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Volumn 12, Issue , 2012, Pages

A diploid wheat TILLING resource for wheat functional genomics

Author keywords

Lignin; Mutation frequency; Reverse genetics; TILLING; Triticum monococcum; Waxy

Indexed keywords

POACEAE; TRITICUM AESTIVUM; TRITICUM MONOCOCCUM;

EID: 84868333634     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-205     Document Type: Article
Times cited : (64)

References (52)
  • 1
    • 0017316711 scopus 로고
    • Nuclear DNA amounts in angiosperms
    • 10.1098/rstb.1976.0044, 6977
    • Bennett MD, Smith JB. Nuclear DNA amounts in angiosperms. Philos Trans R Soc Lond B Biol Sci 1976, 274:227-274. 10.1098/rstb.1976.0044, 6977.
    • (1976) Philos Trans R Soc Lond B Biol Sci , vol.274 , pp. 227-274
    • Bennett, M.D.1    Smith, J.B.2
  • 2
    • 0030850119 scopus 로고    scopus 로고
    • Nuclear DNA amounts in Angiosperms- 583 New Estimates
    • Bennet MD, Leitch IJ. Nuclear DNA amounts in Angiosperms- 583 New Estimates. Ann Bot 1997, 80:169-196.
    • (1997) Ann Bot , vol.80 , pp. 169-196
    • Bennet, M.D.1    Leitch, I.J.2
  • 3
    • 0034089040 scopus 로고    scopus 로고
    • Targeted screening for induced mutations
    • 10.1038/74542, 10748531
    • McCallum CM, Comai L, Greene EA, Henikoff S. Targeted screening for induced mutations. Nat Biotechnol 2000, 18(4):455-457. 10.1038/74542, 10748531.
    • (2000) Nat Biotechnol , vol.18 , Issue.4 , pp. 455-457
    • McCallum, C.M.1    Comai, L.2    Greene, E.A.3    Henikoff, S.4
  • 4
    • 0033760528 scopus 로고    scopus 로고
    • Targeted recovery of mutations in Drosophila
    • 1461331, 11063692
    • Bentley A, MacLennan B, Calvo J, Dearolf CR. Targeted recovery of mutations in Drosophila. Genetics 2000, 156:1169-1173. 1461331, 11063692.
    • (2000) Genetics , vol.156 , pp. 1169-1173
    • Bentley, A.1    MacLennan, B.2    Calvo, J.3    Dearolf, C.R.4
  • 7
    • 43449100324 scopus 로고    scopus 로고
    • TILLMore, a resource for the discovery of chemically induced mutants in barley
    • 10.1111/j.1467-7652.2008.00341.x, 18422888
    • Talame V, Bovina R, Sanguineti MC, Tuberosa R, Lundqvist U, Salvi S. TILLMore, a resource for the discovery of chemically induced mutants in barley. Plant Biotechnol J 2008, 6(5):477-485. 10.1111/j.1467-7652.2008.00341.x, 18422888.
    • (2008) Plant Biotechnol J , vol.6 , Issue.5 , pp. 477-485
    • Talame, V.1    Bovina, R.2    Sanguineti, M.C.3    Tuberosa, R.4    Lundqvist, U.5    Salvi, S.6
  • 9
    • 34247572994 scopus 로고    scopus 로고
    • Discovery of chemically induced mutations in rice by TILLING
    • 10.1186/1471-2229-7-19, 1858691, 17428339
    • Till BJ, Cooper J, Tai TH, Colowit P, Greene EA, Henikoff S, Comai L. Discovery of chemically induced mutations in rice by TILLING. BMC Plant Biol 2007, 7:19. 10.1186/1471-2229-7-19, 1858691, 17428339.
    • (2007) BMC Plant Biol , vol.7 , pp. 19
    • Till, B.J.1    Cooper, J.2    Tai, T.H.3    Colowit, P.4    Greene, E.A.5    Henikoff, S.6    Comai, L.7
  • 11
    • 54849436232 scopus 로고    scopus 로고
    • Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population
    • 10.1186/1471-2229-8-103, 2572618, 18854043
    • Xin Z, Wang ML, Barkley NA, Burow G, Franks C, Pederson G, Burke J. Applying genotyping (TILLING) and phenotyping analyses to elucidate gene function in a chemically induced sorghum mutant population. BMC Plant Biol 2008, 8:103. 10.1186/1471-2229-8-103, 2572618, 18854043.
