Modeling scientific research articles - Shifting perspectives and persistent issues

Open Scholarship: Authority, Community, and Sustainability in the Age of Web 2.0 - Proceedings of the 12th International Conference on Electronic Publishing, ELPUB 2008

Volumn , Issue , 2008, Pages 234-245

  De Waard, Anita ^a,b   Kircz, Joost ^c,d  

^a ELSEVIER MASSON   (France)

^b UTRECHT UNIVERSITY   (Netherlands)

^c AMSTERDAM UNIVERSITY OF APPLIED SCIENCES   (Netherlands)

^d Kircz Research Amsterdam   (Netherlands)

Author keywords

Metadata creation and usage; New scholarly constructs and discourse methods; Pragmatic and semantic web technologies; Scientific publishing models

Indexed keywords

ACADEMIC INSTITUTIONS; CELL BIOLOGY; ELSEVIER; HETEROGENEOUS DATA; NEW SCHOLARLY CONSTRUCTS AND DISCOURSE METHODS; SCIENTIFIC RESEARCHES; SEMANTIC DATA; SEMANTIC WEB TECHNOLOGY;

CYTOLOGY; ELECTRONIC PUBLISHING; METADATA; WORLD WIDE WEB;

RESEARCH;

EID: 84868368366     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (24)

1. Kircz, J.G. and F.A.P. Harmsze, "Modular scenarios in the electronic age," Conferentie Informatiewetenschap 2000. Doelen, Rotterdam 5 April 2000. In: P. van der Vet en P. de Bra (eds.) CS-Report 00-20. Proceedings Conferentie Informatiewetenschap 2000. De Doelen Utrecht, 5 April 2000. pp. 31-43.
2. Enna, S.J., D. B. Bylund, Preface, XPharm, doi:10.1016/B978-008055232-3. 09004-9
3. Stuckenschmidt, H., F. van Harmelen, A. de Waard, et.al., "Exploring Large Document Repositories with RDF Technology: The DOPE Project," IEEE Intelligent Systems, vol. 19, no. 3, pp. 34-40, May/Jun, 2004
4. Brickley D. (ed.), RDF Vocabulary Description Language 1.0: RDF Schema, W3C Recommendation 10 February 2004, http://www.w3.org/TR/rdf-schema
5. For more information, see http://www.info.embase.com/emtree/about/
6. Fluit C., M. Sabou, and F. van Harmelen, "Ontology-Based Information Visualization," Visualizing the Semantic Web, V. Geroimenko and C. Chen, eds., Springer-Verlag, 2003, pp. 36-48.
7. Waard, A. de and Tel, G., "The ABCDE Format: Enabling Semantic Conference Proceedings," In: Proceedings of the First Workshop on Semantic Wikis, European Semantic Web Conference (ESWC 2006), Budva, Montenegro, 2006.
8. Kircz, J. G. and Hans E. Roosendaal, "Understanding and shaping scientific information transfer,". In: Dennis Shaw and Howard Moore (eds). Electronic publishing in science. Proceedings of the ICSU Press/UNESCO expert conference February 1996. Unesco Paris 1996. pp. 106-116.
9. Kircz, J.G., "New practices for electronic publishing 1: Will the scientific paper keep its form," Learned Publishing. Volume 14. Number 4, October 2001. pp. 265-272.
10. Kircz, J.G., "New practices for electronic publishing 2: New forms of the scientific paper," Learned Publishing. Volume 15. Number 1, January 2002. pp. 27-32
11. Harmsze, F, "A modular structure for scientific articles in an electronic environment," PhD thesis, University of Amsterdam, February 9, 2000.
12. Garssen, B., "The nature of symptomatic argumentation," In: Frans H. van Eemeren, Rob Grootendorst, J Anthony Blair, Charles A. Wilards (eds.). Proceedings of the 4th International Conference of the International Society for the Study of Argumentation, Amsterdam, June 16-19 1998. Amsterdam: SICSAT, 1999.
13. Van Mulligen, E.M. et al., "Research for Research: Tools for Knowledge Discovery and Visualization," Proc. 2002 AMIA Ann Symp., Am. Medical Informatics Assn., 2002, pp. 835-839.
14. st Int'l Semantic Web Conf., LNCS 2342, SpringerVerlag, 2002, pp.54-68.
15. Broekstra J. and A. Kampman, "SeRQL: Querying and Transformation with a Second-Generation Language," technical white paper, Aduna/Vrije Universiteit Amsterdam, Jan. 2004.
16. Stuckenschmidt, H., A. de Waard, R. Bhogal et.al, "A Topic-Based Browser for Large Online Resources," In: Proceedings of the Proceedings of the 14th International Conference on Knowledge Engineering and Knowledge Management ({EKAW}'04). Editors E. Motta and N. Shadbolt. Series Lecture Notes in Artificial Intelligence.
17. Huynh, D., Stefano Mazzocchi, and David Karger. "Piggy Bank: Experience the Semantic Web Inside Your Web Browser", Proceedings International Semantic Web Conference (ISWC) 2005.
18. For definitions and examples, see http://en.wikipedia.org/wiki/Semantic- wiki
19. Pitkin, R.M., Branagan, M.A., Burmeister, L.F., "Accuracy of data in abstracts of published research articles," JAMA 281 (1999) 1110-1111
20. See e.g., the International Committee of Medical Journal Editors, "Uniform Requirements for Manuscripts Submitted to Biomedical Journals: Writing and Editing for Biomedical Publications," Updated October 2007, available online at http://www.icmje.org/
21. Waard, A. de, Breure, L., Kircz, J.G. & Oostendorp, H. van (2006), "Modeling Rhetoric in Scientific Publications," in: Current Research in Information Sciences and Technologies (pp. 352-356). Vicente P. Guerrero-Bote (Editor) (Ed.), Badajoz, Spain: Open Institute of Knowledge.
22. Waard, A. de, "A Semantic Modular Structure for Biology Articles," forthcoming
23. Waard, A. de, "A Pragmatic Structure for the Research Article," in: Proceedings ICPW'07: 2nd International Conference on the Pragmatic Web, 22-23 Oct. 2007, Tilburg: NL. (Eds.) Buckingham Shum, S., Lind, M. and Weigand, H. Published in: ACM Digital Library & Open University ePrint 9275.
24. Buckingham Shum, S., "Cohere: Towards Web 2.0 Argumentation," In: Proceedings, COMMA'08: 2nd International Conference on Computational Models of Argument, 28-30 May 2008, Toulouse. IOS Press: Amsterdam.