Evolutionary stability of a refactored phage genome

ACS Synthetic Biology

Volumn 1, Issue 9, 2012, Pages 425-430

  Springman, Rachael ^a   Molineux, Ian J ^a   Duong, Chanan ^a   Bull, Robert J ^a   Bull, James J ^a  

^a UNIVERSITY OF TEXAS AT AUSTIN   (United States)

Author keywords

Adaptation; Design element; Engineering; Experimental evolution; Genome

Indexed keywords

ARTICLE; BACTERIOPHAGE; DNA MODIFICATION; EVOLUTIONARY ADAPTATION; GENE DELETION; GENE INSERTION; GENE SEQUENCE; GENETIC ENGINEERING; GENETIC STABILITY; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; REGULATORY SEQUENCE; SYNTHETIC BIOLOGY; TRANSLATION INITIATION; WILD TYPE;

ADAPTATION, PHYSIOLOGICAL; BACTERIOPHAGE T7; DNA, VIRAL; ESCHERICHIA COLI; EVOLUTION, MOLECULAR; GENETIC ENGINEERING; GENOME, VIRAL; REGULATORY SEQUENCES, NUCLEIC ACID; SYNTHETIC BIOLOGY;

EID: 84868253081     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/sb300040v     Document Type: Article

References (13)

1. Shetty, R. P., Endy, D., and Knight, T. F., Jr. (2008) Engineering BioBrick vectors from BioBrick parts. J. Biol. Eng. 2, 5.
2. Molineux, I. J. (2006) The T7 group. In The Bacteriophages, 2nd ed., pp 277-301, Oxford University Press, Oxford; New York.
3. Bull, J. J., and Molineux, I. J. (2008) Predicting evolution from genomics: Experimental evolution of bacteriophage T7. Heredity 100, 453-463. (Pubitemid 351574181)
4. Endy, D., You, L., Yin, J., and Molineux, I. J. (2000) Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes. Proc. Natl. Acad. Sci. U.S.A. 97, 5375-5380. (Pubitemid 30313726)
5. Chan, L. Y., Kosuri, S., and Endy, D. (2005) Refactoring bacteriophage T7. Mol. Syst. Biol. 1, 2005.0018.
6. Bull, J. J., Heineman, R., and Wilke, C. O. (2011) The phenotypefitness map in experimental evolution of phages. PLoS ONE 6, e27796.
7. Hirsch-Kauffmann, M., Herrlich, P., Ponta, H., and Schweiger, M. Helper function of T7 protein kinase in virus propagation. Nature 255, 508-510.
8. Rokyta, D. R., Badgett, M. R., Molineux, I. J., and Bull, J. J. (2002) Experimental genomic evolution: Extensive compensation for loss of DNA ligase activity in a virus. Mol. Biol. Evol. 19, 230-238. (Pubitemid 34184595)
9. Sleight, S. C., Bartley, B. A., Lieviant, J. A., and Sauro, H. M. (2010) Designing and engineering evolutionary robust genetic circuits. J. Biol. Eng. 4, 12.
10. Heineman, R., and Bull, J. J. (2007) Testing optimality with experimental evolution: Lysis time in a bacteriophage. Evolution 61, 1695-1709. (Pubitemid 47013467)
11. Wichman, H. A., Millstein, J., and Bull, J. J. (2005) Adaptive molecular evolution for 13,000 phage generations: A possible arms race. Genetics 170, 19-31. (Pubitemid 40799968)
12. Bull, J. J., Millstein, J., Orcutt, J., and Wichman, H. A. (2006) Evolutionary feedback mediated through population density, illustrated with viruses in chemostats. Am. Nat. 167, E39-51.
13. Barrick, J. E., Yu, D. S., Yoon, S. H., Jeong, H., Oh, T. K., Schneider, D., Lenski, R. E., and Kim, J. F. (2009) Genome evolution and adaptation in a long-term experiment with Escherichia coli. Nature 461, 1243-1247.