Multi-environment mapping and meta-analysis of 100-seed weight in soybean

Molecular Biology Reports

Volumn 39, Issue 10, 2012, Pages 9435-9443

  Sun, Ya Nan ^a,b   Pan, Jun Bo ^a,b,c   Shi, Xiang Lin ^a,b   Du, Xiang Yu ^a,b   Wu, Qiong ^a,b   Qi, Zhao Ming ^b   Jiang, Hong Wei ^a   Xin, Da Wei ^b   Liu, Chun Yan ^a   Hu, Guo Hua ^a,d   Chen, Qing Shan ^b  

^a Crop Research and Breeding Center of Land Reclamation of Heilongjiang Province   (China)

^b NORTHEAST AGRICULTURAL UNIVERSITY   (China)

^c NORTHEAST FORESTRY UNIVERSITY   (China)

^d National Research Center of Soybean Engineering and Technology   (China)

Author keywords

100 Seed weight (100 SW); Environment; QTL mapping; Soybean Glycine max (L.) Merr.

Indexed keywords

ARTICLE; CONFIDENCE INTERVAL; CONTROLLED STUDY; CROSS BREEDING; GENOTYPE ENVIRONMENT INTERACTION; INBRED STRAIN; NONHUMAN; PHENOTYPE; PLANT GENETICS; QUANTITATIVE TRAIT LOCUS MAPPING; SEED WEIGHT; SOYBEAN;

ANALYSIS OF VARIANCE; CHROMOSOME MAPPING; GENES, PLANT; GENETIC MARKERS; LOD SCORE; PHENOTYPE; QUANTITATIVE TRAIT LOCI; SEEDS; SOYBEANS;

GLYCINE MAX;

EID: 84868531306     PISSN: 03014851     EISSN: 15734978     Source Type: Journal    
DOI: 10.1007/s11033-012-1808-4     Document Type: Article

References (43)

