메뉴 건너뛰기




Volumn 33, Issue 1, 2013, Pages 85-89

Indigenous and spoilage microbiota of farmed sea bream stored in ice identified by phenotypic and 16S rRNA gene analysis

Author keywords

16S rRNA; Fish; Microbiota; Sea bream; Spoilage

Indexed keywords

BACTERIAL DNA; RNA 16S;

EID: 84868504590     PISSN: 07400020     EISSN: 10959998     Source Type: Journal    
DOI: 10.1016/j.fm.2012.09.001     Document Type: Article
Times cited : (95)

References (38)
  • 1
    • 29144504177 scopus 로고    scopus 로고
    • At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies
    • Ashelford K.E., Chuzhanova N.A., Fry J.C., Jones A.J., Weightman A.J. At least 1 in 20 16S rRNA sequence records currently held in public repositories is estimated to contain substantial anomalies. Applied and Environmental Microbiology 2005, 71:7724-7736.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 7724-7736
    • Ashelford, K.E.1    Chuzhanova, N.A.2    Fry, J.C.3    Jones, A.J.4    Weightman, A.J.5
  • 2
    • 49449086212 scopus 로고    scopus 로고
    • Polymerase chain reaction amplification of repetitive intergenic consensus and repetitive extragenic palindromic sequences for molecular typing of Pseudomonas anguilliseptica and Aeromonas salmonicida
    • Beaz-Hidalgo R., López-Romalde S., Toranzo A.E., Romalde J.L. Polymerase chain reaction amplification of repetitive intergenic consensus and repetitive extragenic palindromic sequences for molecular typing of Pseudomonas anguilliseptica and Aeromonas salmonicida. Journal of Aquatic Animal Health 2008, 20:75-85.
    • (2008) Journal of Aquatic Animal Health , vol.20 , pp. 75-85
    • Beaz-Hidalgo, R.1    López-Romalde, S.2    Toranzo, A.E.3    Romalde, J.L.4
  • 3
    • 79957929894 scopus 로고    scopus 로고
    • Seafood quality analysis: molecular identification of dominant microbiota after ice storage on several general growth media
    • Broekaert K., Heyndrickx M., Herman L., Devlieghere F., Vlaemynck G. Seafood quality analysis: molecular identification of dominant microbiota after ice storage on several general growth media. Food Microbiology 2011, 28:1162-1169.
    • (2011) Food Microbiology , vol.28 , pp. 1162-1169
    • Broekaert, K.1    Heyndrickx, M.2    Herman, L.3    Devlieghere, F.4    Vlaemynck, G.5
  • 4
    • 33749673755 scopus 로고    scopus 로고
    • Quality differences of whole ungutted sea bream (Sparus aurata) and sea bass (Dicentrarchus labrax) while stored in ice
    • Cakli S., Kilinc B., Cadun A., Dincer T., Tolasa S. Quality differences of whole ungutted sea bream (Sparus aurata) and sea bass (Dicentrarchus labrax) while stored in ice. Food Control 2007, 18:391-397.
    • (2007) Food Control , vol.18 , pp. 391-397
    • Cakli, S.1    Kilinc, B.2    Cadun, A.3    Dincer, T.4    Tolasa, S.5
  • 6
    • 0036624673 scopus 로고    scopus 로고
    • Fish spoilage bacteria: problems and solutions
    • Gram L., Dalgaard P. Fish spoilage bacteria: problems and solutions. Current Opinion in Microbiology 2002, 13:262-266.
    • (2002) Current Opinion in Microbiology , vol.13 , pp. 262-266
    • Gram, L.1    Dalgaard, P.2
  • 7
    • 0023088501 scopus 로고
    • Detection of specific spoilage bacteria from fish stored at low (0 °C) and high (20 °C) temperatures
    • Gram L., Trolle G., Huss H.H. Detection of specific spoilage bacteria from fish stored at low (0 °C) and high (20 °C) temperatures. International Journal of Food Microbiology 1987, 4:65-72.
    • (1987) International Journal of Food Microbiology , vol.4 , pp. 65-72
