enterococcus faecalis bacteriophage_EF24C with a spontaneous point mutation. PLoS One 6:e26648. doi:10.1371/journal.pone.0026648.
12. Wan XQ, et al. 2011. Isolation of a wild-type virulent phage of Helicobacter pylori and its simulated treatments of gastrointestinal Hp in vitro. Nan Fang Yi Ke Da Xue Xue Bao 31:304-307. (In Chinese.)