메뉴 건너뛰기




Volumn 54, Issue 2, 2012, Pages 145-153

New amino acid residue type identification experiments valid for protonated and deuterated proteins

Author keywords

Amino acid residue type editing; HN(CO)CACB; Intra HNCACB; Proteins; Sequential assignment; Triple resonance experiments

Indexed keywords

AMIDE; AMINO ACID; LIGAND; PROTEIN;

EID: 84868196979     PISSN: 09252738     EISSN: 15735001     Source Type: Journal    
DOI: 10.1007/s10858-012-9665-y     Document Type: Article
Times cited : (17)

References (33)
  • 1
    • 0035072251 scopus 로고    scopus 로고
    • 3 groups in Val and Leu residues
    • DOI 10.1023/A:1011262916235
    • Atreya HS, Chary KVR (2001) Selective 'unlabeling' of amino acids in fractionally C-13 labeled proteins: An approach for stereospecific NMR assignments of CH3 groups in Val and Leu residues. J Biomol NMR 19:267-272 (Pubitemid 32288266)
    • (2001) Journal of Biomolecular NMR , vol.19 , Issue.3 , pp. 267-272
    • Atreya, H.S.1    Chary, K.V.R.2
  • 2
    • 0033947784 scopus 로고    scopus 로고
    • A tracked approach for automated NMR assignments in proteins (TATAPRO)
    • DOI 10.1023/A:1008315111278
    • Atreya HS, Sahu SC, Chary KVR, Govil G (2000) A tracked approach for automated NMR assignments in proteins (TATAPRO). J Biomol NMR 17:125-136 (Pubitemid 30452332)
    • (2000) Journal of Biomolecular NMR , vol.17 , Issue.2 , pp. 125-136
    • Atreya, H.S.1    Sahu, S.C.2    Chary, K.V.R.3    Govil, G.4
  • 3
    • 50349088784 scopus 로고    scopus 로고
    • Identification of C-terminal neighbors of amino acid residues without an aliphatic 13Cc as an aid to NMR assignments in proteins
    • Barnwal RP, Rout AK, Atreya HS, Chary KVR (2008) Identification of C-terminal neighbors of amino acid residues without an aliphatic 13Cc as an aid to NMR assignments in proteins. J Biomol NMR 41:191-197
    • (2008) J Biomol NMR , vol.41 , pp. 191-197
    • Barnwal, R.P.1    Rout, A.K.2    Atreya, H.S.3    Chary, K.V.R.4
  • 7
    • 0030093948 scopus 로고    scopus 로고
    • Selective identification of threonine, valine, and isoleucine sequential connectivities with a TVI-CBCACONH experiment
    • Dötsch V, Oswald RE, Wagner G (1996b) Selective identification of threonine, valine, and isoleucine sequential connectivities with a TVI-CBCACONH experiment. J Magn Reson B 110:04-308
    • (1996) J Magn Reson B , vol.110 , pp. 04-308
    • Dötsch, V.1    Oswald, R.E.2    Wagner, G.3
  • 8
    • 0030192067 scopus 로고    scopus 로고
    • Amino-acid-type identification for deuterated proteins with a β-carbon-edited HNCOCACB experiment
    • Dötsch V, Matsuo H, Wagner G (1996c) Amino-acid-type identification for deuterated proteins with a b-carbon-edited HNCOCACB experiment. J Magn Reson B 112:95-100 (Pubitemid 126758711)
    • (1996) Journal of Magnetic Resonance - Series B , vol.112 , Issue.1 , pp. 95-100
    • Dotsch, V.1    Matsuo, H.2    Wagner, G.3
  • 9
    • 0030184317 scopus 로고    scopus 로고
    • Phase labeling of C-H and C-C spin-system topologies: Application in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments for determining backbone resonance assignments in proteins
    • Feng W, Rios CB, Montelione GT (1996) Phase labeling of C-H and C-C spin-system topologies: Application in PFG-HACANH and PFG-HACA(CO)NH triple-resonance experiments for determining backbone resonance assignments in proteins. J Biomol NMR 8:98-104 (Pubitemid 126707861)
    • (1996) Journal of Biomolecular NMR , vol.8 , Issue.1 , pp. 98-104
    • Feng, W.1    Rios, C.B.2    Montelione, G.T.3
  • 10