    • (2008) BMC Plant Biol , vol.8 , pp. 103
    • Xin, Z.1    Wang, M.L.2    Barkley, N.A.3    Burow, G.4    Franks, C.5    Pederson, G.6    Burke, J.7
  • 13
    • 70349608873 scopus 로고    scopus 로고
    • A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat
    • 10.1186/1471-2229-9-115, 2748083, 19712486
    • Uauy C, Paraiso F, Colasuonno P, Tran RK, Tsai H, Berardi S, Comai L, Dubcovsky J. A modified TILLING approach to detect induced mutations in tetraploid and hexaploid wheat. BMC Plant Biol 2009, 9:115. 10.1186/1471-2229-9-115, 2748083, 19712486.
    • (2009) BMC Plant Biol , vol.9 , pp. 115
    • Uauy, C.1    Paraiso, F.2    Colasuonno, P.3    Tran, R.K.4    Tsai, H.5    Berardi, S.6    Comai, L.7    Dubcovsky, J.8
  • 15
    • 84863569612 scopus 로고    scopus 로고
    • Induced mutations in the starch branching enzyme II (SBEII) genes increase amylose and resistant starch content in pasta wheat
    • In press
    • Hazard B, ZhangX X, Colasuonno P, Uauy C, Beckles DM, Dubcovsky J. Induced mutations in the starch branching enzyme II (SBEII) genes increase amylose and resistant starch content in pasta wheat. Crop Sci 2012, In press.
    • (2012) Crop Sci
    • Hazard, B.1    ZhangX, X.2    Colasuonno, P.3    Uauy, C.4    Beckles, D.M.5    Dubcovsky, J.6
  • 17
    • 77954569490 scopus 로고    scopus 로고
    • Development and characterization of an oat TILLING-population and identification of mutations in lignin and β-glucan biosynthesis genes
    • 10.1186/1471-2229-10-86, 3017761, 20459868
    • Chawade A, Sikora P, Bräutigam M, Larsson M, Vivekanand V, Nakash MA, Chen T, Olsson O. Development and characterization of an oat TILLING-population and identification of mutations in lignin and β-glucan biosynthesis genes. BMC Plant Biol 2010, 10:86. 10.1186/1471-2229-10-86, 3017761, 20459868.
    • (2010) BMC Plant Biol , vol.10 , pp. 86
    • Chawade, A.1    Sikora, P.2    Bräutigam, M.3    Larsson, M.4    Vivekanand, V.5    Nakash, M.A.6    Chen, T.7    Olsson, O.8
  • 18
    • 77950648004 scopus 로고    scopus 로고
    • A rich TILLING resource for studying gene function in Brassica rapa
    • 10.1186/1471-2229-10-62, 2923536, 20380715
    • Stephenson P, Baker D, Girin T, Perez A, Amoah S, King GJ, Østergaard L. A rich TILLING resource for studying gene function in Brassica rapa. BMC Plant Biol 2010, 10:62. 10.1186/1471-2229-10-62, 2923536, 20380715.
    • (2010) BMC Plant Biol , vol.10 , pp. 62
    • Stephenson, P.1    Baker, D.2    Girin, T.3    Perez, A.4    Amoah, S.5    King, G.J.6    Østergaard, L.7
  • 19
    • 81055124884 scopus 로고    scopus 로고
    • Tomato TILLING Technology: Development of a Reverse Genetics Tool for the Efficient Isolation of Mutants from Micro-Tom Mutant Libraries
    • 10.1093/pcp/pcr134, 3212723, 21965606
    • Okabe Y, Asamizu E, Saito T, Matsukura C, Ariizumi T, Brès C, Rothan C, Mizoguchi T, Ezura H. Tomato TILLING Technology: Development of a Reverse Genetics Tool for the Efficient Isolation of Mutants from Micro-Tom Mutant Libraries. Plant Cell Physiol 2011, 52(11):1994-2005. 10.1093/pcp/pcr134, 3212723, 21965606.
    • (2011) Plant Cell Physiol , vol.52 , Issue.11 , pp. 1994-2005
    • Okabe, Y.1    Asamizu, E.2    Saito, T.3    Matsukura, C.4    Ariizumi, T.5    Brès, C.6    Rothan, C.7    Mizoguchi, T.8    Ezura, H.9
  • 21
    • 0034095825 scopus 로고    scopus 로고
    • Targeting induced local lesions IN genomes (TILLING) for plant functional genomics
    • 10.1104/pp.123.2.439, 1539256, 10859174
    • McCallum CM, Comai L, Greene EA, Henikoff S. Targeting induced local lesions IN genomes (TILLING) for plant functional genomics. Plant Physiol 2000, 123(2):439-442. 10.1104/pp.123.2.439, 1539256, 10859174.
