Base-stacking-determined fluorescence emission of DNA abasic site-templated silver nanoclusters

Langmuir

Volumn 28, Issue 43, 2012, Pages 15313-15322

  Ma, Kun ^a   Shao, Yong ^a   Cui, Qinghua ^a   Wu, Fei ^a   Xu, Shujuan ^a   Liu, Guiying ^a  

^a ZHEJIANG NORMAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AP-SITES; BASE STACKING; ELECTRONIC DIPOLE MOMENTS; EMISSION SHIFTS; EXCITED-STATE LIFETIME; FLUORESCENCE EMISSION; GROWTH SITES; GUANINE; HIGH BRIGHTNESS; NEAR-INFRARED EMISSIONS; PHOTO-STABILITY; PLOT ANALYSIS; RED-SHIFTED; SILVER NANOCLUSTERS;

DNA; DNA SEQUENCES; EXCITED STATES; FLUORESCENCE; NANOCLUSTERS; OPTICAL PROPERTIES; POSITIVE IONS;

SILVER;

DNA; METAL NANOPARTICLE; SILVER;

ARTICLE; BASE PAIRING; BINDING SITE; CHEMISTRY; GENETICS; NUCLEOTIDE SEQUENCE; PARTICLE SIZE; SPECTROFLUOROMETRY;

BASE PAIRING; BASE SEQUENCE; BINDING SITES; DNA; METAL NANOPARTICLES; PARTICLE SIZE; SILVER; SPECTROMETRY, FLUORESCENCE;

EID: 84868135419     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la301957m     Document Type: Article

References (74)