    • 84855716726 scopus 로고    scopus 로고
    • IHADAMAC: A complementary tool for sequential resonance assignment of globular and highly disordered proteins
    • Feuerstein S, Plevin MJ, Willbold D, Brutscher B (2012) iHADAMAC: A complementary tool for sequential resonance assignment of globular and highly disordered proteins. J Magn Reson 214:329-334
    • (2012) J Magn Reson , vol.214 , pp. 329-334
    • Feuerstein, S.1    Plevin, M.J.2    Willbold, D.3    Brutscher, B.4
  • 11
    • 0027569483 scopus 로고
    • Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins
    • Grzesiek S, Bax A (1993) Amino acid type determination in the sequential assignment procedure of uniformly 13C/15N-enriched proteins. J Biomol NMR 3:185-204
    • (1993) J Biomol NMR , vol.3 , pp. 185-204
    • Grzesiek, S.1    Bax, A.2
  • 12
    • 34249765651 scopus 로고
    • NMRView: A computer program for the visualization and analysis of NMR data
    • Johnson BA, Blevins RA (1994) NMRView: A computer program for the visualization and analysis of NMR data. J Biomol NMR 4:603-614
    • (1994) J Biomol NMR , vol.4 , pp. 603-614
    • Johnson, B.A.1    Blevins, R.A.2
  • 13
    • 79951554115 scopus 로고    scopus 로고
    • Amino acid selective unlabeling for sequence specific resonance assignments in proteins
    • Krishnarjuna B, Jaipuria G, Thakur S, D'Silva P, Atreya HS (2011) Amino acid selective unlabeling for sequence specific resonance assignments in proteins. J Biomol NMR 49:39-51
    • (2011) J Biomol NMR , vol.49 , pp. 39-51
    • Krishnarjuna, B.1    Jaipuria, G.2    Thakur, S.3    D'Silva, P.4    Atreya, H.S.5
  • 14
    • 0029196090 scopus 로고
    • A novel method for selective isotope labeling of bacterially expressed proteins
    • Lee KM, Androphy EJ, Baleja JD (1995) A novel method for selective isotope labeling of bacterially expressed proteins. J Biomol NMR 5:93-96
    • (1995) J Biomol NMR , vol.5 , pp. 93-96
    • Lee, K.M.1    Androphy, E.J.2    Baleja, J.D.3
  • 15
    • 67349271755 scopus 로고    scopus 로고
    • Highly automated protein backbone resonance assignment within a few hours: The BATCH strategy and software package
    • Lescop E, Brutscher B (2009) Highly automated protein backbone resonance assignment within a few hours: The BATCH strategy and software package. J Biomol NMR 44:43-57
    • (2009) J Biomol NMR , vol.44 , pp. 43-57
    • Lescop, E.1    Brutscher, B.2
  • 16
    • 42149093129 scopus 로고    scopus 로고
    • Hadamard amino-acid-type edited NMR experiment for fast protein resonance assignment
    • DOI 10.1021/ja800914h
    • Lescop E, Rasia R, Brutscher B (2008) Hadamard amino-acid-type edited NMR experiment for fast protein resonance assignment. J Am Chem Soc 130:5014-5015 (Pubitemid 351537043)
    • (2008) Journal of the American Chemical Society , vol.130 , Issue.15 , pp. 5014-5015
    • Lescop, E.1    Rasia, R.2    Brutscher, B.3
  • 17
    • 0033783933 scopus 로고    scopus 로고
    • Heteronuclear relayed E.COSY revisited: Determination of 3 J(Ha, Cc) couplings in Asx and aromatic residues in proteins
    • Löhr F, Pérez C, Köhler R, Rüterjans H, Schmidt JM (2000) Heteronuclear relayed E.COSY revisited: Determination of 3 J(Ha, Cc) couplings in Asx and aromatic residues in proteins. J Biomol NMR 18:13-22
    • (2000) J Biomol NMR , vol.18 , pp. 13-22
    • Löhr, F.1    Pérez, C.2    Köhler, R.3    Rüterjans, H.4    Schmidt, J.M.5
  • 18
    • 0025193295 scopus 로고
    • Biosynthetic incorporation of 15N and 13C for assignment and interpretation of nuclear magnetic resonance spectra of proteins
