-
1
-
-
84868123489
-
Microsporidia- highly reduced and derived relatives of Fungi
-
In: Poeggeler S, Woestemeyer J, editors, Heidleberg: Springer
-
Williams BA, Keeling PJ (2011) Microsporidia- highly reduced and derived relatives of Fungi. In: Poeggeler S, Woestemeyer J, editors. Evolution of Fungi and Fungal-like Organisms. Heidleberg: Springer. pp. 25-36.
-
(2011)
Evolution of Fungi and Fungal-like Organisms
, pp. 25-36
-
-
Williams, B.A.1
Keeling, P.J.2
-
3
-
-
67650930861
-
Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees
-
Cornman RS, Chen YP, Schatz MC, Street C, Zhao Y, et al. (2009) Genomic analyses of the microsporidian Nosema ceranae, an emergent pathogen of honey bees. PLoS Pathog 5: e1000466.
-
(2009)
PLoS Pathog
, vol.5
-
-
Cornman, R.S.1
Chen, Y.P.2
Schatz, M.C.3
Street, C.4
Zhao, Y.5
-
4
-
-
80052511877
-
Microsporidiosis: not just in AIDS patients
-
Didier ES, Weiss LM, (2011) Microsporidiosis: not just in AIDS patients. Curr Opin Infect Dis 24: 490-495.
-
(2011)
Curr Opin Infect Dis
, vol.24
, pp. 490-495
-
-
Didier, E.S.1
Weiss, L.M.2
-
5
-
-
33645456207
-
Eukaryotic evolution, changes and challenges
-
Embley TM, Martin W, (2006) Eukaryotic evolution, changes and challenges. Nature 440: 623-630.
-
(2006)
Nature
, vol.440
, pp. 623-630
-
-
Embley, T.M.1
Martin, W.2
-
6
-
-
0035936144
-
Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi
-
Katinka MD, Duprat S, Cornillot E, Metenier G, Thomarat F, et al. (2001) Genome sequence and gene compaction of the eukaryote parasite Encephalitozoon cuniculi. Nature 414: 450-453.
-
(2001)
Nature
, vol.414
, pp. 450-453
-
-
Katinka, M.D.1
Duprat, S.2
Cornillot, E.3
Metenier, G.4
Thomarat, F.5
-
7
-
-
41049110585
-
Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi
-
Corradi N, Gangaeva A, Keeling PJ, (2008) Comparative profiling of overlapping transcription in the compacted genomes of microsporidia Antonospora locustae and Encephalitozoon cuniculi. Genomics 91: 388-393.
-
(2008)
Genomics
, vol.91
, pp. 388-393
-
-
Corradi, N.1
Gangaeva, A.2
Keeling, P.J.3
-
8
-
-
23344449276
-
A high frequency of overlapping gene expression in compacted eukaryotic genomes
-
Williams BA, Slamovits CH, Patron NJ, Fast NM, Keeling PJ, (2005) A high frequency of overlapping gene expression in compacted eukaryotic genomes. Proc Natl Acad Sci U S A 102: 10936-10941.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 10936-10941
-
-
Williams, B.A.1
Slamovits, C.H.2
Patron, N.J.3
Fast, N.M.4
Keeling, P.J.5
-
9
-
-
84856489199
-
The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis
-
Corradi N, Pombert JF, Farinelli L, Didier ES, Keeling PJ, (2010) The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Nat Commun 1: 77.
-
(2010)
Nat Commun
, vol.1
, pp. 77
-
-
Corradi, N.1
Pombert, J.F.2
Farinelli, L.3
Didier, E.S.4
Keeling, P.J.5
-
10
-
-
75349085888
-
Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions
-
Corradi N, Haag KL, Pombert JF, Ebert D, Keeling PJ, (2009) Draft genome sequence of the Daphnia pathogen Octosporea bayeri: insights into the gene content of a large microsporidian genome and a model for host-parasite interactions. Genome Biol 10: R106.