1. Díez, I.; Ras, R. H. A. Fluorescent Silver Nanoclusters Nanoscale 2011, 3, 1963-1970
2. Shang, L.; Dong, S. J.; Nienhaus, G. U. Ultra-Small Fluorescent Metal Nanoclusters: Synthesis and Biological Applications Nano Today 2011, 6, 401-418
3. Xu, H. G.; Suslick, K. S. Water-Soluble Fluorescent Silver Nanoclusters Adv. Mater. 2010, 22, 1078-1082
4. Choi, S.; Dickson, R. M.; Yu, J. Developing Luminescent Silver Nanodots for Biological Applications Chem. Soc. Rev. 2012, 41, 1867-1891
5. Shang, L.; Dong, S. J. Silver Nanocluster-Based Fluorescent Sensors for Sensitive Detection of Cu (II) J. Mater. Chem. 2008, 18, 4636-4640
6. Adhikari, B.; Banerjee, A. Facile Synthesis of Water-Soluble Fluorescent Silver Nanoclusters and Hg(II) Sensing Chem. Mater. 2010, 22, 4364-4371
7. 3+ Sensing Chem. Commun. 2011, 47, 2661-2663
8. Lei, Y.; Mehmood, F.; Lee, S.; Greeley, J.; Lee, B.; Seifert, S.; Winans, R. E.; Elam, J. W.; Meyer, R. J.; Redfern, P. C.; Teschner, D.; Schlögl, R.; Pellin, M. J.; Curtiss, L. A.; Vajda, S. Increased Silver Activity for Direct Propylene Epoxidation via Subnanometer Size Effects Science 2010, 328, 224-228
9. Esumi, K.; Isono, R.; Yoshimura, T. Preparation of PAMAM- and PPI-Metal (Silver, Platinum, and Palladium) Nanocomposites and Their Catalytic Activities for Reduction of 4-Nitrophenol Langmuir 2004, 20, 237-243
10. Sun, L.; Sun, Y.; Xu, F.; Zhang, Y.; Yang, T.; Guo, C.; Liu, Z.; Li, Z. Atomic Force Microscopy and Surface-Enhanced Raman Scattering Detection of DNA Based on DNA-Nanoparticle Complexes Nanotechnology 2009, 20, 125502
11. Murugadoss, A.; Chattopadhyay, A. A 'Green' Chitosan-Silver Nanoparticle Composite as a Heterogeneous as Well as Micro-Heterogeneous Catalyst Nanotechnology 2008, 19, 015603
12. 2 J. Mater. Chem. 2009, 19, 8223-8231
13. Zheng, J.; Dickson, R. M. Individual Water-Soluble Dendrimer-Encapsulated Silver Nanodot Fluorescence J. Am. Chem. Soc. 2002, 124, 13982-13983
14. Zhang, J. G.; Xu, S. Q.; Kumacheva, E. Photogeneration of Fluorescent Sliver Nanocluster in Polymer Microgels Adv. Mater. 2005, 17, 2336-2340
15. Shang, L.; Dong, S. J. Facile Preparation of Water-Soluble Fluorescent Silver Nanoclusters Using a Polyelectrolyte Template Chem. Commun. 2008, 44, 1088-1090
16. Sun, S. K.; Wang, H. F.; Yan, X. P. A Sensitive and Selective Resonance Light Scattering Bioassay for Homocysteine in Biological Fluids Based on Target-Involved Assembly of Polyethyleneimine-Capped Ag-Nanoclusters Chem. Commun. 2011, 47, 3817-3819
17. Slocik, J. M.; Moore, J. T.; Wright, D. W. Monoclonal Antibody Recognition of Histidine-Rich Peptide Encapsulated Nanoclusters Nano Lett. 2002, 2, 169-173
18. Adhikari, B.; Banerjee, A. Short-Peptide-Based Hydrogel: A Template for the in Situ Synthesis of Fluorescent Silver Nanoclusters by Using Sunlight Chem.-Eur. J. 2010, 16, 13698-13705
19. Yu, J. H.; Patel, S. A.; Dickson, R. M. In Vitro and Intracellular Production of Peptide-Encapsulated Fluorescent Silver Nanoclusters Angew. Chem., Int. Ed. 2007, 46, 2028-2030
20. Braun, N.; Meining, W.; Hars, U.; Fischer, M.; Ladenstein, R.; Huber, R.; Bacher, A.; Weinkauf, S.; Bachmann, L. Formation of Metal Nanoclusters on Specific Surface Sites of Protein Molecules J. Mol. Biol. 2002, 321, 341-353