    • (2000) Plant Physiol , vol.123 , Issue.2 , pp. 439-442
    • McCallum, C.M.1    Comai, L.2    Greene, E.A.3    Henikoff, S.4
  • 22
    • 33745352101 scopus 로고    scopus 로고
    • Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis
    • Alonso JM, Ecker JR. Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nature 2006, 524(7):524-536.
    • (2006) Nature , vol.524 , Issue.7 , pp. 524-536
    • Alonso, J.M.1    Ecker, J.R.2
  • 24
    • 84860736700 scopus 로고    scopus 로고
    • High-efficiency TALEN-based gene editing produces disease-resistant rice
    • 10.1038/nbt.2199, 22565958
    • Li T, Liu B, Spalding MH, Weeks DP, Yang B. High-efficiency TALEN-based gene editing produces disease-resistant rice. Nat Biotechnol 2012, 30:390-392. 10.1038/nbt.2199, 22565958.
    • (2012) Nat Biotechnol , vol.30 , pp. 390-392
    • Li, T.1    Liu, B.2    Spalding, M.H.3    Weeks, D.P.4    Yang, B.5
  • 26
    • 80755143074 scopus 로고    scopus 로고
    • High resolution melting analysis for the detection of EMS induced mutations in wheat SbeIIa genes
    • 10.1186/1471-2229-11-156, 3228712, 22074448
    • Botticella E, Sestili F, Hernandez-Lopez A, Phillips A, Lafiandra D. High resolution melting analysis for the detection of EMS induced mutations in wheat SbeIIa genes. BMC Plant Biol 2011, 11:156. 10.1186/1471-2229-11-156, 3228712, 22074448.
    • (2011) BMC Plant Biol , vol.11 , pp. 156
    • Botticella, E.1    Sestili, F.2    Hernandez-Lopez, A.3    Phillips, A.4    Lafiandra, D.5
  • 27
    • 68649120176 scopus 로고    scopus 로고
    • Genetic modification of lignin biosynthesis for improved biofuel production
    • Hisano H, Nandakumar R, Wang ZY. Genetic modification of lignin biosynthesis for improved biofuel production. In Vitro Cell Dev Biol Plant 2009, 45:306-313.
    • (2009) In Vitro Cell Dev Biol Plant , vol.45 , pp. 306-313
    • Hisano, H.1    Nandakumar, R.2    Wang, Z.Y.3
  • 28
    • 43549117046 scopus 로고    scopus 로고
    • Improvement of biomass through lignin modification
    • 10.1111/j.1365-313X.2008.03457.x, 18476864
    • Li X, Weng JK, Chapple C. Improvement of biomass through lignin modification. Plant J 2008, 54(4):569-581. 10.1111/j.1365-313X.2008.03457.x, 18476864.
    • (2008) Plant J , vol.54 , Issue.4 , pp. 569-581
    • Li, X.1    Weng, J.K.2    Chapple, C.3
  • 29
    • 0034088743 scopus 로고    scopus 로고
    • The genes encoding granule-bound starch synthases at the waxy loci of the A, B, and D progenitors of common wheat
    • Yan L, Bhave M, Fairclough R, Konik C, Rahman S, Appels R. The genes encoding granule-bound starch synthases at the waxy loci of the A, B, and D progenitors of common wheat. Genome 2000, 43(2):264-272.
    • (2000) Genome , vol.43 , Issue.2 , pp. 264-272
    • Yan, L.1    Bhave, M.2    Fairclough, R.3    Konik, C.4    Rahman, S.5    Appels, R.6
  • 30
    • 68149165614 scopus 로고    scopus 로고
    • Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm
    • Kumar P, Henikoff S, Ng PC. Predicting the effects of coding non-synonymous variants on protein function using the SIFT algorithm. Nat Protoc 2009, 4(7):1073-1081.
    • (2009) Nat Protoc , vol.4 , Issue.7 , pp. 1073-1081
    • Kumar, P.1    Henikoff, S.2    Ng, P.C.3
  • 31
    • 79959814400 scopus 로고    scopus 로고
    • PSSM viewer
    • PSSM viewer. , http://www.ncbi.nlm.nih.gov/Class/Structure/pssm/pssm_viewer.cgi
  • 34
    • 74549212025 scopus 로고    scopus 로고
    • A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis
    • 10.1186/1471-2229-9-147, 2803491, 20003424
    • Martín B, Ramiro M, Martínez-Zapater JM, Alonso-Blanco C. A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis. BMC Plant Biology 2009, 9:147. 10.1186/1471-2229-9-147, 2803491, 20003424.