-
(2009)
Genome Biol
, vol.10
-
-
Corradi, N.1
Haag, K.L.2
Pombert, J.F.3
Ebert, D.4
Keeling, P.J.5
-
11
-
-
59249083056
-
Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi
-
Akiyoshi DE, Morrison HG, Lei S, Feng X, Zhang Q, et al. (2009) Genomic survey of the non-cultivatable opportunistic human pathogen, Enterocytozoon bieneusi. PLoS Pathog 5: e1000261.
-
(2009)
PLoS Pathog
, vol.5
-
-
Akiyoshi, D.E.1
Morrison, H.G.2
Lei, S.3
Feng, X.4
Zhang, Q.5
-
12
-
-
0029907578
-
Myositis associated with a newly described microsporidian, Trachipleistophora hominis, in a patient with AIDS
-
Field AS, Marriott DJ, Milliken ST, Brew BJ, Canning EU, et al. (1996) Myositis associated with a newly described microsporidian, Trachipleistophora hominis, in a patient with AIDS. J Clin Microbiol 34: 2803-2811.
-
(1996)
J Clin Microbiol
, vol.34
, pp. 2803-2811
-
-
Field, A.S.1
Marriott, D.J.2
Milliken, S.T.3
Brew, B.J.4
Canning, E.U.5
-
13
-
-
0030021592
-
Development and ultrastructure of Trachipleistophora hominis n.g., n.sp. after in vitro isolation from an AIDS patient and inoculation into athymic mice
-
Hollister WS, Canning EU, Weidner E, Field AS, Kench J, et al. (1996) Development and ultrastructure of Trachipleistophora hominis n.g., n.sp. after in vitro isolation from an AIDS patient and inoculation into athymic mice. Parasitology 112 (Pt 1) (): 143-154.
-
(1996)
Parasitology
, vol.112
, Issue.Pt 1
, pp. 143-154
-
-
Hollister, W.S.1
Canning, E.U.2
Weidner, E.3
Field, A.S.4
Kench, J.5
-
14
-
-
0037158721
-
A mitochondrial remnant in the microsporidian Trachipleistophora hominis
-
Williams BA, Hirt RP, Lucocq JM, Embley TM, (2002) A mitochondrial remnant in the microsporidian Trachipleistophora hominis. Nature 418: 865-869.
-
(2002)
Nature
, vol.418
, pp. 865-869
-
-
Williams, B.A.1
Hirt, R.P.2
Lucocq, J.M.3
Embley, T.M.4
-
15
-
-
41649116646
-
Localization and functionality of microsporidian iron-sulphur cluster assembly proteins
-
Goldberg AV, Molik S, Tsaousis AD, Neumann K, Kuhnke G, et al. (2008) Localization and functionality of microsporidian iron-sulphur cluster assembly proteins. Nature 452: 624-628.
-
(2008)
Nature
, vol.452
, pp. 624-628
-
-
Goldberg, A.V.1
Molik, S.2
Tsaousis, A.D.3
Neumann, K.4
Kuhnke, G.5
-
16
-
-
20444440409
-
Molecular phylogeny of the Microsporidia: ecological, ultrastructural and taxonomic considerations
-
discussion 130
-
Vossbrinck CR, Debrunner-Vossbrinck BA, (2005) Molecular phylogeny of the Microsporidia: ecological, ultrastructural and taxonomic considerations. Folia parasitologica 52: 131-142; discussion 130.
-
(2005)
Folia Parasitologica
, vol.52
, pp. 131-142
-
-
Vossbrinck, C.R.1
Debrunner-Vossbrinck, B.A.2
-
17
-
-
33846528971
-
Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis
-
Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, et al. (2007) Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science 315: 207-212.