21. Narayanan, S. S.; Pal, S. K. Structural and Functional Characterization of Luminescent Silver-Protein Nanobioconjugates J. Phys. Chem. C 2008, 112, 4874-4879
22. Guo, C. L.; Irudayaraj, J. Fluorescent Ag Clusters via a Protein-Directed Approach as a Hg(II) Ion Sensor Anal. Chem. 2011, 83, 2883-2889
23. Petty, J. T.; Zhang, J.; Hud, N. V.; Dickson, R. M. DNA-Templated Ag Nanocluster Formation J. Am. Chem, Soc. 2004, 126, 5207-5212
24. Ritchie, C. M.; Johnsen, K. R.; Kiser, J. R.; Antoku, Y.; Dickson, R. M.; Petty, J. T. Ag Nanocluster Formation Using a Cytosine Oligonucleotide Template J. Phys. Chem. C 2007, 111, 175-181
25. Pal, S.; Varghese, R.; Deng, Z. T.; Zhao, Z.; Kumar, A.; Yan, H.; Liu, Y. Site-Specific Synthesis and in Situ Immobilization of Fluorescent Silver Nanoclusters on DNA Nanoscaffolds by Use of the Tollens Reaction Angew. Chem., Int. Ed. 2011, 50, 4176-4179
26. Richards, C. I.; Choi, S.; Hsiang, J. C.; Antoku, Y.; Vosch, T.; Bongiorno, A.; Tzeng, Y. L.; Dickson, R. M. Oligonucleotide-Stabilized Ag Nanocluster Fluorophores J. Am. Chem. Soc. 2008, 130, 5038-5039
27. Sengupta, B.; Ritchie, C. M.; Buckman, J. G.; Johnsen, K. R.; Goodwin, P. M.; Petty, J. T. Base-Directed Formation of Fluorescent Silver Clusters J. Phys. Chem. C 2008, 112, 18776-18782
28. Antoku, Y. Fuorescent Polycytosine-Encapsulated Silver Nanoclusters. Ph.D. Thesis, Georgia Institue of Technology, Atlanta, GA, 2007.
29. Yeh, H. C.; Sharma, J.; Han, J. J.; Martinez, J. S.; Werner, J. H. A DNA-Silver Nanocluster Probe that Fluoresces upon Hybridization Nano Lett. 2010, 10, 3106-3110
30. Sengupta, B.; Springer, K.; Buckman, J. G.; Story, S. P.; Abe, O. H.; Hasan, Z. W.; Prudowsky, Z. D.; Rudisill, S. E.; Degtyareva, N. N.; Petty, J. T. DNA Templates for Fluorescent Silver Clusters and I-Motif Folding J. Phys. Chem. C 2009, 113, 19518-19524
31. Sharma, J.; Yeh, H. C.; Yoo, H.; Werner, J. H.; Martinez, J. S. A Complementary Palette of Fluorescent Silver Nanoclusters Chem. Commun. 2010, 46, 3280-3282
32. Lan, G. Y.; Huang, C. C.; Chang, H. T. Silver Nanoclusters as Fluorescent Probes for Selective and Sensitive Detection of Copper Ions Chem. Commun. 2010, 46, 1257-1259
33. Su, Y. T.; Lan, G. Y.; Chen, W. Y.; Chang, H. T. Detection of Copper Ions through Recovery of the Fluorescence of DNA-Templated Copper/Silver Nanoclusters in the Presence of Mercaptopropionic Acid Anal. Chem. 2010, 82, 8566-8572
34. Choi, S.; Yu, J.; Patel, S. A.; Tzeng, Y. L.; Dickson, R. M. Tailoring Silver Nanodots for Intracellular Staining Photochem. Photobiol. Sci. 2011, 10, 109-115
35. Li, T.; Zhang, L. B.; Ai, J.; Dong, S. J.; Wang, E. K. Ion-Tuned DNA/Ag Fluorescent Nanoclusters as Versatile Logic Device ACS Nano 2011, 5, 6334-6338
36. Driehorst, T.; O'Neill, P.; Goodwin, P. M.; Pennathur, S.; Fygenson, D. K. Distinct Conformations of DNA-Stabilized Fluorescent Silver Nanoclusters Revealed by Electrophoretic Mobility and Diffusivity Measurements Langmuir 2011, 27, 8923-8933
37. Yu, J.; Choi, S.; Dickson, R. M. Shuttle-Based Fluorogenic Silver-Cluster Biolabels Angew. Chem., Int. Ed. 2009, 48, 318-320
38. n:DNA J. Phys. Chem. C 2009, 113, 4229-4233