1. Burris JS, Edje OT, Wahab AH (1973) Effect of seed size on seedling performance in soybeans. II. Seedling growth and photosynthesis and field performance. Crop Sci 13:207-210
2. Smith TJ, Camper HM Jr (1975) Effect of seed size on soybean performance. Agron J 67:681-684
3. Maughan PJ, Saghai Maroof MA, Buss GR (1996) Molecularmarker analysis of seed-weight: genomic locations, gene action, and evidence for orthologous evolution among three legume species. Theor Appl Genet 93:574-579
4. Mian MAR, Bailey MA, Tamulonis JP, Shipe ER, Carter TE Jr, Parrott WA, Ashley DA, Hussey RS, Boerma HR (1996) Molecular markers associated with seed weight in two soybean populations. Theor Appl Genet 93:1011-1016
5. Hirshfield KM, Flannery RL, Dale J (1992) Cotyledon cell number and cell size in relation to seed size and seed yield of soybean. Plant Physiol 31:395-400
6. Wang LZ, Wang JL (1992) Soybean genetics and breeding. Science Press, Beijing
7. Mansur LM, Orf J, Lark KG (1993) Determining the linkage of quantitative trait loci to RFLP markers using extreme phenotypes of recombinant inbreds of soybean. Theor Appl Genet 86:914-918
8. Orf JH, Chase K, Jarvik T, Mansur LM, Cregan PB, Adler FR, Lark KG (1999) Genetics of soybean agronomic traits: I. Comparison of three related recombinant inbred populations. Crop Sci 39:1642-1651
9. Wan YS (2002) Construction of soybean genetic map and QTL analysis of some agronomic traits. Dissertation, Biotechnology Research Institute, The Chinese Academy of Agricultural Sciences
10. Wu XL, Wang YJ, He CY, Chen SY, Gai JY, Wang XC (2001) QTL analysis of major agronomic traits in soybean. Acta Genet Sin 28(10):947-955
11. Zhang WK, Wang YJ, Luo GZ, Zhang JS, He CY, Wu XL, Gai JY, Chen SY (2004) QTL mapping of ten agronomic traits on the soybean (Glycine max L. Merr.) genetic map and their association with EST markers. Theor Appl Genet 108:1131-1139
12. Mansur LM, Orf JH, Chase K, Jarvik T, Cregan PB, Lark KG (1996) Genetic mapping of agronomic traits using recombinant inbred lines of soybean. Crop Sci 36:1327-1336
13. Concibido VC, La Vallee B, Mclaird P, Pineda N, Meyer J, Hummel L, Yang J, Wu K, Delannay X (2003) Introgression of a quantitative trait locus for yield from Glycine soja into commercial soybean cultivars. Theor Appl Genet 106(4):575-582
14. Reinprecht Y, Poysa VW, Yu K, Rajcan I, Ablett GR, Pauls KP (2006) Seed and agronomic QTL in low linolenic acid, lipoxygenase-free soybean (Glycine max L. Merr.) germplasm. Genome 49:1510-1527
15. Teng W, Han Y, Du Y, Sun D, Zhang Z, Qiu L, Sun G, Li W (2009) QTL analyses of seed weight during the development of soybean (Glycine max L. Merr.). Heredity 102:372-380
16. Rudner LM, Glass GV, Evartt DL, Emery PJ (2002) A user's guide to the meta-analysis of research studies. ERIC Clearinghouse on Assessment and Evaluation, University of Maryland, College Park
17. Etzel CJ, Guerra R (2002) Meta-analysis of genetic linkage analysis of quantitative trait loci. Am J Hum Genet 71:56-65
18. Chardon F, Virlon B, Moreau L, Falque M, Joets J, Decousset L, Murigneux A, Charcosset A (2004) Genetic architecture of flowering time in maize as inferred from quantitative trait loci meta-analysis and synteny conservation with the rice genome. Genetics 168:2169-2185
19. Qi ZM, Sun YN, Chen LJ, Guo Q, Liu CY, Hu GH, Chen QS (2009) Meta-analysis of 100-seed weight QTLs in soybean. Sci Agric Sin 42(11):3795-3803
20. Wang S, Basten CJ, Zeng ZB (2011) Windows QTL Cartographer 2.5. Department of Statistics, North Carolina State University, Raleigh, NC. http://statgen. ncsu.edu/qtlcart/WQTLCart.htm
21. Chen QS, Zhang ZC, Liu CY, Wang WQ, Li WB (2005) Construction and analysis of soybean genetic map using recombinant inbred line of Charleston 9 Dongnong 594. Sci Agric Sin 38(7):1312-1316
22. Zeng ZB (1994) Precision mapping of quantitative trait loci. Genetics 136:1457-1468
23. Kao CH, Zeng ZB, Teasdale RD (1999) Multiple interval mapping for quantitative trait loci. Genetics 152:1203-1206
24. Su CF, Lu WG, Zhao TJ, Gai JY (2010) Verification and finemapping of QTLs conferring days to flowering in soybean using residual heterozygous lines. Chinese Sci Bull 55(6):499-508
25. Darvasi A, Weinreb A, Minke V, Weller JI, Soller M (1993) Detecting marker-QTL linkage and estimating QTL gene effect and map location using a saturated genetic map. Genetics 134:943-951
26. Darvasi A, Soller M (1997) A simple method to calculate resolving power and confidence interval of QTL map location. Behav Genet 27(2):125-132
27. Song QJ, Marek LF, Shoemaker RC, Lark KG, Concibido VC, Delannay X, Specht JE, Cregan PB (2004) A new integrated genetic linkage map of the soybean. Theor Appl Genet 109:122-128
28. Goffinet B, Gerber S (2000) Quantitative trait loci: a meta-analysis. Genetics 155:463-473
29. Gai JY, Wang YJ, Wu XL, Chen SY (2007) A comparative study on segregation analysis and QTL mapping of quantitative traits in plants with a case in soybean. Front Agric China 1(1):1-7
30. Guan RX (2004) QTL mapping of soybean agronomic characters and genetic diversity analysis of soybean cultivars from China and Japan. Dissertation, Chinese Academy of Agricultural Sciences
31. Li DD, Pfeiffer TW, Cornelius PL (2008) Soybean QTL for yield and yield components associated with Glycine soja alleles. Crop Sci 48:571-581
32. Chen QS, Zhang ZC, Liu CY, Xin DW, Shan DP, Qiu HM, Shan CY (2007) QTL analysis of major agronomic traits in soybean. Agric Sci China 6(4):399-405
33. Wang Z (2004) Construction of soybean SSR based map and QTL analysis important agronomic traits. Dissertation, Guangxi University
34. Wang XZ (2008) Inheritance, stability analysis and QTL mapping of yield related traits in soybean. Dissertation, Chinese Academy of Agricultural Sciences
35. Zhu XL (2006) Constructing of genetic linkage map and QTL mapping of important agronomic traits in two soybean populations. Dissertation, Northeast Agricultural University
36. Huang ZW, Zhao TJ, Yu DY, Chen SY, Gai JY (2009) Detection of QTLs of yield related traits in soybean. Sci Agric Sin 42(12):4155-4165
37. Wang X, Xu Y, Li GJ, Li HN, Gen WQ, Zhang YM (2010) Mapping quantitative trait loci for 100-seed weight in soybean (Glycine max L. Merr.). Acta Agron Sin 36(10):1674-1682
38. Jansen RC, Van Ooijien JM, Stam P, Lister C, Dean C (1995) Genotype-by-environment interaction in genetic mapping of multiple quantitative trait loci. Theor Appl Genet 91:33-37
39. Guo B, Sleper DA, Lu P, Shannon JG, Nguyen HT, Arelli PR (2006) QTLs associated with resistance to soybean cyst nematode in soybean: meta-analysis of QTL location. Crop Sci 46:595-602
40. Csanádi G, Vollmann J, Stift G, Lelley T (2001) Seed quality QTLs identified in a molecular map of early maturing soybean. Theor Appl Genet 103:912-919
41. Specht JE, Chase K, Macrander M, Graef GL, Chung J, Markwell JP, Germann M, Orf JH, Lark KG (2001) Soybean response to water: a QTL analysis of drought tolerance. Crop Sci 41:493-509
42. Keightley PD, Morris KH, Ishikawa A, Falconer VM, Oliver F (1998) Test of candidate gene-quantitative trait locus association applied to fatness in mice. Heredity 81:630-637
43. Zhang P, Wang Y, Zhang J, Maddock S, Snook M, Peterson T (2003) A maize QTL for silk maysin levels contains duplicated Myb-homologous genes which jointly regulate flavone biosynthesis. Plant Mol Biol 52(1):1-15