-
(2007)
Science
, vol.315
, pp. 207-212
-
-
Carlton, J.M.1
Hirt, R.P.2
Silva, J.C.3
Delcher, A.L.4
Schatz, M.5
-
18
-
-
33750344923
-
Streamlining and simplification of microbial genome architecture
-
Lynch M, (2006) Streamlining and simplification of microbial genome architecture. Annu Rev Microbiol 60: 327-349.
-
(2006)
Annu Rev Microbiol
, vol.60
, pp. 327-349
-
-
Lynch, M.1
-
19
-
-
44149118881
-
Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities
-
Williams BA, Lee RC, Becnel JJ, Weiss LM, Fast NM, et al. (2008) Genome sequence surveys of Brachiola algerae and Edhazardia aedis reveal microsporidia with low gene densities. BMC Genomics 9: 200.
-
(2008)
BMC Genomics
, vol.9
, pp. 200
-
-
Williams, B.A.1
Lee, R.C.2
Becnel, J.J.3
Weiss, L.M.4
Fast, N.M.5
-
20
-
-
77955953162
-
Constrained intron structures in a microsporidian
-
Lee RC, Gill EE, Roy SW, Fast NM, (2010) Constrained intron structures in a microsporidian. Mol Biol Evol 27: 1979-1982.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 1979-1982
-
-
Lee, R.C.1
Gill, E.E.2
Roy, S.W.3
Fast, N.M.4
-
21
-
-
84859224256
-
Diverse forms of RPS9 splicing are part of an evolving autoregulatory circuit
-
Plocik AM, Guthrie C, (2012) Diverse forms of RPS9 splicing are part of an evolving autoregulatory circuit. PLoS Genet 8: e1002620.
-
(2012)
PLoS Genet
, vol.8
-
-
Plocik, A.M.1
Guthrie, C.2
-
22
-
-
74049122005
-
Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation
-
Peyretaillade E, Goncalves O, Terrat S, Dugat-Bony E, Wincker P, et al. (2009) Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation. BMC Genomics 10: 607.
-
(2009)
BMC Genomics
, vol.10
, pp. 607
-
-
Peyretaillade, E.1
Goncalves, O.2
Terrat, S.3
Dugat-Bony, E.4
Wincker, P.5
-
23
-
-
69249205498
-
Transposable elements and factors influencing their success in eukaryotes
-
Pritham EJ, (2009) Transposable elements and factors influencing their success in eukaryotes. J Hered 100: 648-655.
-
(2009)
J Hered
, vol.100
, pp. 648-655
-
-
Pritham, E.J.1
-
24
-
-
75949085947
-
Characterization of a transcriptionally active Tc1-like transposon in the microsporidian Nosema bombycis
-
Xu J, Luo J, Debrunner-Vossbrinck B, Zhang X, Liu H, et al. (2010) Characterization of a transcriptionally active Tc1-like transposon in the microsporidian Nosema bombycis. Acta Parasitologica 55: 8-15.
-
(2010)
Acta Parasitologica
, vol.55
, pp. 8-15
-
-
Xu, J.1
Luo, J.2
Debrunner-Vossbrinck, B.3
Zhang, X.4
Liu, H.5
-
25
-
-
0036710930
-
Sequence survey of the genome of the opportunistic microsporidian pathogen, Vittaforma corneae
-
Mittleider D, Green LC, Mann VH, Michael SF, Didier ES, et al. (2002) Sequence survey of the genome of the opportunistic microsporidian pathogen, Vittaforma corneae. J Eukaryot Microbiol 49: 393-401.
-
(2002)
J Eukaryot Microbiol
, vol.49
, pp. 393-401
-
-
Mittleider, D.1
Green, L.C.2
Mann, V.H.3
Michael, S.F.4
Didier, E.S.5
-
26
-
-
0031259208
-
Genes coding for reverse transcriptase, DNA-directed RNA polymerase, and chitin synthase from the microsporidian Spraguea lophii
-
Hinkle G, Morrison HG, Sogin ML, (1997) Genes coding for reverse transcriptase, DNA-directed RNA polymerase, and chitin synthase from the microsporidian Spraguea lophii. Biol Bull 193: 250-251.
