메뉴 건너뛰기




Volumn 7, Issue 11, 2012, Pages

Sensitive and Specific Peak Detection for SELDI-TOF Mass Spectrometry Using a Wavelet/Neural-Network Based Approach

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; CANCER DIAGNOSIS; CLINICAL ARTICLE; COMPUTER PREDICTION; CONTROLLED STUDY; DATA ANALYSIS; DATA ANALYSIS SOFTWARE; EARLY DIAGNOSIS; FEMALE; HUMAN; INTERMETHOD COMPARISON; NERVE CELL NETWORK; PAPILLOMAVIRUS INFECTION; PERFORMANCE MEASUREMENT SYSTEM; PROCESS DESIGN; PROCESS DEVELOPMENT; PROCESS OPTIMIZATION; PROCESS TECHNOLOGY; REPRODUCIBILITY; SENSITIVITY AND SPECIFICITY; SIGNAL DETECTION; SPECTRAL SENSITIVITY; SURFACE ENHANCED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; UTERINE CERVIX CANCER; UTERINE CERVIX MUCUS; WAVELET ANALYSIS;

EID: 84869010919     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0048103     Document Type: Article
Times cited : (5)

References (21)
  • 1
    • 65349138192 scopus 로고    scopus 로고
    • Benchmarking currently available SELDI-TOF MS preprocessing techniques
    • Emanuele VA, Gurbaxani BM, (2009) Benchmarking currently available SELDI-TOF MS preprocessing techniques. Proteomics 9: 1754-1762.
    • (2009) Proteomics , vol.9 , pp. 1754-1762
    • Emanuele, V.A.1    Gurbaxani, B.M.2
  • 2
    • 20244362660 scopus 로고    scopus 로고
    • Epidemiologic and viral factors associated with cervical neoplasia in HPV-16-positive women
    • Rajeevan MS, Swan DC, Nisenbaum R, Lee DR, Vernon SD, et al. (2005) Epidemiologic and viral factors associated with cervical neoplasia in HPV-16-positive women. Int J Cancer 115: 114-120.
    • (2005) Int J Cancer , vol.115 , pp. 114-120
    • Rajeevan, M.S.1    Swan, D.C.2    Nisenbaum, R.3    Lee, D.R.4    Vernon, S.D.5
  • 3
    • 34247856013 scopus 로고    scopus 로고
    • Effect of storage temperatures on the stability of cytokines in cervical mucous
    • Panicker G, Meadows KS, Lee DR, Nisenbaum R, Unger ER, (2007) Effect of storage temperatures on the stability of cytokines in cervical mucous. Cytokine 37: 176-179.
    • (2007) Cytokine , vol.37 , pp. 176-179
    • Panicker, G.1    Meadows, K.S.2    Lee, D.R.3    Nisenbaum, R.4    Unger, E.R.5
  • 4
    • 77951878032 scopus 로고    scopus 로고
    • Characterization of the Human Cervical Mucous Proteome
    • Panicker G, Ye Y, Wang D, Unger ER, (2010) Characterization of the Human Cervical Mucous Proteome. Clin Proteomics 6: 18-28.
    • (2010) Clin Proteomics , vol.6 , pp. 18-28
    • Panicker, G.1    Ye, Y.2    Wang, D.3    Unger, E.R.4
  • 5
    • 58249143572 scopus 로고    scopus 로고
    • Optimization of SELDI-TOF protein profiling for analysis of cervical mucous
    • Panicker G, Lee DR, Unger ER, (2009) Optimization of SELDI-TOF protein profiling for analysis of cervical mucous. J Proteomics 71: 637-646.
    • (2009) J Proteomics , vol.71 , pp. 637-646
    • Panicker, G.1    Lee, D.R.2    Unger, E.R.3
  • 6
    • 34547750458 scopus 로고    scopus 로고
    • Laboratory methods to improve SELDI peak detection and quantitation
    • Rollin D, Whistler T, Vernon SD, (2007) Laboratory methods to improve SELDI peak detection and quantitation. Proteome Sci 5: 9.
    • (2007) Proteome Sci , vol.5 , pp. 9
    • Rollin, D.1    Whistler, T.2    Vernon, S.D.3
  • 7
    • 0003500036 scopus 로고
    • Stanford, CA: Stanford University. Technical Report No. 475 Technical Report No. 475
    • Coifman RR, Donoho DL (1995) Translation-Invariant Denoising. Stanford, CA: Stanford University. Technical Report No. 475 Technical Report No. 475. 1-26 p.
    • (1995) Translation-Invariant Denoising , pp. 1-26
    • Coifman, R.R.1    Donoho, D.L.2
  • 8
    • 18744411077 scopus 로고    scopus 로고
    • Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform
    • Coombes KR, Tsavachidis S, Morris JS, Baggerly KA, Hung MC, et al. (2005) Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform. Proteomics 5: 4107-4117.
    • (2005) Proteomics , vol.5 , pp. 4107-4117
    • Coombes, K.R.1    Tsavachidis, S.2    Morris, J.S.3    Baggerly, K.A.4    Hung, M.C.5
  • 9
    • 77957740264 scopus 로고    scopus 로고
    • Quadratic variance models for adaptively preprocessing SELDI-TOF mass spectrometry data
