Comprehensive lipidome profiling of isogenic primary and metastatic colon adenocarcinoma cell lines

Analytical Chemistry

Volumn 84, Issue 21, 2012, Pages 8917-8926

  Fhaner, Cassie J ^a   Liu, Sichang ^a   Ji, Hong ^b   Simpson, Richard J ^b   Reid, Gavin E ^a,c  

^a MICHIGAN STATE UNIVERSITY   (United States)

^b LA TROBE UNIVERSITY   (Australia)

^c Michigan State University   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOCARCINOMA CELLS; CANCER PROGRESSION; CELL LINES; CERAMIDES; CHEMICAL DERIVATIZATION; CHOLESTEROL ESTERS; COLORECTAL CANCER; CRUDE EXTRACT; FIXED CHARGES; GLYCEROPHOSPHOLIPIDS; HIGH RESOLUTION; LIPID LEVELS; LIPID SPECIES; LIPIDOMES; LIPIDOMICS; LYMPH NODE; MILD ACID HYDROLYSIS; MODIFICATION REACTIONS; PATHOLOGICAL PROCESS; PRECURSOR IONS; RELATIVE ABUNDANCE; SPHINGOLIPIDS; SPHINGOMYELIN; STATISTICALLY SIGNIFICANT DIFFERENCE; TANDEM MASS SPECTROMETRY;

AMIDES; CHEMICAL ANALYSIS; CHEMICAL MODIFICATION; DISEASES; ESTERIFICATION; ESTERS; ETHERS; FORMIC ACID; MASS SPECTROMETRY; PHOSPHOLIPIDS;

CELL CULTURE;

LIPID; SUCCINIMIDE; SUCCINIMIDE DERIVATIVE;

ADENOCARCINOMA; CHEMISTRY; COLON TUMOR; HUMAN; LIPID METABOLISM; MASS SPECTROMETRY; METASTASIS; PATHOLOGY; TUMOR CELL LINE;

ADENOCARCINOMA; CELL LINE, TUMOR; COLONIC NEOPLASMS; HUMANS; LIPID METABOLISM; LIPIDS; MASS SPECTROMETRY; NEOPLASM METASTASIS; SUCCINIMIDES;

EID: 84868570014     PISSN: 00032700     EISSN: 15206882     Source Type: Journal    
DOI: 10.1021/ac302154g     Document Type: Article

References (48)