    • Gram, L.1    Trolle, G.2    Huss, H.H.3
  • 9
    • 34248207624 scopus 로고    scopus 로고
    • Characterisation of the bacterial flora of modified atmosphere packaged farmed Atlantic cod (Gadus morhua) by PCR-DGGE of conserved 16S rRNA gene regions
    • Hovda M.B., Lunestad B.T., Sivertsvik M., Rosnes J.T. Characterisation of the bacterial flora of modified atmosphere packaged farmed Atlantic cod (Gadus morhua) by PCR-DGGE of conserved 16S rRNA gene regions. International Journal of Food Microbiology 2007, 117:68-75.
    • (2007) International Journal of Food Microbiology , vol.117 , pp. 68-75
    • Hovda, M.B.1    Lunestad, B.T.2    Sivertsvik, M.3    Rosnes, J.T.4
  • 10
    • 33845676336 scopus 로고    scopus 로고
    • Characterisation of the dominant bacterial population in modified atmosphere. packaged farmed halibut (Hippoglossus hippoglossus) based on 16S rDNA-DGGE
    • Hovda M.B., Sivertsvik M., Lunestad B.T., Lorentzen G., Rosnes J.T. Characterisation of the dominant bacterial population in modified atmosphere. packaged farmed halibut (Hippoglossus hippoglossus) based on 16S rDNA-DGGE. Food Microbiology 2007, 24:362-371.
    • (2007) Food Microbiology , vol.24 , pp. 362-371
    • Hovda, M.B.1    Sivertsvik, M.2    Lunestad, B.T.3    Lorentzen, G.4    Rosnes, J.T.5
  • 12
    • 24644514351 scopus 로고    scopus 로고
    • Microbiological changes and its correlation with quality indices during aerobic iced storage of sea salmon (Pseudopercis semifasciata)
    • Hozbor M.C., Saiz A.I., Yeannes M.I., Fritz R. Microbiological changes and its correlation with quality indices during aerobic iced storage of sea salmon (Pseudopercis semifasciata). LWT - Food Science and Technology 2006, 39:99-104.
    • (2006) LWT - Food Science and Technology , vol.39 , pp. 99-104
    • Hozbor, M.C.1    Saiz, A.I.2    Yeannes, M.I.3    Fritz, R.4
  • 13
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P., Goebel B.M., Pace N.R. Impact of culture independent studies on the emerging phylogenetic view of bacterial diversity. Journal of Bacteriology 1998, 180:4765-4774.
    • (1998) Journal of Bacteriology , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 14
    • 77049130214 scopus 로고
    • The taxonomic significance of fermentative versus oxidative Gram-negative bacteria
    • Hugh R., Leifson E. The taxonomic significance of fermentative versus oxidative Gram-negative bacteria. Journal of Bacteriology 1953, 66:24-26.
    • (1953) Journal of Bacteriology , vol.66 , pp. 24-26
    • Hugh, R.1    Leifson, E.2
  • 17
    • 0034715170 scopus 로고    scopus 로고
    • Application of a systematic experimental procedure to develop a microbial model for rapid fish shelf-life predictions
    • Koutsoumanis K., Nychas G.-J.E. Application of a systematic experimental procedure to develop a microbial model for rapid fish shelf-life predictions. International Journal of Food Microbiology 2000, 60:171-184.
    • (2000) International Journal of Food Microbiology , vol.60 , pp. 171-184
    • Koutsoumanis, K.1    Nychas, G.-J.E.2
  • 18
    • 0033120563 scopus 로고    scopus 로고
    • Biogenic amines and sensory changes associated with the microbial flora of Mediterranean gilt-head sea bream stored aerobically at 0, 8 and 15 °C
    • Koutsoumanis K., Lampropoulou K., Nychas G.-J.E. Biogenic amines and sensory changes associated with the microbial flora of Mediterranean gilt-head sea bream stored aerobically at 0, 8 and 15 °C. Journal of Food Protection 1999, 62:398-402.
    • (1999) Journal of Food Protection , vol.62 , pp. 398-402
