Complete mitochondrial and plastid genomes of the green microalga Trebouxiophyceae sp. strain MX-AZ01 isolated from a highly acidic geothermal lake

Eukaryotic Cell

Volumn 11, Issue 11, 2012, Pages 1417-1418

  Servín Garcidueñas, Luis E ^a   Martínez Romero, Esperanza ^a  

^a INSTITUTO DE CIENCIAS FÍSICAS   (Mexico)

Author keywords

[No Author keywords available]

Indexed keywords

ACID; HEAVY METAL; PLANT DNA;

ARTICLE; CHEMISTRY; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; GENOME SIZE; GREEN ALGA; LAKE; MEXICO; MITOCHONDRIAL GENOME; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PH; PLANT GENOME; PLASTID GENOME; SPECIES DIFFERENCE; THERMAL SPRING;

ACIDS; BASE COMPOSITION; BASE SEQUENCE; CHLOROPHYTA; DNA, PLANT; EVOLUTION, MOLECULAR; GENOME SIZE; GENOME, MITOCHONDRIAL; GENOME, PLANT; GENOME, PLASTID; HOT SPRINGS; HYDROGEN-ION CONCENTRATION; LAKES; METALS, HEAVY; MEXICO; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY;

CHLOROPHYTA; EUKARYOTA; TREBOUXIOPHYCEAE;

EID: 84868128239     PISSN: 15359778     EISSN: None     Source Type: Journal    
DOI: 10.1128/EC.00244-12     Document Type: Article

References (9)

1. Besemer J, Borodovsky M. 1999. Heuristic approach to deriving models for gene finding. Nucleic Acids Res. 27:3911-3920.
2. Blanc G, et al. 2012. The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation. Genome Biol. 13: R39.
3. Darling AC, Mau B, Blattner FR, Perna NT. 2004. Mauve: multiple alignment of conserved genomic sequence with rearrangements. Genome Res. 14:1394-1403.
4. Lagesen K, et al. 2007. RNAmmer: consistent and rapid annotation of ribosomal RNA genes. Nucleic Acids Res. 35:3100-3108.
5. Leliaert F, et al. 2012. Phylogeny and molecular evolution of the green algae. Crit. Rev. Plant Sci. 31:1-46.
6. Li H, Ruan J, Durbin R. 2008. Mapping short DNA sequencing reads and calling variants using mapping quality scores. Genome Res. 18:1851-1858.
7. Lowe TM, Eddy SR. 1997. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25: 955-964.
8. Smith DR, et al. 2011. The GC-rich mitochondrial and plastid genomes of the green alga Coccomyxa give insight into the evolution of organelle DNA nucleotide landscape. PLoS One 6:e23624. doi:10.1371/journal. pone.0023624.
9. Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829.