1. Green, D. E.; Tzagoloff, A. J. Lipid Res. 1966, 7, 587-602
2. van Meer, G.; Voelker, D. R.; Feigenson, G. W. Nat. Rev. Mol. Cell Biol. 2008, 9, 112-124
3. Smith, R. E.; Lespi, P.; Di Luca, M.; Busos, C.; Marra, F. A.; de Alaniz, M. J. T.; Marra, C. A. Lipids 2008, 43, 79-89
4. Min, H. K.; Lim, S.; Chung, B. C.; Moon, M. H. Anal. Bioanal. Chem. 2011, 399, 823-830
5. Dória, M. L.; Cotrim, Z.; Macedo, B.; Simões, C.; Domingues, P.; Helguero, L.; Domingues, M. R. Breast Cancer Res. Treat. 2012, 133, 635-648
6. Katz-Brull, R.; Seger, D.; Rivenson-Segal, D.; Rushkin, E.; Degani, H. Cancer Res. 2002, 62, 1966-1970
7. Slagel, D. E.; Dittmer, J. C.; Wilson, C. B. J. Neurochem. 1967, 14, 789-798
8. Griffitts, J.; Saunders, D.; Tesiram, Y. A.; Reid, G. E.; Salih, A.; Liu, S.; Lydic, T. A.; Busik, J. V. Biochim. Biophys. Acta 2010, 1801, 1133-1144
9. White-Gilbertson, S.; Mullen, T.; Senkal, C.; Lu, P.; Ogretmen, B.; Obeid, L.; Voelkel-Johnson, C. Oncogene 2009, 28, 1132-1141
10. Schonberg, S. A.; Lundemo, A. G.; Fladvad, T.; Holmgren, K.; Bremseth, H.; Nilsen, A.; Gederaas, O.; Tvedt, K. E.; Egeberg, K. W.; Krokan, H. E. FEBS J. 2006, 273, 2749-2765
11. Merchant, T. E.; Kasimos, J,N.; de Graaf, P. W.; Minsky, B. D.; Gierke, L. W.; Glonek, T. Int. J. Colorectal Dis. 1991, 6, 121-126
12. Dueck, D.; Chan, M.; Tran, K.; Wong, J. T.; Jay, F. T.; Littman, C.; Stimpson, R.; Choy, P. C. Mol. Cell. Biochem. 1996, 162, 97-103
13. Siegel, R.; Jemal, A. Colorectal Cancer Facts & Figures 2011-2013; American Cancer Society: Atlanta, GA, 2011.
14. Han, X.; Yang, K.; Gross, R. W. Mass Spectrom. Rev. 2012, 31, 134-178
15. Yang, K.; Cheng, H.; Gross, R. W.; Han, X. Anal. Chem. 2009, 81, 4356-4368
16. Busik, J. V.; Reid, G. E.; Lydic, T. A. Methods Mol. Biol. 2009, 579, 33-70
17. Ståhlman, M.; Ejsing, C. S.; Tarasov, K.; Perman, J.; Borén, J.; Ekroos, K. J. Chromatogr., B: Anal. Technol. Biomed. Life Sci. 2009, 877, 2664-2672
18. Houjou, T.; Yamatani, K.; Imagawa, M.; Shimizu, T.; Taguchi, R. Rapid Commun. Mass Spectrom. 2005, 19, 654-666
19. Han, X.; Gross, R. W. Mass Spectrom. Rev. 2005, 24, 367-412
20. Ejsing, C. S.; Sampaio, J. L.; Surendranath, V.; Duchoslav, E.; Ekroos, K.; Klemm, R. W.; Simons, K.; Shevchenko, A. Proc. Natl. Acad. Sci.U.S.A. 2009, 106, 2136-2141
21. Hsu, F.; Turk, J. J. Am. Soc. Mass Spectrom. 2007, 18, 2065-2073
22. Folch, J.; Lees, M.; Sloane Stanley, G. H. J. Biol. Chem. 1956, 226, 497-509
23. Lydic, T. A.; Busik, J. V.; Esselman, W. J.; Reid, G. E. Anal. Bioanal. Chem. 2009, 394, 267-275
24. Zhou, X.; Lu, Y.; Wang, W.; Borhan, B.; Reid, G. E. J. Am. Soc. Mass Spectrom. 2010, 21, 1339-1351
25. Ekroos, K. In Lipidomics; Wiley-VCH, Weinheim, Germany, 2012; Chapter 1.
26. Haimi, P.; Uphoff, A.; Hermansson, M.; Somerharju, P. Anal. Chem. 2006, 78, 8324-8331
27. Sandhoff, R.; Brügger, B.; Jeckel, D.; Lehmann, W. D.; Wieland, F. T. J. Lipid Res. 1999, 40, 126-132
28. Li, Y. L.; Su, X.; Stahl, P. D.; Gross, M. L. Anal. Chem. 2007, 79, 1569-1574
29. Yang, W.; Adamec, J.; Regnier, F. E. Anal. Chem. 2007, 79, 5150-5157
30. Zemski Berry, K. A.; Murphy, R. C. Anal. Biochem. 2006, 349, 118-128
31. Zemski Berry, K. A.; Turner, W. W.; VanNieuwenhze, M. S.; Murphy, R. C. Eur. J. Mass Spectrom. 2010, 16, 463-470
32. Han, X.; Yang, K.; Cheng, H.; Fikes, K. N.; Gross, R. W. J. Lipid Res. 2005, 46, 1548-1560
33. Horning, M. G.; Martin, D. B.; Karmen, A.; Vagelos, P. R. J. Biol. Chem. 1961, 236, 669-672
34. Ivanova, P. T.; Milne, S. B.; Brown, H. A. J. Lipid Res. 2010, 51, 1581-1590
35. Murphy, E. J.; Stephens, R.; Jurkowitz-Alexander, M.; Horrocks, L. A. Lipids 1993, 28, 565-568
36. Lu, Y.; Zhou, X.; Stemmer, P. M.; Reid, G. E. J. Am. Soc. Mass Spectrom. 2012, 23, 577-593
37. Snyder, F.; Wood., R. Cancer Res. 1969, 29, 251-257
38. Howard, B. V.; Morris, H. P.; Bailey, J. M. Cancer Res. 1972, 32, 1533-1538
39. Braverman, N. E.; Moser, A. B. Biochim. Biophys. Acta 2012, 1822, 1442-1452
40. Menendez, J. A.; Lupu, R. Nat. Rev. Cancer 2007, 7, 763-777
41. Snyder, F.; Blank, M. L.; Morris, H. P. Biochim. Biophys. Acta 1969, 176, 502-510
42. Friedberg, S. J.; Smajdek, J.; Anderson, K. Cancer Res. 1986, 46, 845-849
43. Lin, H. J.; Wu, P. C.; Ho, J. C. I. Br. J. Cancer 1980, 41, 320-324
44. Hsu, F.; Turk, J. J. Chromatogr., B 2009, 877, 2673-2695
45. McAnoy, A. M.; Wu, C. C.; Murphy, R. C. J. Am. Soc. Mass Spectrom. 2005, 16, 1498-1509
46. Valsecchi, M.; Mauri, L.; Casellato, R.; Prioni, S.; Loberto, N.; Prinetti, A.; Chigorno, V.; Sonnino, S. J. Lipid Res. 2007, 48, 417-424
47. Quehenberger, O.; Armando, A. M.; Brown, A. H.; Milne, S. B.; Meyers, D. S.; Merrill, A. H.; Bandyopadhyay, S.; Jones, K. N.; Kelly, S.; Shaner, R. L.; Sullards, C. M.; Wang, E.; Murphy, R. C.; Barkley, R. M.; Leiker, T. J.; Raetz, C. R. H.; Guan, Z.; Laird, G. M.; Six, D. A.; Russell, D. W.; McDonald, J. G.; Subramaniam, S.; Fahy, E.; Dennis, E. A. J. Lipid Res. 2010, 51, 3299-3305
48. Dennis, E. A.; Deems, R. A.; Harkewicz, R.; Quehenberger, O.; Brown, H. A.; Milne, S. B.; Myers, D. S.; Glass, C. K.; Hardiman, G.; Reichart, D.; Merrill, A. H., Jr.; Sullards, M. C.; Wang, E.; Murphy, R. C.; Raetz, C. R. H.; Garrett, T. A.; Guan, Z.; Ryan, A. C.; Russell, D. W.; McDonald, J. G.; Thompson, B. M.; Shaw, W. A.; Sud, M.; Zhao, Y.; Gupta, S.; Maurya, M. R.; Fahy, E.; Subramaniam, S. J. Biol. Chem. 2010, 285, 39976-39985