    • McIntosh LP, Dahlquist FW (1990) Biosynthetic incorporation of 15N and 13C for assignment and interpretation of nuclear magnetic resonance spectra of proteins. Q Rev Biophys 23:1-38
    • (1990) Q Rev Biophys , vol.23 , pp. 1-38
    • McIntosh, L.P.1    Dahlquist, F.W.2
  • 19
    • 0024836418 scopus 로고
    • Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance
    • DOI 10.1016/0076-6879(89)77005-1
    • Muchmore DD, McIntosh LP, Russell CB, Anderson DE, Dahlquist FW (1989) Expression and nitrogen-15 labeling of proteins for proton and nitrogen-15 nuclear magnetic resonance. Methods Enzymol 177:44-73 (Pubitemid 20041570)
    • (1989) Methods in Enzymology , vol.177 , pp. 44-73
    • Muchmore, D.C.1    McIntosh, L.P.2    Russell, C.B.3    Anderson, D.E.4    Dahlquist, F.W.5
  • 20
    • 0002291945 scopus 로고    scopus 로고
    • 13C and fractionally deuterated proteins that immediately follow methyl-containing amino acids
    • Muhandiram DR, Johnson PE, Yang D, Zhang O, McIntosh LP, Kay LE (1997) Specific 15N, NH correlations for residues in 15N, 13C and fractionally deuterated proteins that immediately follow methyl-containing amino acids. J Biomol NMR 10:283-288 (Pubitemid 127504675)
    • (1997) Journal of Biomolecular NMR , vol.10 , Issue.3 , pp. 283-288
    • Muhandiram, D.R.1    Johnson, P.E.2    Yang, D.3    Zhang, O.4    McIntosh, L.P.5    Kay, L.E.6
  • 21
    • 0037130659 scopus 로고    scopus 로고
    • A novel approach for the sequential backbone assignment of larger proteins: Selective intra-HNCA and DQ-HNCA
    • DOI 10.1021/ja025865m
    • Nietlispach D, Ito Y, Laue E (2002) A novel approach for the sequential backbone assignment of larger proteins: Selective intra-HNCA and DQ-HNCA. J Am Chem Soc 124:11199-11207 (Pubitemid 35025679)
    • (2002) Journal of the American Chemical Society , vol.124 , Issue.37 , pp. 11199-11207
    • Nietlispach, D.1    Ito, Y.2    Laue, E.D.3
  • 22
    • 50249161939 scopus 로고    scopus 로고
    • Stable isotope labeling methods for protein NMR
    • Ohki S, Kainosho M (2008) Stable isotope labeling methods for protein NMR. Prog Nucl Magn Reson Spectrosc 53:208-226
    • (2008) Prog Nucl Magn Reson Spectrosc , vol.53 , pp. 208-226
    • Ohki, S.1    Kainosho, M.2
  • 23
    • 55049089059 scopus 로고    scopus 로고
    • Amino acid type identification in NMR spectra of proteins via beta-and gamma-carbon edited experiments
    • Pantoja-Uceda D, Santoro J (2008) Amino acid type identification in NMR spectra of proteins via beta-and gamma-carbon edited experiments. J Magn Reson 195:187-195
    • (2008) J Magn Reson , vol.195 , pp. 187-195
    • Pantoja-Uceda, D.1    Santoro, J.2
  • 24
    • 0030256487 scopus 로고    scopus 로고
    • Phase labeling of C-H and C-C spin-system topologies: Application in constant-time PFG-CBCA(CO)NH experiments for discriminating amino acid spin-system types
    • Rios CB, Feng W, Tashiro M, Shang Z, Montelione GT (1996) Phase labeling of C-H and C-C spin-system topologies: Application in constant-time PFG-CBCA(CO)NH experiments for discriminating amino acid spin-system types. J Biomol NMR 8:345-350 (Pubitemid 126707872)
    • (1996) Journal of Biomolecular NMR , vol.8 , Issue.3 , pp. 345-350
    • Rios, C.B.1    Feng, W.2    Tashiro, M.3    Shang, Z.4    Montelione, G.T.5
  • 26
    • 0035744056 scopus 로고    scopus 로고
    • MUSIC, selective pulses, and tuned delays: Amino acid type-selective H-1-N-15 correlations, II
    • Schubert M, Oschkinat H, Schmieder P (2001a) MUSIC, selective pulses, and tuned delays: Amino acid type-selective H-1-N-15 correlations, II. J Magn Reson 148:61-72