    • (2009) BMC Plant Biology , vol.9 , pp. 147
    • Martín, B.1    Ramiro, M.2    Martínez-Zapater, J.M.3    Alonso-Blanco, C.4
  • 35
    • 77049093783 scopus 로고    scopus 로고
    • TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1
    • 10.1186/1756-0500-2-258, 2803498, 20017921
    • Gottwald S, Bauer P, Komatsuda T, Lundqvist U, Stein N. TILLING in the two-rowed barley cultivar 'Barke' reveals preferred sites of functional diversity in the gene HvHox1. BMC Res Notes 2009, 2:258. 10.1186/1756-0500-2-258, 2803498, 20017921.
    • (2009) BMC Res Notes , vol.2 , pp. 258
    • Gottwald, S.1    Bauer, P.2    Komatsuda, T.3    Lundqvist, U.4    Stein, N.5
  • 36
    • 33845975597 scopus 로고    scopus 로고
    • Rapid method for detecting SNPs on agarose gels and its application in candidate gene mapping
    • Raghavan C, Naredo M, Wang H, Atienza G, Liu B, Qiu F, McNally K, Leung H. Rapid method for detecting SNPs on agarose gels and its application in candidate gene mapping. Mol Breed 2007, 19:87-101.
    • (2007) Mol Breed , vol.19 , pp. 87-101
    • Raghavan, C.1    Naredo, M.2    Wang, H.3    Atienza, G.4    Liu, B.5    Qiu, F.6    McNally, K.7    Leung, H.8
  • 37
    • 18744393119 scopus 로고    scopus 로고
    • Comparison of PCR-based mutation detection methods and application for identification of mouse Sult1a1 mutant embryonic stem cell clones using pooled templates
    • 10.1002/humu.20168, 15832303
    • Greber B, Tandara H, Lehrach H, Himmelbauer H. Comparison of PCR-based mutation detection methods and application for identification of mouse Sult1a1 mutant embryonic stem cell clones using pooled templates. Hum Mutat 2005, 25:483-490. 10.1002/humu.20168, 15832303.
    • (2005) Hum Mutat , vol.25 , pp. 483-490
    • Greber, B.1    Tandara, H.2    Lehrach, H.3    Himmelbauer, H.4
  • 40
    • 77954223026 scopus 로고    scopus 로고
    • Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing
    • 10.1101/gr.102921.109, 2892099, 20472684
    • Wang H, Chattopadhyay A, Li Z, Daines B, Li Y, Gao C, Gibbs R, Zhang K, Chen R. Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing. Genome Res 2010, 20(7):981-988. 10.1101/gr.102921.109, 2892099, 20472684.
    • (2010) Genome Res , vol.20 , Issue.7 , pp. 981-988
    • Wang, H.1    Chattopadhyay, A.2    Li, Z.3    Daines, B.4    Li, Y.5    Gao, C.6    Gibbs, R.7    Zhang, K.8    Chen, R.9
  • 41
  • 42
    • 0039552100 scopus 로고    scopus 로고
    • Three 4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms
    • 10.1046/j.1365-313X.1999.00491.x, 10417722
    • Ehlting J, Büttner D, Wang Q, Douglas CJ, Somssich IE, Kombrink E. Three 4-coumarate:coenzyme A ligases in Arabidopsis thaliana represent two evolutionarily divergent classes in angiosperms. Plant J 1999, 19:9-20. 10.1046/j.1365-313X.1999.00491.x, 10417722.
    • (1999) Plant J , vol.19 , pp. 9-20
    • Ehlting, J.1    Büttner, D.2    Wang, Q.3    Douglas, C.J.4    Somssich, I.E.5    Kombrink, E.6
  • 43
    • 0036179613 scopus 로고    scopus 로고
    • Divergent members of a soybean (Glycine max L.) 4-coumarate:coenzyme A ligase gene family
    • 10.1046/j.1432-1033.2002.02775.x, 11856365
    • Lindermayr C, Möllers B, Fliegmann J, Uhlmann A, Lottspeich F, Meimberg H, Ebel J. Divergent members of a soybean (Glycine max L.) 4-coumarate:coenzyme A ligase gene family. Eur J Biochem 2002, 269:1304-1315. 10.1046/j.1432-1033.2002.02775.x, 11856365.