    • Koutsoumanis, K.1    Lampropoulou, K.2    Nychas, G.-J.E.3
  • 19
    • 0036104706 scopus 로고    scopus 로고
    • Sensory, chemical and microbiological assessment of farm-raised European sea bass (Dicentrarchus labrax) stored in melting ice
    • Kyrana V.R., Lougovois V.P. Sensory, chemical and microbiological assessment of farm-raised European sea bass (Dicentrarchus labrax) stored in melting ice. International Journal of Food Science and Technology 2002, 37:319-328.
    • (2002) International Journal of Food Science and Technology , vol.37 , pp. 319-328
    • Kyrana, V.R.1    Lougovois, V.P.2
  • 21
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • John Wiley & Sons, Chichester, E. Stackenbrandt, M. Goodfellow (Eds.)
    • Lane D.J. 16S/23S rRNA sequencing. Nucleic Acid Techniques in Bacterial Systematics 1991, 115-175. John Wiley & Sons, Chichester. E. Stackenbrandt, M. Goodfellow (Eds.).
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 22
    • 0012357228 scopus 로고    scopus 로고
    • Spoilage of fish
    • Academic Press, San Diego, R.K. Robinson, C.A. Batt, P.D. Patel (Eds.)
    • Leisner J.J., Gram L. Spoilage of fish. Encyclopedia of Food Microbiology 1999, 813-820. Academic Press, San Diego. R.K. Robinson, C.A. Batt, P.D. Patel (Eds.).
    • (1999) Encyclopedia of Food Microbiology , pp. 813-820
    • Leisner, J.J.1    Gram, L.2
  • 23
    • 84856039293 scopus 로고    scopus 로고
    • Characterisation of the spoilage microbiota in raw salmon (Salmo salar) steaks stored under vacuum or modified atmosphere packaging combining conventional methods and PCR-TTGE
    • Macé S., Cornet J., Chevalier F., Cardinal M., Pilet M.-F., Dousset X., Joffraud J.-J. Characterisation of the spoilage microbiota in raw salmon (Salmo salar) steaks stored under vacuum or modified atmosphere packaging combining conventional methods and PCR-TTGE. Food Microbiology 2012, 30:164-172.
    • (2012) Food Microbiology , vol.30 , pp. 164-172
    • Macé, S.1    Cornet, J.2    Chevalier, F.3    Cardinal, M.4    Pilet, M.-F.5    Dousset, X.6    Joffraud, J.-J.7
  • 24
    • 0029097821 scopus 로고
    • Phylogenetic-relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel-electrophoresis of 16s rDNA fragments
    • Muyzer G., Teske A., Wirsen C.O., Jannasch H.W. Phylogenetic-relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel-electrophoresis of 16s rDNA fragments. Archives of Microbiology 1995, 164:165-172.
    • (1995) Archives of Microbiology , vol.164 , pp. 165-172
    • Muyzer, G.1    Teske, A.2    Wirsen, C.O.3    Jannasch, H.W.4
  • 25
    • 34250825855 scopus 로고    scopus 로고
    • The bacterial flora of vacuum-packed cold-smoked salmon stored at 7 °C, identified by direct 16S rRNA gene analysis and pure culture technique
    • Olofsson T.C., Ahrne S., Molin G. The bacterial flora of vacuum-packed cold-smoked salmon stored at 7 °C, identified by direct 16S rRNA gene analysis and pure culture technique. Journal of Applied Microbiology 2007, 103:1364-5072.
    • (2007) Journal of Applied Microbiology , vol.103 , pp. 1364-5072
    • Olofsson, T.C.1    Ahrne, S.2    Molin, G.3
  • 26
    • 0037719755 scopus 로고    scopus 로고
    • Effect of gutting on microbiological, chemical and sensory properties of aquacultured sea bass (Dicentrarchus labrax) stored in ice
    • Papadopoulos V., Chouliara I., Badeka A., Savvaidis I.N., Kontominas M.G. Effect of gutting on microbiological, chemical and sensory properties of aquacultured sea bass (Dicentrarchus labrax) stored in ice. Food Microbiology 2003, 20:411-420.
