1H NMR-based metabolic profiling of urinary tract infection: Combining multiple statistical models and clinical data

Metabolomics

Volumn 8, Issue 6, 2012, Pages 1227-1235

  Nevedomskaya, Ekaterina ^a   Pacchiarotta, Tiziana ^a   Artemov, Artem ^a   Meissner, Axel ^a   van Nieuwkoop, Cees ^a,b   van Dissel, Jaap T ^a   Mayboroda, Oleg A ^a   Deelder, André M ^a  

^a LEIDEN UNIVERSITY MEDICAL CENTER   (Netherlands)

^b HAGA HOSPITAL   (Netherlands)

Author keywords

Clinical metabolomics; Data analysis; Metabolomics; NMR; Urinary tract infection

Indexed keywords

ADULT; ARTICLE; BACTERIAL COUNT; BACTERIUM CONTAMINATION; BACTERIUM IDENTIFICATION; CONTROLLED STUDY; DISCRIMINANT ANALYSIS; DISEASE MARKER; DISEASE SEVERITY; ESCHERICHIA COLI; FEMALE; HUMAN; MAJOR CLINICAL STUDY; MALE; METABOLITE; METABOLOMICS; MORBIDITY; PATIENT MONITORING; PREDICTION; PRINCIPAL COMPONENT ANALYSIS; PROTON NUCLEAR MAGNETIC RESONANCE; STATISTICAL MODEL; URINALYSIS; URINARY TRACT INFECTION;

BACTERIA (MICROORGANISMS);

EID: 84868349039     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-012-0411-y     Document Type: Article

References (29)