39. Huang, Z. Z.; Pu, F.; Lin, Y. H.; Ren, J. S.; Qu, X. G. Modulating DNA-Templated Silver Nanoclusters for Fluorescence Turn-on Detection of Thiol Compounds Chem. Commun. 2011, 47, 3487-3489
40. Han, B. Y.; Wang, E. K. Oligonucleotide-Stabilized Fluorescent Silver Nanoclusters for Sensitive Detection of Biothiols in Biological Fluids Biosens. Bioelectron. 2011, 26, 2585-2589
41. Lan, G. Y.; Chen, W. Y.; Chang, H. T. One-Pot Synthesis of Fluorescent Oligonucleotide Ag Nanoclusters for Specific and Sensitive Detection of DNA Biosens. Bioelectron. 2011, 26, 2431-2435
42. Yu, J. H.; Choi, S.; Richards, C. I.; Antoku, Y.; Dickson, R. M. Live Cell Surface Labeling with Fluorescent Ag Nanocluster Conjugates Photochem. Photobiol. 2008, 84, 1435-1439
43. 2+ Ion Chem. Commun. 2009, 45, 3395-3397
44. Gwinn, E. G.; O'Neill, P.; Guerrero, A. J.; Bouwmeester, D.; Fygenson, D. K. Sequence-Dependent Fluorescence of DNA-Hosted Silver Nanoclusters Adv. Mater. 2008, 20, 279-283
45. Fu, Y.; Zhang, J. L.; Chen, X. F.; Huang, T. T.; Duan, X. L.; Li, W.; Wang, J. K. Silver Nanomaterials Regulated by Structural Competition of G-/C-Rich Oligonucleotides J. Phys. Chem. C 2011, 115, 10370-10379
46. Schultza, D.; Gwinn, E. Stabilization of Fluorescent Silver Clusters by RNA Homopolymers and Their DNA Analogs: C, G versus A, T(U) Dichotomy Chem. Commun. 2011, 47, 4715-4717
47. Vosch, T.; Antoku, Y.; Hsiang, J. C.; Richards, C. I.; Gonzalez, J. I.; Dickson, R. M. Strongly Emissive Individual DNA-Encapsulated Ag Nanoclusters as Single-Molecule Fluorophores Proc. Natl. Acad. Sci. U.S.A. 2007, 104, 12616-12621
48. Sharma, J.; Yeh, H. C.; Yoo, H.; Werner, J. H.; Martinez, J. S. Silver Nanocluster Aptamers: in Situ Generation of Intrinsically Fluorescent Recognition Ligands for Protein Detection Chem. Commun. 2011, 47, 2294-2296
49. Patel, S. A.; Richards, C. I.; Hsiang, J. C.; Dickson, R. M. Water-Soluble Ag Nanoclusters Exhibit Strong Two-Photon-Induced Fluorescence J. Am. Chem. Soc. 2008, 130, 11602-11603
50. Patel, S. A.; Cozzuol, M.; Hales, J. M.; Richards, C. I.; Sartin, M.; Hsiang, J. C.; Vosch, T.; Perry, J. W.; Dickson, R. M. Electron Transfer-Induced Blinking in Ag Nanodot Fluorescence J. Phys. Chem. C 2009, 113, 20264-20270
51. Antoku, Y.; Hotta, J. I.; Mizuno, H.; Dickson, R. M.; Hofkens, J.; Vosch, T. Transfection of Living HeLa Cells with Fluorescent Poly-Cytosine Encapsulated Ag Nanoclusters Photochem. Photobiol. Sci. 2010, 9, 716-721
52. Guo, W. W.; Yuan, J. P.; Dong, Q. Z.; Wang, E. K. Highly Sequence-Dependent Formation of Fluorescent Silver Nanoclusters in Hybridized DNA Duplexes for Single Nucleotide Mutation Identification J. Am. Chem. Soc. 2010, 132, 932-934
53. Huang, Z. Z.; Pu, F.; Hu, D.; Wang, C. Y.; Ren, J. S.; Qu, X. G. Site-Specific DNA-Programmed Growth of Fluorescent and Functional Silver Nanoclusters Chem.-Eur. J. 2011, 17, 3774-3780
54. Ma, K.; Cui, Q. H.; Liu, G. Y.; Wu, F.; Xu, S. J.; Shao, Y. DNA Abasic Site-Directed Formation of Fluorescent Silver Nanoclusters for Selective Nucleobase Recognition Nanotechnology 2011, 22, 305502
55. Berti, L.; Burley, G. A. Nucleic Acid and Nucleotide-Mediated Synthesis of Inorganic Nanoparticles Nat. Nanotechnol. 2008, 3, 81-87
56. Arakawa, H.; Neault, J. F.; Tajmir-Riahi, H. A. Silver(I) Complexes with DNA and RNA Studied by Fourier Transform Infrared Spectroscopy and Capillary Electrophoresis Biophys. J. 2001, 81, 1580-1587
