An optimized method for elution of enteroviral RNA from a cellulose-based substrate

Journal of Virological Methods

Volumn 186, Issue 1-2, 2012, Pages 62-67

  Li, Yan ^a   Yoshida, Hiromu ^b   Wang, Lu ^c   Tao, Zexin ^a   Wang, Haiyan ^a   Lin, Xiaojuan ^a   Xu, Aiqiang ^a,d  

^a Shandong Center for Disease Control and Prevention   (China)

^b NATIONAL INSTITUTE OF INFECTIOUS DISEASES   (Japan)

^c The Health Department of Shandong Province   (China)

^d SHANDONG UNIVERSITY   (China)

Author keywords

Elution; Enteroviral RNA; FTA elute card; Optimization

Indexed keywords

BUFFER; CELLULOSE; VIRUS RNA; WATER;

ANALYTICAL EQUIPMENT; ARTICLE; CONSENSUS DEGENERATE HYBRID OLIGONUCLEOTIDE PRIMER VP1 REVERSE TRANSCRIPTION SEMI NESTED POLYMERASE CHAIN REACTION; CONTROLLED STUDY; ELUTION; ENTEROVIRUS; INCUBATION TEMPERATURE; NONHUMAN; NUCLEIC ACID IMMOBILIZATION; NUCLEOTIDE SEQUENCE; PH; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROCESS OPTIMIZATION; QUALITATIVE RESEARCH; QUANTITATIVE ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA ANALYSIS; VIRUS LOAD; VIRUS STRAIN;

EID: 84869011481     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2012.08.016     Document Type: Article

References (27)

1. Abdelwhab E.M., Luschow D., Harder T.C., Hafez H.M. The use of FTA filter papers for diagnosis of avian influenza virus. Journal of Virological Methods 2011, 174:120-122.
2. Aye K.S., Matsuoka M., Kai M., Kyaw K., Win A.A., Shwe M.M., Thein M., Htoo M.M., Htoon M.T. FTA card utility for PCR detection of Mycobacterium leprae. Japanese Journal of Infectious Diseases 2011, 64:246-248.
3. Brown B., Oberste M.S., Maher K., Pallansch M.A. Complete genomic sequencing shows that polioviruses and members of human enteroviruses species C are closely related in the noncapsid coding region. Journal of Virology 2003, 77:8973-8984.
4. CDC Outbreaks following wild poliovirus importations-Europe, Africa, and Asia, January 2009-September 2010. Morbidity and Mortality Weekly Report 2010, 59:1393-1399.
5. CDC Tracking progress toward global polio eradication-worldwide, 2009-2010. Morbidity and Mortality Weekly Report 2011, 60:441-445.
6. Cortes A.L., Montiel E.R., Gimeno I.M. Validation of Marek's disease diagnosis and monitoring of Marek's disease vaccines from samples collected in FTA cards. Avian Diseases 2009, 54:510-516.
7. Edelbroek P.M., van der Heijden J., Stolk L.M.L. Dried blood spot methods in therapeutic drug monitoring: methods, assays and pitfalls. Therapeutic Drug Monitoring 2009, 31:327-336.
8. Gustavasson I., Lindell M., Wilander E., Strand A., Gyllensten U. Use of FTA card for dry collection, transportation and storage of cervical cell specimen to detect high-risk HPV. Journal of Clinical Virology 2009, 46:112-116.
9. Hyoty H., Taylor K.W. The role of viruses in human diabetes. Diabetologia 2002, 45:1353-1561.
10. Kearney M.T., Cotton J.M., Richardson P.J., Shah A.M. Viral myocarditis and dilated cardiomyopathy: mechanisms, manifestations, and management. Postgraduate Medical Journal 2001, 77:4-10.
11. Lema C., Kohl-White K., Lewis L.R., Dao D.D. Optimized pH method for DNA elution from buccal cells collected in Whatman FTA cards. Genetic Testing 2006, 10:126-130.
12. Li W., Tse F.L.S. Dried-blood spot sampling in combination with LC-MS/MS for quantitative analysis of small molecules. Biomedical Chromatography 2010, 24:49-65.
13. Lofgren S.M., Morrissey A.B., Chevallier C.C., et al. Evaluation of a dried blood spot HIV-1 RNA program for early infant and viral load monitoring at rural and remote healthcare facilities. AIDS 2009, 23:2459-2466.
14. Nix W., Allan, Obersete M.S., Pallansch M.A. Sensitive, seminested PCR amplification of VP1 sequences for direct identification of all enterovirus serotypes from original clinic specimens. Journal of Clinical Microbiology 2006, 44:2698-2704.
15. Nujhuis M., Maarseveen N., Schuurman R., Verkuijlen S., Vos M., Hendriksen K., Van Loon A.M. Rapid and Sensitive routine detection of all members of the genus Enterovirus in different clinical specimens by Real-Time PCR. Journal of Clinical Microbiology 2002, 40:3666-3670.
16. Oberste M.S., Maher K., Kilpatrick D.R., Pallansch M.A. Molecular evolution of the human enteroviruses: correlation of serotype with VP1 sequence and application to picornavirus classification. Journal of Virology 1999, 73:1941-1948.
17. OpenWetWare., 2009. Bioliographic details for TE. OpenWetWare. http://openwetware.org/index.php.
18. Pallansch M.A., Roos R.P. Enteroviruses: polioviruses, coxsachieviruses, echoviruses and newer enteroviruses. Fields Virology 2001, 723-775. 4th ed.
19. Pitt J.J. Newborn screening. The Clinical Biochemist Reviews 2010, 31:57-68.
20. Rogers C.D.G., Burgoyne L.A. Reverse transcription of an RNA genome from databasing paper (FTA). Biotechnology and Applied Biochemistry 2000, 31:219-224.
21. Stanway G., Brown F., Christian P., Hovi T., Hyypiä T., King A.M.Q., Knowles N.J., Lemon S.M., Minor P.D., Pallansch M.A., Palmenberg A.C., Skern T. Family Picornaviridae. Virus Taxonomy Eighth Report of the International Committee on Taxonomy of Viruses 2005, 757-778. Elsevier/Academic Press, London. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
22. Sultan D.M., Khalil M.M., Abdouh A.S., Doleh W.F., Al Muthanna A.A.M. Imported malaria in United Arab Emirates: evaluation of a new DNA extraction technique using nested PCR. The Korean Journal of Parasitology 2009, 47:223-227.
23. Suzuki S., Taketani H., Kusumoto K.I., Kashiwagi Y. High-throughput genotyping of filamentous fungus Aspergillus oryzae based on colony direct polymerase chain reaction. Journal of Bioscience and Bioengineering 2006, 102(6):572-574.
24. Whatman, 2007-2009. FTA Nucleic Acid Collection, Storage and Purification. http://www.whatman.com/FTANucleicAcidCollectionStorageandPurification.aspx.
25. Whatman, 2009. Preparation of Isolated DNA from FTA Cards. http://www.whatman.com/.
26. WHO 16th Informal Consultation of the Global Polio Laboratory Network 2010.
27. Zhang H., Li Y., Peng T., Aasa M., Zhang L., Yang Y., Archard L.C. Localization of enteroviral antigen in myocardium and other tissues from patients with heart muscle disease by an improved immunohistochemical technique. Journal of Histochemistry 2000, 48:579-584.