1. Adourian, A., Jennings, E., Balasubramanian, R., et al. (2008). Correlation network analysis for data integration and biomarker selection. Molecular BioSystems, 4(3), 249-259.
2. Bales, J. R., Nicholson, J. K., & Sadler, P. J. (1985). Two-dimensional proton nuclear magnetic resonance "maps" of acetaminophen metabolites in human urine. Clinical Chemistry, 31(5), 757-762.
3. Cloarec, O., Dumas, M. E., Craig, A., et al. (2005). Statistical total correlation spectroscopy: An exploratory approach for latent biomarker identification from metabolic H-1 NMR data sets. Analytical Chemistry, 77(5), 1282-1289.
4. Coron, A., Vanhamme, L., Antoine, J. P., et al. (2001). The filtering approach to solvent peak suppression in MRS: A critical review. Journal of Magnetic Resonance, 152(1), 26-40.
5. Gupta, A., Dwivedi, M., Gowda, G. A., et al. (2006). 1H NMR spectroscopy in the diagnosis of Klebsiella pneumoniae-induced urinary tract infection. NMR in Biomedicine, 19(8), 1055-1061.
6. Gupta, A., Dwivedi, M., Mahdi, A. A., et al. (2009). 1H-nuclear magnetic resonance spectroscopy for identifying and quantifying common uropathogens: a metabolic approach to the urinary tract infection. BJU International, 104(2), 236-244.
7. Gupta, A., Dwivedi, M., Nagana Gowda, G. A., et al. (2005). (1)H NMR spectroscopy in the diagnosis of Pseudomonas aeruginosa-induced urinary tract infection. NMR in Biomedicine, 18(5), 293-299.
8. Holmes, E., Wilson, I. D., & Nicholson, J. K. (2008). Metabolic phenotyping in health and disease. Cell, 134(5), 714-717.
9. Jansen, J. J., Hoefsloot, H. C. J., van der Greef, J., et al. (2005). Multilevel component analysis of time-resolved metabolic fingerprinting data. Analytica Chimica Acta, 530(2), 173-183.
10. Johnson, J. R. (2004). Laboratory diagnosis of urinary tract infections in adult patients. Clinical Infectious Diseases, 39(6), 873.
11. Kumar, A., Ernst, R. R., & Wuthrich, K. (1980). A two-dimensional nuclear Overhauser enhancement (2D NOE) experiment for the elucidation of complete proton-proton cross-relaxation networks in biological macromolecules. Biochemical and Biophysical Research Communications, 95(1), 1-6.
12. Lin, K., & Fajardo, K. (2008). Screening for asymptomatic bacteriuria in adults: evidence for the U. S. Preventive Services Task Force reaffirmation recommendation statement. Annals of Internal Medicine, 149(1), W20-W24.
13. Lindgren, F., Hansen, B., Karcher, W., et al. (1996). Model validation by permutation tests: Applications to variable selection. Journal of Chemometrics, 10(5-6), 521-532.
14. Lindon, J. C., & Nicholson, J. K. (2008). Analytical technologies for metabonomics and metabolomics, and multi-omic information recovery. Trac-Trends in Analytical Chemistry, 27(3), 194-204.
15. Mendes, P., Camacho, D., & de la Fuente, A. (2005). Modelling and simulation for metabolomics data analysis. Biochemical Society Transactions, 33(Pt 6), 1427-1429.
16. Nicholson, J. K., Holmes, E., & Wilson, I. D. (2005). Gut microorganisms, mammalian metabolism and personalized health care. Nature Reviews Microbiology, 3(5), 431-438.
17. Nicholson, J. K., Lindon, J. C., & Holmes, E. (1999). 'Metabonomics': Understanding the metabolic responses of living systems to pathophysiological stimuli via multivariate statistical analysis of biological NMR spectroscopic data. Xenobiotica, 29(11), 1181-1189.
18. Nocairi, H., Qannari, E. M., Vigneau, E., et al. (2005). Discrimination on latent components with respect to patterns. Application to multicollinear data. Computational Statistics and Data Analysis, 48(1), 139-147.
19. Price, W. S (1999) Water signal suppression in NMR spectroscopy. Annual Reports on Nmr Spectroscopy, 38 (38): 289-354.
20. Reubi, F. C. (1953). Glomerular filtration rate, renal blood flow and blood viscosity during and after diabetic coma. Circulation Research, 1(5), 410-413.
21. Swann, J., Wang, Y., Abecia, L., et al. (2009). Gut microbiome modulates the toxicity of hydrazine: a metabonomic study. Molecular BioSystems, 5(4), 351-355.
22. Vaidya, V. S., & Bonventre, J. V (2010). Biomarkers: In medicine, drug discovery, and environmental health. Hoboken, NJ: Wiley.
23. van der Starre, W. E., van Nieuwkoop, C., Paltansing, S., et al. (2011). Risk factors for fluoroquinolone-resistant Escherichia coli in adults with community-onset febrile urinary tract infection. Journal of Antimicrobial Chemotherapy, 66(3), 650-656.
24. van Nieuwkoop, C., Bonten, T. N., van't Wout, J. W. et al. (2010). Procalcitonin reflects bacteremia and bacterial load in urosepsis syndrome: a prospective observational study. Critical Care, 14(6), R206.
25. Vanzijl, P. C. M., Sukumar, S., Johnson, M. O., et al. (1994). Optimized shimming for high-resolution NMR using 3-dimensional image-based field-mapping. Journal of Magnetic Resonance Series A, 111(2), 203-207.
26. Westerhuis, J. A., Hoefsloot, H. C. J., Smit, S., et al. (2008). Assessment of PLSDA cross validation. Metabolomics, 4(1), 81-89.
27. Wilson, M. L., & Gaido, L. (2004). Laboratory diagnosis of urinary tract infections in adult patients. Clinical Infectious Diseases, 38(8), 1150-1158.
28. Woodcock, J. (2007). The prospects for "personalized medicine" in drug development and drug therapy. Clinical Pharmacology and Therapeutics, 81(2), 164-169.
29. Wu, P. S., & Otting, G. (2005). Rapid pulse length determination in high-resolution NMR. Journal of Magnetic Resonance, 176(1), 115-119.