    • Emanuele VA 2nd, Gurbaxani BM (2010) Quadratic variance models for adaptively preprocessing SELDI-TOF mass spectrometry data. BMC Bioinformatics 11: 512.
    • (2010) BMC Bioinformatics , vol.11 , pp. 512
    • Emanuele 2nd, V.A.1    Gurbaxani, B.M.2
  • 10
    • 3142756370 scopus 로고    scopus 로고
    • A Comparative Simulation Study of Wavelet Shrinkage Estimators for Poisson Counts
    • Besbeas P, De Feis I, Sapatinas T, (2004) A Comparative Simulation Study of Wavelet Shrinkage Estimators for Poisson Counts. Int Stat Rev 72: 209-237.
    • (2004) Int Stat Rev , vol.72 , pp. 209-237
    • Besbeas, P.1    de Feis, I.2    Sapatinas, T.3
  • 11
    • 52949099571 scopus 로고    scopus 로고
    • Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data
    • Cruz-Marcelo A, Guerra R, Vannucci M, Li Y, Lau CC, et al. (2008) Comparison of algorithms for pre-processing of SELDI-TOF mass spectrometry data. Bioinformatics 24: 2129-2136.
    • (2008) Bioinformatics , vol.24 , pp. 2129-2136
    • Cruz-Marcelo, A.1    Guerra, R.2    Vannucci, M.3    Li, Y.4    Lau, C.C.5
  • 14
    • 0003982971 scopus 로고    scopus 로고
    • Mikosch TV, editor. New York, NY: Springer Science+Business Media, LLC
    • Nocedal J, Wright SJ (2006) Numerical Optimization; Mikosch TV, editor. New York, NY: Springer Science+Business Media, LLC.
    • (2006) Numerical Optimization
    • Nocedal, J.1    Wright, S.J.2
  • 15
    • 0030128465 scopus 로고    scopus 로고
    • Determining the initial states in forward-backward filtering
    • Gustaffson F, (1996) Determining the initial states in forward-backward filtering. IEEE Trans Signal Process 44: 988-992.
    • (1996) IEEE Trans Signal Process , vol.44 , pp. 988-992
    • Gustaffson, F.1
  • 16
    • 85032764520 scopus 로고    scopus 로고
    • What Is a Savitzky-Golay Filter? [Lecture Notes]
    • Schafer RW, (2011) What Is a Savitzky-Golay Filter? [Lecture Notes]. IEEE Signal Process Mag 28: 111-117.
    • (2011) IEEE Signal Process Mag , vol.28 , pp. 111-117
    • Schafer, R.W.1
  • 17
    • 45549105194 scopus 로고    scopus 로고
    • Reproducibility of Mass Spectrometry Based Protein Profiles for Diagnosis of Breast Cancer across Clinical Studies: A Systematic Review
    • Callesen AK, Vach W, Jorgensen PE, Cold S, Morgensen O, et al. (2008) Reproducibility of Mass Spectrometry Based Protein Profiles for Diagnosis of Breast Cancer across Clinical Studies: A Systematic Review. J Proteome Res 7: 8.
    • (2008) J Proteome Res , vol.7 , pp. 8
    • Callesen, A.K.1    Vach, W.2    Jorgensen, P.E.3    Cold, S.4    Morgensen, O.5
  • 19
    • 63449101801 scopus 로고    scopus 로고
    • Validation of previously identified serum biomarkers for breast cancer with SELDI-TOF MS: a case control study
    • van Winden AW, Gast MC, Beijnen JH, Rutgers EJ, Grobbee DE, et al. (2009) Validation of previously identified serum biomarkers for breast cancer with SELDI-TOF MS: a case control study. BMC Med Genomics 2: 4.
    • (2009) BMC Med Genomics , vol.2 , pp. 4
    • van Winden, A.W.1    Gast, M.C.2    Beijnen, J.H.3    Rutgers, E.J.4    Grobbee, D.E.5
  • 20
    • 45549099293 scopus 로고    scopus 로고
    • Combined experimental and statistical strategy for mass spectrometry based serum protein profiling for diagnosis of breast cancer: A case-control study
    • Callesen AK, Vach W, Jorgensen PE, Cold S, Tan Q, et al. (2008) Combined experimental and statistical strategy for mass spectrometry based serum protein profiling for diagnosis of breast cancer: A case-control study. J Proteome Res 7: 8.
    • (2008) J Proteome Res , vol.7 , pp. 8
    • Callesen, A.K.1    Vach, W.2    Jorgensen, P.E.3    Cold, S.4    Tan, Q.5
  • 21
    • 28044471999 scopus 로고    scopus 로고
    • Independent validation of candidate breast cancer serum biomarkers identified by mass spectrometry
    • Li J, Orlandi R, White CN, Rosenzweig J, Zhao J, et al. (2005) Independent validation of candidate breast cancer serum biomarkers identified by mass spectrometry. Clin Chem 51: 2229-2235.
    • (2005) Clin Chem , vol.51 , pp. 2229-2235
    • Li, J.1    Orlandi, R.2    White, C.N.3    Rosenzweig, J.4    Zhao, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.