-
(1997)
Biol Bull
, vol.193
, pp. 250-251
-
-
Hinkle, G.1
Morrison, H.G.2
Sogin, M.L.3
-
27
-
-
0033158238
-
Mosquito (Diptera: Culicidae) host compatibility and vector competency for the human myositic parasite Trachipleistophora hominis (Phylum Microspora)
-
Weidner E, Canning EU, Rutledge CR, Meek CL, (1999) Mosquito (Diptera: Culicidae) host compatibility and vector competency for the human myositic parasite Trachipleistophora hominis (Phylum Microspora). J Med Entomol 36: 522-525.
-
(1999)
J Med Entomol
, vol.36
, pp. 522-525
-
-
Weidner, E.1
Canning, E.U.2
Rutledge, C.R.3
Meek, C.L.4
-
28
-
-
0034111931
-
Phylogenetic relationships of Pleistophora-like microsporidia based on small subunit ribosomal DNA sequences and implications for the source of Trachipleistophora hominis infections
-
Cheney SA, Lafranchi-Tristem NJ, Canning EU, (2000) Phylogenetic relationships of Pleistophora-like microsporidia based on small subunit ribosomal DNA sequences and implications for the source of Trachipleistophora hominis infections. J Eukaryot Microbiol 47: 280-287.
-
(2000)
J Eukaryot Microbiol
, vol.47
, pp. 280-287
-
-
Cheney, S.A.1
Lafranchi-Tristem, N.J.2
Canning, E.U.3
-
29
-
-
79959380449
-
Opportunistic nature of the mammalian microsporidia: experimental transmission of Trachipleistophora extenrec (Fungi: Microsporidia) between mammalian and insect hosts
-
Vavra J, Kamler M, Modry D, Koudela B, (2011) Opportunistic nature of the mammalian microsporidia: experimental transmission of Trachipleistophora extenrec (Fungi: Microsporidia) between mammalian and insect hosts. Parasitol Res 108: 1565-1573.
-
(2011)
Parasitol Res
, vol.108
, pp. 1565-1573
-
-
Vavra, J.1
Kamler, M.2
Modry, D.3
Koudela, B.4
-
30
-
-
39949083375
-
Conserved themes in small-RNA-mediated transposon control
-
Girard A, Hannon GJ, (2008) Conserved themes in small-RNA-mediated transposon control. Trends Cell Biol 18: 136-148.
-
(2008)
Trends Cell Biol
, vol.18
, pp. 136-148
-
-
Girard, A.1
Hannon, G.J.2
-
31
-
-
58249090017
-
The evolution of RNAi as a defence against viruses and transposable elements
-
Obbard DJ, Gordon KH, Buck AH, Jiggins FM, (2009) The evolution of RNAi as a defence against viruses and transposable elements. Philos Trans R Soc Lond B Biol Sci 364: 99-115.
-
(2009)
Philos Trans R Soc Lond B Biol Sci
, vol.364
, pp. 99-115
-
-
Obbard, D.J.1
Gordon, K.H.2
Buck, A.H.3
Jiggins, F.M.4
-
32
-
-
79960185923
-
Dicer recognizes the 5′ end of RNA for efficient and accurate processing
-
Park JE, Heo I, Tian Y, Simanshu DK, Chang H, et al. (2011) Dicer recognizes the 5′ end of RNA for efficient and accurate processing. Nature 475: 201-205.