    • (2001) J Magn Reson , vol.148 , pp. 61-72
    • Schubert, M.1    Oschkinat, H.2    Schmieder, P.3
  • 27
    • 0035742302 scopus 로고    scopus 로고
    • MUSIC and aromatic residues: Amino acid type-selective H-1-N-15 correlations, III
    • Schubert M, Oschkinat H, Schmieder P (2001b) MUSIC and aromatic residues: Amino acid type-selective H-1-N-15 correlations, III. J Magn Reson 153:186-192
    • (2001) J Magn Reson , vol.153 , pp. 186-192
    • Schubert, M.1    Oschkinat, H.2    Schmieder, P.3
  • 28
    • 0034852448 scopus 로고    scopus 로고
    • 15N- correlations for Arg and Lys
    • DOI 10.1023/A:1011206131623
    • Schubert M, Oschkinat H, Schmieder P (2001c) Amino acid typeselective backbone 1H-15 N-correlations for Arg and Lys. J Biomol NMR 20:379-384 (Pubitemid 32825732)
    • (2001) Journal of Biomolecular NMR , vol.20 , Issue.4 , pp. 379-384
    • Schubert, M.1    Oschkinat, H.2    Schmieder, P.3
  • 29
    • 15844367467 scopus 로고    scopus 로고
    • A modified strategy for sequence specific assignment of protein NMR spectra based on amino acid type selective experiments
    • DOI 10.1007/s10858-004-8263-z
    • Schubert M, Labudde D, Leitner D, Oschkinat H, Schmieder P (2005) A modified strategy for sequence specific assignment of protein NMR spectra based on amino acid type selective experiments. J Biomol NMR 31:115-127 (Pubitemid 40425219)
    • (2005) Journal of Biomolecular NMR , vol.31 , Issue.2 , pp. 115-127
    • Schubert, M.1    Labudde, D.2    Leitner, D.3    Oschkinat, H.4    Schmieder, P.5
  • 30
    • 51749087029 scopus 로고    scopus 로고
    • A simple method for amino acid selective isotope labeling of recombinant proteins in E. coli
    • Tong KI, Yamamoto M, Tanaka T (2008) A simple method for amino acid selective isotope labeling of recombinant proteins in E. coli. J Biomol NMR 42:59-67
    • (2008) J Biomol NMR , vol.42 , pp. 59-67
    • Tong, K.I.1    Yamamoto, M.2    Tanaka, T.3
  • 31
    • 0242407224 scopus 로고    scopus 로고
    • Ile, Leu, and Val Methyl Assignments of the 723-Residue Malate Synthase G Using a New Labeling Strategy and Novel NMR Methods
    • DOI 10.1021/ja030345s
    • Tugarinov V, Kay LE (2003) Ile, Leu, and Val methyl assignments of the 723-residue malate synthase G using a new labeling strategy and novel NMR methods. J Am Chem Soc 125:13868-13878 (Pubitemid 37386061)
    • (2003) Journal of the American Chemical Society , vol.125 , Issue.45 , pp. 13868-13878
    • Tugarinov, V.1    Kay, L.E.2
  • 32
    • 43949167657 scopus 로고
    • HNCACB a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the alpha-and beta-carbon resonances in proteins
    • Wittekind M, Müller L (1993) HNCACB a high-sensitivity 3D NMR experiment to correlate amide-proton and nitrogen resonances with the alpha-and beta-carbon resonances in proteins. J Magn Reson B 101:201-205
    • (1993) J Magn Reson B , vol.101 , pp. 201-205
    • Wittekind, M.1    Müller, L.2
  • 33
    • 0028578764 scopus 로고
    • A suite of triple resonance NMR experiments for the backbone assignment of 15N, 13C, 2H labeled proteins with high sensitivity
    • Yamazaki T, Lee W, Arrowsmith CH, Muhandiram DR, Kay LE (1994) A suite of triple resonance NMR experiments for the backbone assignment of 15N, 13C, 2H labeled proteins with high sensitivity. J Am Chem Soc 116:11655-11666
    • (1994) J Am Chem Soc , vol.116 , pp. 11655-11666
    • Yamazaki, T.1    Lee, W.2    Arrowsmith, C.H.3    Muhandiram, D.R.4    Kay, L.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.