메뉴 건너뛰기




Volumn 287, Issue 44, 2012, Pages 37352-37361

New insights into the mechanism of initial transcription: The T7 RNA polymerase mutant p266l transitions to elongation at longer RNA lengths than wild type

Author keywords

[No Author keywords available]

Indexed keywords

MULTISUBUNIT; RNA POLYMERASE; WILD TYPES;

EID: 84868237254     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M112.370643     Document Type: Article
Times cited : (15)

References (36)
  • 1
    • 4944262080 scopus 로고    scopus 로고
    • Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase
    • Gong, P., Esposito, E. A., and Martin, C. T. (2004) Initial bubble collapse plays a key role in the transition to elongation in T7 RNA polymerase. J. Biol. Chem. 279, 44277-44285
    • (2004) J. Biol. Chem. , vol.279 , pp. 44277-44285
    • Gong, P.1    Esposito, E.A.2    Martin, C.T.3
  • 2
    • 0037112082 scopus 로고    scopus 로고
    • Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase
    • Yin, Y. W., and Steitz, T. A. (2002) Structural basis for the transition from initiation to elongation transcription in T7 RNA polymerase. Science 298, 1387-1395
    • (2002) Science , vol.298 , pp. 1387-1395
    • Yin, Y.W.1    Steitz, T.A.2
  • 4
    • 0019319452 scopus 로고
    • Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter
    • Carpousis, A. J., and Gralla, J. D. (1980) Cycling of ribonucleic acid polymerase to produce oligonucleotides during initiation in vitro at the lac UV5 promoter. Biochemistry 19, 3245-3253
    • (1980) Biochemistry , vol.19 , pp. 3245-3253
    • Carpousis, A.J.1    Gralla, J.D.2
  • 5
    • 0023924749 scopus 로고
    • Processivity in early stages of transcription by T7 RNA polymerase
    • Martin, C. T., Muller, D. K., and Coleman, J. E. (1988) Processivity in early stages of transcription by T7 RNA polymerase. Biochemistry 27, 3966-3974
    • (1988) Biochemistry , vol.27 , pp. 3966-3974
    • Martin, C.T.1    Muller, D.K.2    Coleman, J.E.3
  • 6
    • 66149123741 scopus 로고    scopus 로고
    • Direct detection of abortive RNA transcripts in vivo
    • Goldman, S. R., Ebright, R. H., and Nickels, B. E. (2009) Direct detection of abortive RNA transcripts in vivo. Science 324, 927-928
    • (2009) Science , vol.324 , pp. 927-928
    • Goldman, S.R.1    Ebright, R.H.2    Nickels, B.E.3
  • 7
    • 78650566210 scopus 로고    scopus 로고
    • Pol II waiting in the starting gates: Regulating the transition from transcription initiation into productive elongation
    • Nechaev, S., and Adelman, K. (2011) Pol II waiting in the starting gates: regulating the transition from transcription initiation into productive elongation. Biochim. Biophys. Acta 1809, 34-45
    • (2011) Biochim. Biophys. Acta , vol.1809 , pp. 34-45
    • Nechaev, S.1    Adelman, K.2
  • 9
    • 33751212468 scopus 로고    scopus 로고
    • Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism
    • Kapanidis, A. N., Margeat, E., Ho, S. O., Kortkhonjia, E., Weiss, S., and Ebright, R. H. (2006) Initial transcription by RNA polymerase proceeds through a DNA-scrunching mechanism. Science 314, 1144-1147
    • (2006) Science , vol.314 , pp. 1144-1147
    • Kapanidis, A.N.1    Margeat, E.2    Ho, S.O.3    Kortkhonjia, E.4    Weiss, S.5    Ebright, R.H.6
  • 10
    • 0033579380 scopus 로고    scopus 로고
    • Structure of a transcribing T7 RNA polymerase initiation complex
    • Cheetham, G. M., and Steitz, T. A. (1999) Structure of a transcribing T7 RNA polymerase initiation complex. Science 286, 2305-2309
    • (1999) Science , vol.286 , pp. 2305-2309
    • Cheetham, G.M.1    Steitz, T.A.2
  • 11
    • 33751218319 scopus 로고    scopus 로고
    • Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching
    • Revyakin, A., Liu, C., Ebright, R. H., and Strick, T. R. (2006) Abortive initiation and productive initiation by RNA polymerase involve DNA scrunching. Science 314, 1139-1143
    • (2006) Science , vol.314 , pp. 1139-1143
    • Revyakin, A.1    Liu, C.2    Ebright, R.H.3    Strick, T.R.4
  • 12
    • 80051494401 scopus 로고    scopus 로고
    • Direct tests of the energetic basis of abortive cycling in transcription