-
(2011)
Nature
, vol.475
, pp. 201-205
-
-
Park, J.E.1
Heo, I.2
Tian, Y.3
Simanshu, D.K.4
Chang, H.5
-
33
-
-
70449560425
-
Distinct and overlapping roles for two Dicer-like proteins in the RNA interference pathways of the ancient eukaryote Trypanosoma brucei
-
Patrick KL, Shi H, Kolev NG, Ersfeld K, Tschudi C, et al. (2009) Distinct and overlapping roles for two Dicer-like proteins in the RNA interference pathways of the ancient eukaryote Trypanosoma brucei. Proc Natl Acad Sci U S A 106: 17933-17938.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 17933-17938
-
-
Patrick, K.L.1
Shi, H.2
Kolev, N.G.3
Ersfeld, K.4
Tschudi, C.5
-
34
-
-
77956565514
-
Effective gene silencing in a microsporidian parasite associated with honeybee (Apis mellifera) colony declines
-
Paldi N, Glick E, Oliva M, Zilberberg Y, Aubin L, et al. (2010) Effective gene silencing in a microsporidian parasite associated with honeybee (Apis mellifera) colony declines. Appl Environ Microbiol 76: 5960-5964.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 5960-5964
-
-
Paldi, N.1
Glick, E.2
Oliva, M.3
Zilberberg, Y.4
Aubin, L.5
-
35
-
-
33644782643
-
The new higher level classification of eukaryotes with emphasis on the taxonomy of protists
-
Adl SM, Simpson AG, Farmer MA, Andersen RA, Anderson OR, et al. (2005) The new higher level classification of eukaryotes with emphasis on the taxonomy of protists. J Eukaryot Microbiol 52: 399-451.
-
(2005)
J Eukaryot Microbiol
, vol.52
, pp. 399-451
-
-
Adl, S.M.1
Simpson, A.G.2
Farmer, M.A.3
Andersen, R.A.4
Anderson, O.R.5
-
36
-
-
75549090603
-
The Pfam protein families database
-
Finn RD, Mistry J, Tate J, Coggill P, Heger A, et al. (2010) The Pfam protein families database. Nucleic Acids Res 38: D211-222.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Finn, R.D.1
Mistry, J.2
Tate, J.3
Coggill, P.4
Heger, A.5
-
37
-
-
28644440101
-
Dollo parsimony and the reconstruction of genome evolution
-
In: Albert VA, editor, Oxford: Oxford University Press
-
Rogozin IB, Wolf YI, Babenko VN, Koonin EV (2005) Dollo parsimony and the reconstruction of genome evolution. In: Albert VA, editor. Parsimony, phylogeny and genomics. Oxford: Oxford University Press. pp. 190-229.
-
(2005)
Parsimony, phylogeny and genomics
, pp. 190-229
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Babenko, V.N.3
Koonin, E.V.4
-
38
-
-
0013854819
-
Study by electron microscope of the morphology and development of some Microsporidia
-
Vavra J, (1965) Study by electron microscope of the morphology and development of some Microsporidia. C R Acad Sci Hebd Seances Acad Sci D 261: 3467-3470.
-
(1965)
C R Acad Sci Hebd Seances Acad Sci D
, vol.261
, pp. 3467-3470
-
-
Vavra, J.1
-
39
-
-
0021958933
-
Codon usage and tRNA content in unicellular and multicellular organisms
-
Ikemura T, (1985) Codon usage and tRNA content in unicellular and multicellular organisms. Mol Biol Evol 2: 13-34.
-
(1985)
Mol Biol Evol
, vol.2
, pp. 13-34
-
-
Ikemura, T.1
-
40
-
-
0037838657
-
Horizontal gene transfer and the evolution of parasitic protozoa
-
Richards TA, Hirt RP, Williams BA, Embley TM, (2003) Horizontal gene transfer and the evolution of parasitic protozoa. Protist 154: 17-32.
-
(2003)
Protist
, vol.154
, pp. 17-32
-
-
Richards, T.A.1
Hirt, R.P.2
Williams, B.A.3
Embley, T.M.4
-
41
-
-
84868125862
-
Microsporidia: Horizontal gene transfers in vicious parasites
-
Selman M, Corradi N, (2011) Microsporidia: Horizontal gene transfers in vicious parasites. Mob Genet Elements 1: 251-255.