    • (2003) Food Microbiology , vol.20 , pp. 411-420
    • Papadopoulos, V.1    Chouliara, I.2    Badeka, A.3    Savvaidis, I.N.4    Kontominas, M.G.5
  • 27
    • 37549027613 scopus 로고    scopus 로고
    • SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
    • Pruesse E., Quast C., Knittel K., Fuchs B.M., Ludwig W., Peplies J., Glockner F.O. SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB. Nucleic Acids Research 2007, 35:7188-7196.
    • (2007) Nucleic Acids Research , vol.35 , pp. 7188-7196
    • Pruesse, E.1    Quast, C.2    Knittel, K.3    Fuchs, B.M.4    Ludwig, W.5    Peplies, J.6    Glockner, F.O.7
  • 28
    • 4143060529 scopus 로고    scopus 로고
    • Explorative multivariate analyses of 16S rRNA gene data from microbial communities in modified-atmosphere-packed salmon and coalfish
    • Rudi K., Maugesten T., Hannevik S.E., Nissen H. Explorative multivariate analyses of 16S rRNA gene data from microbial communities in modified-atmosphere-packed salmon and coalfish. Applied and Environmental Microbiology 2004, 70:5010-5018.
    • (2004) Applied and Environmental Microbiology , vol.70 , pp. 5010-5018
    • Rudi, K.1    Maugesten, T.2    Hannevik, S.E.3    Nissen, H.4
  • 29
    • 0028028182 scopus 로고
    • Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology
    • Stackenbrandt E., Goebel B.M. Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. International Journal of Systematic Bacteriology 1994, 44:846-849.
    • (1994) International Journal of Systematic Bacteriology , vol.44 , pp. 846-849
    • Stackenbrandt, E.1    Goebel, B.M.2
  • 30
    • 80054065901 scopus 로고    scopus 로고
    • Characterisation of the microbiota of Atlantic mackerel (Scomber scombrus)
    • Svanevik C.M., Lunestad B.T. Characterisation of the microbiota of Atlantic mackerel (Scomber scombrus). International Journal of Food Microbiology 2011, 151:164-170.
    • (2011) International Journal of Food Microbiology , vol.151 , pp. 164-170
    • Svanevik, C.M.1    Lunestad, B.T.2
  • 31
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0
    • Tamura K., Dudley J., Nei M., Kumar S. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology Evolution 2007, 24:1596-1599.
    • (2007) Molecular Biology Evolution , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 33
    • 0036135126 scopus 로고    scopus 로고
    • Characterization of Pseudomonas spp. associated with spoilage of gilt-head sea bream stored under various conditions
    • Tryfinopoulou P., Tsakalidou E., Nychas G.-J.E. Characterization of Pseudomonas spp. associated with spoilage of gilt-head sea bream stored under various conditions. Applied and Environmental Microbiology 2002, 68:65-72.
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 65-72
    • Tryfinopoulou, P.1    Tsakalidou, E.2    Nychas, G.-J.E.3
  • 35
    • 0025366456 scopus 로고
    • 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward D.M., Weller R., Bateson M.M. 16S rRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature (London) 1990, 345:63-65.
    • (1990) Nature (London) , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 36
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
    • Wintzingerode F.V., Göbel U.B., Stackebrandt E. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiological Reviews 1997, 21:213-229.
    • (1997) FEMS Microbiological Reviews , vol.21 , pp. 213-229
    • Wintzingerode, F.V.1    Göbel, U.B.2    Stackebrandt, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.