Complete genome sequence of Pectobacterium carotovorum subsp. Carotovorum bacteriophage My1

Journal of Virology

Volumn 86, Issue 20, 2012, Pages 11410-11411

  Lee, Dong Hwan ^a   Lee, Ju Hoon ^b   Shin, Hakdong ^c   Ji, Samnyu ^a   Roh, Eunjung ^a   Jung, Kyusuk ^a   Ryu, Sangryeol ^c   Choi, Jaehyuk ^a   Heu, Sunggi ^a  

^a National Institute of Animal Science   (South Korea)

^b Kyung Hee University   (South Korea)

^c Seoul National University   (South Korea)

Author keywords

[No Author keywords available]

Indexed keywords

DNA POLYMERASE; DNA PRIMASE; ENDONUCLEASE; GENOMIC DNA; HELICASE; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; PROTEIN SERINE THREONINE KINASE; RIBONUCLEASE H; SINGLE STRANDED DNA; TRANSFER RNA;

ARTICLE; BACTERIOPHAGE; BACTERIUM ISOLATE; DNA MODIFICATION; DNA REPLICATION; DNA STRUCTURE; GENE SEQUENCE; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PECTOBACTERIUM CAROTOVORUM; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY;

BASE SEQUENCE; DNA, VIRAL; GENOME, VIRAL; MOLECULAR SEQUENCE DATA; PECTOBACTERIUM CAROTOVORUM; PLANTS; SEQUENCE ANALYSIS, DNA; SIPHOVIRIDAE;

BACTERIA (MICROORGANISMS); ENTEROBACTERIACEAE; PECTOBACTERIUM; PECTOBACTERIUM CAROTOVORUM SUBSP. CAROTOVORUM; SIPHOVIRIDAE;

EID: 84869015787     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.01987-12     Document Type: Article

References (22)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Besemer J, Lomsadze A, Borodovsky M. 2001. GeneMarkS: a selftraining method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions. Nucleic Acids Res. 29:2607-2618.
3. Delcher AL, Bratke KA, Powers EC, Salzberg SL. 2007. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 23:673-679.
4. Gill JJ, Svircev AM, Smith R, Castle AJ. 2003. Bacteriophages of Erwinia amylovora. Appl. Environ. Microbiol. 69:2133-2138.
5. Gnanamanickam SS. 2006. Plant-associated bacteria. Springer, Dordrecht, The Netherlands.
6. Hauben L, et al. 1998. Phylogenetic position of phytopathogens within the Enterobacteriaceae. Syst. Appl. Microbiol. 21:384-397.
7. Hong J, et al. 2008. Identification of host receptor and receptor-binding module of a newly sequenced T5-like phage EPS7. FEMS Microbiol. Lett. 289:202-209.
8. Jones JB, et al. 2007. Bacteriophages for plant disease control. Annu. Rev. Phytopathol. 45:245-262.
9. Kim M, Ryu S. 2011. Characterization of a T5-like coliphage, SPC35, and differential development of resistance to SPC35 in Salmonella enterica serovar Typhimurium and Escherichia coli. Appl. Environ. Microbiol. 77: 2042-2050.
10. Lee JH, et al. 2012. Complete genome sequence of phytopathogenic Pectobacterium carotovorum subsp. carotovorum bacteriophage PP1. J. Virol. 86:8899-8900.
11. Lehman SM, Kropinski AM, Castle AJ, Svircev AM. 2009. Complete genome of the broad-host-range Erwinia amylovora phage _Ea21-4 and its relationship to Salmonella phage Felix O1. Appl. Environ. Microbiol. 75:2139-2147.
12. Müller I, Kube M, Reinhardt R, Jelkmann W, Geider K. 2011. Complete genome sequences of three Erwinia amylovora phages isolated in North America and a bacteriophage induced from an Erwinia tasmaniensis strain. J. Bacteriol. 193:795-796.
13. Pérombelon MCM. 2002. Potato diseases caused by soft rot erwinias: an overview of pathogenesis. Plant Pathol. 51:1-12.
14. Ravensdale M, Blom T, Gracia-Garza J, Svircev A, Smith R. 2007. Bacteriophages and the control of Erwinia carotovora subsp. carotovora. Can. J. Plant Pathol. 29:121-130.
15. Sambrook J, Russell DW. 2001. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
16. Schattner P, Brooks AN, Lowe TM. 2005. The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs. Nucleic Acids Res. 33:W686-W689.
17. Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL. 2001. A probabilistic method for identifying start codons in bacterial genomes. Bioinformatics 17:1123-1130.
18. Toth I, Perombelon M, Salmond G. 1993. Bacteriophage _KP mediated generalized transduction in Erwinia carotovora subspecies carotovora. J. Gen. Microbiol. 139:2705-2709.
19. Toth IK, Bell KS, Holeva MC, Birch PR. 2003. Soft rot erwiniae: from genes to genomes. Mol. Plant Pathol. 4:17-30.
20. Wang J, et al. 2005. Complete genome sequence of bacteriophage T5. Virology 332:45-65.
21. Wilcox SA, Toder R, Foster JW. 1996. Rapid isolation of recombinant lambda phageDNAfor use in fluorescence in situ hybridization. Chromosome Res. 4:397-398.
22. Zdobnov EM, Apweiler R. 2001. InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.