57. Neidig, M. L.; Sharma, J.; Yeh, H. C.; Martinez, J. S.; Conradson, S. D.; Shreve, A. P. Ag K-Edge EXAFS Analysis of DNA-Templated Fluorescent Silver Nanoclusters: Insight into the Structural Origins of Emission Tuning by DNA Sequence Variations J. Am. Chem. Soc. 2011, 133, 11837-11839
58. Ma, K.; Cui, Q. H.; Shao, Y.; Wu, F.; Xu, S. J.; Liu, G. Y. Emission Modulation of DNA-Templated Fluorescent Silver Nanoclusters by Divalent Magnesium Ion J. Nanosci. Nanotechnol. 2012, 12, 861-869
59. Burley, G. A.; Gierlich, J.; Mofid, M. R.; Nir, H.; Tal, S.; Eichen, Y.; Carell, T. Directed DNA Metallization J. Am. Chem. Soc. 2006, 128, 1398-1399
60. Wirges, C. T.; Timper, J.; Fischler, M.; Sologubenko, A. S.; Mayer, J.; Simon, U.; Carell, T. Controlled Nucleation of DNA Metallization Angew. Chem. Int. Edn 2009, 48, 219-223
61. Puglisi, J. D.; Tinoco, I., Jr. Absorbance Melting Curves of RNA Methods Enzymol. 1989, 180, 304-325
62. +-Nucleobase Interactions with Isothermal Titration Calorimetry (ITC): Towards Patterned DNA Metallization Nanoscale 2009, 1, 122-127
63. Henglein, A. Physicochemical Properties of Small Metal Particles in Solution: "Microelectrode" Reactions, Chemisorption, Composite Metal Particles, and the Atom-to-Metal Transition J. Phys. Chem. 1993, 97, 5457-5471
64. 3 Species in the Course of Condensation of Ag Atoms with Ar ChemPhysChem 2004, 5, 403-407
65. Maretti, L.; Billone, P. S.; Liu, Y.; Scaiano, J. C. Facile Photochemical Synthesis and Characterization of Highly Fluorescent Silver Nanoparticles J. Am. Chem. Soc. 2009, 131, 13972-13980
66. Stamplecoskie, K. G.; Scaiano, J. C. Kinetics of the Formation of Silver Dimers: Early Stages in the Formation of Silver Nanoparticles J. Am. Chem. Soc. 2011, 133, 3913-3920
67. Soto-Verdugo, V.; Metiu, H.; Gwinn, E. The Properties of Small Ag Clusters Bound to DNA Bases J. Chem. Phys. 2010, 132, 195102
68. De Heer, W. A. The Physics of Simple Metal Clusters: Experimental Aspects and Simple Models Rev. Mod. Phys. 1993, 65, 611-676
69. Rabin, I.; Schulze, W.; Ertl, G. Light Emission during the Agglomeration of Silver Clusters in Noble Gas Matrices J. Chem. Phys. 1998, 108, 5137-5142
70. Sugiyama, H.; Saito, I. Theoretical Studies of GC-Specific Photocleavage of DNA via Electron Transfer: Significant Lowering of Ionization Potential and 5′-Localization of HOMO of Stacked GG Bases in B-Form DNA J. Am. Chem. Soc. 1996, 118, 7063-7068
71. Saito, I.; Nakamura, T.; Nakatani, K.; Yoshioka, Y.; Yamaguchi, K.; Sugiyama, H. Mapping of the Hot Spots for DNA Damage by One-Electron Oxidation: Efficacy of GG Doublets and GGG Triplets as a Trap in Long-Range Hole Migration J. Am. Chem. Soc. 1998, 120, 12686-12687
72. Senthilkumar, K.; Grozema, F. C.; Fonseca Guerra, C.; Bickelhaupt, F. M.; Siebbeles, L. D. A. Mapping the Sites for Selective Oxidation of Guanines in DNA J. Am. Chem. Soc. 2003, 125, 13658-13659
73. Voityuk, A. A.; Jortner, J.; Bixon, M.; Rosch, N. Energetics of Hole Transfer in DNA Chem. Phys. Lett. 2000, 324, 430-434
74. O'Neill, P. R.; Gwinn, E. G.; Fygenson, D. K. UV Excitation of DNA Stabilized Ag Cluster Fluorescence via the DNA Bases J. Phys. Chem. C 2011, 115, 24061-24066