    • (2002) Eur J Biochem , vol.269 , pp. 1304-1315
    • Lindermayr, C.1    Möllers, B.2    Fliegmann, J.3    Uhlmann, A.4    Lottspeich, F.5    Meimberg, H.6    Ebel, J.7
  • 44
    • 1242296765 scopus 로고    scopus 로고
    • The 4-coumarate:CoA ligase gene family in Arabidopsis thaliana comprises one rare, sinapate-activating and three commonly occurring isoenzymes
    • 10.1073/pnas.0307307101, 357076, 14769935
    • Hamberger B, Hahlbrock K. The 4-coumarate:CoA ligase gene family in Arabidopsis thaliana comprises one rare, sinapate-activating and three commonly occurring isoenzymes. Proc Natl Acad Sci USA 2004, 101:2209-2214. 10.1073/pnas.0307307101, 357076, 14769935.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 2209-2214
    • Hamberger, B.1    Hahlbrock, K.2
  • 46
    • 0037447081 scopus 로고    scopus 로고
    • Combinatorial modification of multiple lignin traits in trees through multigene cotransformation
    • 10.1073/pnas.0831166100, 153659, 12668766
    • Li L, Zhou Y, Cheng X, Sun J, Marita JM, Ralph J, Chiang VL. Combinatorial modification of multiple lignin traits in trees through multigene cotransformation. Proc Natl Acad Sci USA 2003, 100:4939-4944. 10.1073/pnas.0831166100, 153659, 12668766.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4939-4944
    • Li, L.1    Zhou, Y.2    Cheng, X.3    Sun, J.4    Marita, J.M.5    Ralph, J.6    Chiang, V.L.7
  • 47
    • 67349228800 scopus 로고    scopus 로고
    • Grass lignin acylation: p-coumaroyl transferase activity and cell wall characteristics of C3 and C4 grasses
    • 10.1007/s00425-009-0900-z, 19288269
    • Hatfield RD, Marita JM, Frost K, Grabber J, Ralph J, Lu F, Kim H. Grass lignin acylation: p-coumaroyl transferase activity and cell wall characteristics of C3 and C4 grasses. Planta 2009, 229:1253-1267. 10.1007/s00425-009-0900-z, 19288269.
    • (2009) Planta , vol.229 , pp. 1253-1267
    • Hatfield, R.D.1    Marita, J.M.2    Frost, K.3    Grabber, J.4    Ralph, J.5    Lu, F.6    Kim, H.7
  • 48
    • 80053581937 scopus 로고    scopus 로고
    • Functional characterization of evolutionarily divergent 4-coumarate:coenzyme A ligases in rice
    • 10.1104/pp.111.178301, 3192572, 21807887
    • Gui J, Shen J, Laigeng L. Functional characterization of evolutionarily divergent 4-coumarate:coenzyme A ligases in rice. Plant Physiol 2011, 157:574-586. 10.1104/pp.111.178301, 3192572, 21807887.
    • (2011) Plant Physiol , vol.157 , pp. 574-586
    • Gui, J.1    Shen, J.2    Laigeng, L.3
  • 49
    • 39149096275 scopus 로고    scopus 로고
    • MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice
    • 10.1007/s00438-007-0293-2, 17952471
    • Suzuki T, Eiguchi M, Kumamaru T, Satoh H, Matsusaka H, Moriguchi K, Nagato Y, Kurata N. MNU-induced mutant pools and high performance TILLING enable finding of any gene mutation in rice. Mol Genet Genomics 2008, 279:213-223. 10.1007/s00438-007-0293-2, 17952471.
    • (2008) Mol Genet Genomics , vol.279 , pp. 213-223
    • Suzuki, T.1    Eiguchi, M.2    Kumamaru, T.3    Satoh, H.4    Matsusaka, H.5    Moriguchi, K.6    Nagato, Y.7    Kurata, N.8
  • 50
    • 84872270959 scopus 로고    scopus 로고
    • SPIDEY
    • SPIDEY SPIDEY., http://www.ncbi.nlm.nih.gov/IEB/Research/Ostell/Spidey/
  • 51
    • 34548848797 scopus 로고    scopus 로고
    • A protocol for TILLING and Ecotilling in plants and animals
    • 10.1038/nprot.2006.329, 17406493
    • Till BJ, Zerr T, Comai L, Henikoff S. A protocol for TILLING and Ecotilling in plants and animals. Nature Protocols 2006, 1:2465-2477. 10.1038/nprot.2006.329, 17406493.
    • (2006) Nature Protocols , vol.1 , pp. 2465-2477
    • Till, B.J.1    Zerr, T.2    Comai, L.3    Henikoff, S.4
  • 52
    • 0002152503 scopus 로고
    • The determination of lignin
    • Heidelberg: Springer Verlag, Lin SY, Dence CW
    • Dence CW. The determination of lignin. Methods in lignin chemistry 1992, 33-61. Heidelberg: Springer Verlag, Lin SY, Dence CW.
    • (1992) Methods in lignin chemistry , pp. 33-61
    • Dence, C.W.1


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