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Biomedical computing and visualization software environments
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The SCIRun computational steering software system
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Arge, E., Bruaset, A.M. and Langtangen, H.P. (eds). Birkhauser Press
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Parker, S.G., Weinstein, D.M., and Johnson, C.R (1997): The SCIRun Computational Steering Software System. In Modern Software Tools in Scientific Computing, 1-40. Arge, E., Bruaset, A.M. and Langtangen, H.P. (eds). Birkhauser Press.
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Visualization in the SCIRun problem-solving environment
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Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Weinstein, D.M., Parker, D.M., Simpson, J., Zimmerman, K., and Jones, G. (2005): Visualization in the SCIRun Problem-Solving Environment. In The Visualization Handbook, 615-632. Hansen, C.D. and Johnson, C.R. (eds). Elsevier.
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Engineering and algorithm design for an image processing API: A technical report on ITK - The insight toolkit
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Westwood, J. (ed). IOS Press Amsterdam
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Yoo, T.S., Ackerman, M.J., Lorensen, W.E, Schroeder, W., Chalana, V. Aylward, S., Metaxes, D., and Whitaker, R. (2002): Engineering and Algorithm Design for an Image Processing API: A Technical Report on ITK - The Insight Toolkit. In Proc. of Medicine Meets Virtual Reality, (586-592). Westwood, J. (ed). IOS Press Amsterdam.
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Interactive, GPU-based level sets for 3D segmentation
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Lefohn, A.E., Cates, J.E., and Whitaker, R.T (2003): Interactive, GPU-Based Level Sets for 3D Segmentation. In Medical Image Computing and Computer Assisted Intervention (MICCAI), 564-572.
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Lefohn, A.E.1
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Scanline surfacing: Building separating surfaces from planar contours
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Weinstein, D.M. (2000): Scanline Surfacing: Building Separating Surfaces from Planar Contours. In Proceeding of IEEE Visualization 2000, 283-289.
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Sandia National Laboratories (2004): CAMAL - The CUBIT Adaptive Meshing Algorithm Library - http://cubit.sandia.gov/camal.html - Release 2.0.2.
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8
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Computational and numerical methods for bioelectric field problems
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Johnson, C.R. (1997): Computational and Numerical Methods for Bioelectric Field Problems. In Critical Reviews in BioMedical Engineering, 25(1):1-81. (Pubitemid 27282280)
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Lead-field bases for electroencephalography source imaging
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DOI 10.1114/1.1310220
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Weinstein, D.M., Zhukov, L. and Johnson, C.R. (2000): Lead-Field Bases for EEG Source Imaging. Annals of Biomedical Engineering, 28(9):1059-1065. (Pubitemid 32085793)
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Annals of Biomedical Engineering
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Influence of local and remote white matter conductivity anisotropy for a thalamic source on EEG/MEG field and return current computation
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In Press
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Wolters, C.H., Anwander, A., Tricoche, X, Lew, S., and Johnson, C.R. (2005): Influence of Local and Remote White Matter Conductivity Anisotropy for a Thalamic Source on EEG/MEG Field and Return Current Computation. In International Journal of Bioelectromagnetism (In Press).
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International Journal of Bioelectromagnetism
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Wolters, C.H.1
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12
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Multidimentional transfer functions for volume rendering
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Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Kniss, J.M., Kindlmann, G., Hansen, C.H. (2005): Multidimentional Transfer Functions for Volume Rendering. In The Visualization Handbook, (189-210). Hansen, C.D. and Johnson, C.R. (eds). Elsevier.
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Kniss, J.M.1
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Accelerated isosurface extraction approaches
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Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Livnat, Y. (2005): Accelerated Isosurface Extraction Approaches. In The Visualization Handbook, (39-55). Hansen, C.D. and Johnson, C.R. (eds). Elsevier.
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Topological methods for flow visualization
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Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Scheuermann, G. and Tricoche, X (2005): Topological Methods for Flow Visualization. In The Visualization Handbook, (341-356). Hansen, C.D. and Johnson, C.R. (eds). Elsevier.
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Isosurfaces and level-sets
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Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Whitaker, R.T. (2005): Isosurfaces and Level-Sets. In The Visualization Handbook, (97-123). Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Diffusion tensor MRI visualization
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Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Zhang, S., Laidlaw, D.H., and Kindlmann, G. (2005): Diffusion Tensor MRI Visualization. In The Visualization Handbook, (327-340). Hansen, C.D. and Johnson, C.R. (eds). Elsevier
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Enabling technologies for computational science: Frameworks, middleware, and environments
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Houstis, E., Rice, J., Gallopoulos, E, and Bramley, R. (eds). Kluwer Academic
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Bramley, R., Char B., Gannon, D., Hewett, T., Johnson, C.R., and Rice, J. (2000): Enabling Technologies for Computational Science: Frameworks, Middleware, and Environments. In Workshop on Scientific Knowledge, Information, and Computing, (19-32). Houstis, E., Rice, J., Gallopoulos, E, and Bramley, R. (eds). Kluwer Academic.
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19
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SCIRun2: A CCA framework for high performance computing
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Zhang, K., Damevski, K., Venkatachalapathy, V., Parker, S. (2004): SCIRun2: A CCA Framework for High Performance Computing, In Proceedings of The 9th International Workshop on High-Level Parallel Programming Models and Supportive Environments.
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