    • Vahia, A. V., and Martin, C. T. (2011) Direct tests of the energetic basis of abortive cycling in transcription. Biochemistry 50, 7015-7022
    • (2011) Biochemistry , vol.50 , pp. 7015-7022
    • Vahia, A.V.1    Martin, C.T.2
  • 14
    • 0022493193 scopus 로고
    • Transcription by T7 RNA polymerase is not zinc-dependent and is abolished on amidomethylation of cysteine-347
    • King, G. C., Martin, C. T., Pham, T. T., and Coleman, J. E. (1986) Transcription by T7 RNA polymerase is not zinc-dependent and is abolished on amidomethylation of cysteine-347. Biochemistry 25, 36-40
    • (1986) Biochemistry , vol.25 , pp. 36-40
    • King, G.C.1    Martin, C.T.2    Pham, T.T.3    Coleman, J.E.4
  • 15
    • 0031558759 scopus 로고    scopus 로고
    • Identification of a minimal binding element within the T7 RNA polymerase promoter
    • Ujvári, A., and Martin, C. T. (1997) Identification of a minimal binding element within the T7 RNA polymerase promoter. J. Mol. Biol. 273, 775-781
    • (1997) J. Mol. Biol. , vol.273 , pp. 775-781
    • Ujvári, A.1    Martin, C.T.2
  • 16
    • 0023651444 scopus 로고
    • Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates
    • Milligan, J. F., Groebe, D. R., Witherell, G. W., and Uhlenbeck, O. C. (1987) Oligoribonucleotide synthesis using T7 RNA polymerase and synthetic DNA templates. Nucleic Acids Res. 15, 8783-8798
    • (1987) Nucleic Acids Res. , vol.15 , pp. 8783-8798
    • Milligan, J.F.1    Groebe, D.R.2    Witherell, G.W.3    Uhlenbeck, O.C.4
  • 17
    • 0027155574 scopus 로고
    • Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing singlestranded regions
    • Maslak, M., and Martin, C. T. (1993) Kinetic analysis of T7 RNA polymerase transcription initiation from promoters containing singlestranded regions. Biochemistry 32, 4281-4285
    • (1993) Biochemistry , vol.32 , pp. 4281-4285
    • Maslak, M.1    Martin, C.T.2
  • 18
    • 33745232330 scopus 로고    scopus 로고
    • Sequential release of promoter contacts during transcription initiation to elongation transition
    • Bandwar, R. P., Tang, G. Q., and Patel, S. S. (2006) Sequential release of promoter contacts during transcription initiation to elongation transition. J. Mol. Biol. 360, 466-483
    • (2006) J. Mol. Biol. , vol.360 , pp. 466-483
    • Bandwar, R.P.1    Tang, G.Q.2    Patel, S.S.3
  • 20
    • 76049130687 scopus 로고    scopus 로고
    • Real time observation of the transition from transcription initiation to elongation of the RNA polymerase
    • Tang, G. Q., Roy, R., Bandwar, R. P., Ha, T., and Patel, S. S. (2009) Real time observation of the transition from transcription initiation to elongation of the RNA polymerase. Proc. Natl. Acad. Sci. U.S.A. 106, 22175-22180
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 22175-22180
    • Tang, G.Q.1    Roy, R.2    Bandwar, R.P.3    Ha, T.4    Patel, S.S.5
  • 21
    • 0037033076 scopus 로고    scopus 로고
    • Characterization of T7 RNA polymerase transcription complexes assembled on nucleic acid scaffolds
    • Temiakov, D., Anikin, M., and McAllister, W. T. (2002) Characterization of T7 RNA polymerase transcription complexes assembled on nucleic acid scaffolds. J. Biol. Chem. 277, 47035-47043
    • (2002) J. Biol. Chem. , vol.277 , pp. 47035-47043
    • Temiakov, D.1    Anikin, M.2    McAllister, W.T.3
  • 22
    • 0026606938 scopus 로고
    • Model for the mechanism of bacteriophage T7 RNAP transcription initiation and termination
    • Sousa, R., Patra, D., and Lafer, E. M. (1992) Model for the mechanism of bacteriophage T7 RNAP transcription initiation and termination. J. Mol. Biol. 224, 319-334
    • (1992) J. Mol. Biol. , vol.224 , pp. 319-334
    • Sousa, R.1    Patra, D.2    Lafer, E.M.3
  • 23
    • 0023654344 scopus 로고
    • Interactions of a proteolytically nicked RNA polymerase of bacteriophage T7 with its promoter
    • Ikeda, R. A., and Richardson, C. C. (1987) Interactions of a proteolytically nicked RNA polymerase of bacteriophage T7 with its promoter. J. Biol. Chem. 262, 3800-3808
    • (1987) J. Biol. Chem. , vol.262 , pp. 3800-3808
    • Ikeda, R.A.1    Richardson, C.C.2
  • 24
    • 0023102647 scopus 로고
    • A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter
    • Straney, D. C., and Crothers, D. M. (1987) A stressed intermediate in the formation of stably initiated RNA chains at the Escherichia coli lac UV5 promoter. J. Mol. Biol. 193, 267-278
    • (1987) J. Mol. Biol. , vol.193 , pp. 267-278
    • Straney, D.C.1    Crothers, D.M.2
  • 25
    • 28944439650 scopus 로고    scopus 로고
    • Extended upstream A-T sequence increases T7 promoter strength
    • Tang, G. Q., Bandwar, R. P., and Patel, S. S. (2005) Extended upstream A-T sequence increases T7 promoter strength. J. Biol. Chem. 280, 40707-40713
    • (2005) J. Biol. Chem. , vol.280 , pp. 40707-40713
    • Tang, G.Q.1    Bandwar, R.P.2    Patel, S.S.3
  • 26
    • 0023749703 scopus 로고
    • Processivity of proteolytically modified forms of T7 RNA polymerase
    • Muller, D. K., Martin, C. T., and Coleman, J. E. (1988) Processivity of proteolytically modified forms of T7 RNA polymerase. Biochemistry 27, 5763-5771
    • (1988) Biochemistry , vol.27 , pp. 5763-5771
    • Muller, D.K.1    Martin, C.T.2    Coleman, J.E.3
  • 27
    • 7244227984 scopus 로고    scopus 로고
    • Cross-linking of promoter DNA to T7 RNA polymerase does not prevent formation of a stable elongation complex
    • Esposito, E. A., and Martin, C. T. (2004) Cross-linking of promoter DNA to T7 RNA polymerase does not prevent formation of a stable elongation complex. J. Biol. Chem. 279, 44270-44276
    • (2004) J. Biol. Chem. , vol.279 , pp. 44270-44276
    • Esposito, E.A.1    Martin, C.T.2
  • 28
    • 54949100000 scopus 로고    scopus 로고
    • The structure of a transcribing T7 RNA polymerase in transition from initiation to elongation
    • Durniak, K. J., Bailey, S., and Steitz, T. A. (2008) The structure of a transcribing T7 RNA polymerase in transition from initiation to elongation. Science 322, 553-557
    • (2008) Science , vol.322 , pp. 553-557
    • Durniak, K.J.1    Bailey, S.2    Steitz, T.A.3
  • 29
    • 33845967859 scopus 로고    scopus 로고
    • Transient state kinetics of transcription elongation by T7 RNA polymerase
    • Anand, V. S., and Patel, S. S. (2006) Transient state kinetics of transcription elongation by T7 RNA polymerase. J. Biol. Chem. 281, 35677-35685
    • (2006) J. Biol. Chem. , vol.281 , pp. 35677-35685
    • Anand, V.S.1    Patel, S.S.2
  • 30
    • 0037123659 scopus 로고    scopus 로고
    • Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution
    • Murakami, K. S., Masuda, S., and Darst, S. A. (2002) Structural basis of transcription initiation: RNA polymerase holoenzyme at 4 Å resolution. Science 296, 1280-1284
    • (2002) Science , vol.296 , pp. 1280-1284
    • Murakami, K.S.1    Masuda, S.2    Darst, S.A.3
  • 33
    • 0037458717 scopus 로고    scopus 로고
    • 70 reduce abortive transcription and enhance promoter escape
    • 70 reduce abortive transcription and enhance promoter escape. J. Biol. Chem. 278, 5539-5547
    • (2003) J. Biol. Chem. , vol.278 , pp. 5539-5547
    • Cashel, M.1    Hsu, L.M.2    Hernandez, V.J.3
  • 34
    • 0029743489 scopus 로고    scopus 로고
    • 70 is implicated in the process of abortive transcription
    • 70 is implicated in the process of abortive transcription. J. Biol. Chem. 271, 18775-18779
    • (1996) J. Biol. Chem. , vol.271 , pp. 18775-18779
    • Hernandez, V.J.1    Hsu, L.M.2    Cashel, M.3
  • 35
    • 1142274214 scopus 로고    scopus 로고
    • Structural basis of transcription: An RNA polymerase II-TFIIB cocrystal at 4.5 Å
    • Bushnell, D. A., Westover, K. D., Davis, R. E., and Kornberg, R. D. (2004) Structural basis of transcription: an RNA polymerase II-TFIIB cocrystal at 4.5 Å. Science 303, 983-988
    • (2004) Science , vol.303 , pp. 983-988
    • Bushnell, D.A.1    Westover, K.D.2    Davis, R.E.3    Kornberg, R.D.4
  • 36
    • 21244484548 scopus 로고    scopus 로고
    • The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II
    • Pal, M., Ponticelli, A. S., and Luse, D. S. (2005) The role of the transcription bubble and TFIIB in promoter clearance by RNA polymerase II. Mol. Cell 19, 101-110
    • (2005) Mol. Cell , vol.19 , pp. 101-110
    • Pal, M.1    Ponticelli, A.S.2    Luse, D.S.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.