-
(2011)
Mob Genet Elements
, vol.1
, pp. 251-255
-
-
Selman, M.1
Corradi, N.2
-
42
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
Enright AJ, Van Dongen S, Ouzounis CA, (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res 30: 1575-1584.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
van Dongen, S.2
Ouzounis, C.A.3
-
43
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR, (1998) Profile hidden Markov models. Bioinformatics 14: 755-763.
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
44
-
-
16344373015
-
Protein homology detection by HMM-HMM comparison
-
Soding J, (2005) Protein homology detection by HMM-HMM comparison. Bioinformatics 21: 951-960.
-
(2005)
Bioinformatics
, vol.21
, pp. 951-960
-
-
Soding, J.1
-
45
-
-
44349083493
-
A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi
-
Tsaousis AD, Kunji ER, Goldberg AV, Lucocq JM, Hirt RP, et al. (2008) A novel route for ATP acquisition by the remnant mitochondria of Encephalitozoon cuniculi. Nature 453: 553-556.
-
(2008)
Nature
, vol.453
, pp. 553-556
-
-
Tsaousis, A.D.1
Kunji, E.R.2
Goldberg, A.V.3
Lucocq, J.M.4
Hirt, R.P.5
-
47
-
-
0035692811
-
The leucine-rich repeat as a protein recognition motif
-
Kobe B, Kajava AV, (2001) The leucine-rich repeat as a protein recognition motif. Curr Opin Struct Biol 11: 725-732.
-
(2001)
Curr Opin Struct Biol
, vol.11
, pp. 725-732
-
-
Kobe, B.1
Kajava, A.V.2
-
48
-
-
44449110041
-
Surface antigens and potential virulence factors from parasites detected by comparative genomics of perfect amino acid repeats
-
Fankhauser N, Nguyen-Ha TM, Adler J, Maser P, (2007) Surface antigens and potential virulence factors from parasites detected by comparative genomics of perfect amino acid repeats. Proteome Sci 5: 20.
-
(2007)
Proteome Sci
, vol.5
, pp. 20
-
-
Fankhauser, N.1
Nguyen-Ha, T.M.2
Adler, J.3
Maser, P.4
-
49
-
-
66649105285
-
Evolution of pathogenicity and sexual reproduction in eight Candida genomes
-
Butler G, Rasmussen MD, Lin MF, Santos MA, Sakthikumar S, et al. (2009) Evolution of pathogenicity and sexual reproduction in eight Candida genomes. Nature 459: 657-662.
-
(2009)
Nature
, vol.459
, pp. 657-662
-
-
Butler, G.1
Rasmussen, M.D.2
Lin, M.F.3
Santos, M.A.4
Sakthikumar, S.5
-
50
-
-
46949104585
-
The interaction network of the chaperonin CCT
-
Dekker C, Stirling PC, McCormack EA, Filmore H, Paul A, et al. (2008) The interaction network of the chaperonin CCT. EMBO J 27: 1827-1839.
-
(2008)
EMBO J
, vol.27
, pp. 1827-1839
-
-
Dekker, C.1
Stirling, P.C.2
McCormack, E.A.3
Filmore, H.4
Paul, A.5
-
51
-
-
0032577573
-
Prefoldin, a chaperone that delivers unfolded proteins to cytosolic chaperonin
-
Vainberg IE, Lewis SA, Rommelaere H, Ampe C, Vandekerckhove J, et al. (1998) Prefoldin, a chaperone that delivers unfolded proteins to cytosolic chaperonin. Cell 93: 863-873.
-
(1998)
Cell
, vol.93
, pp. 863-873
-
-
Vainberg, I.E.1
Lewis, S.A.2
Rommelaere, H.3
Ampe, C.4
Vandekerckhove, J.5
-
52
-
-
83855165692
-
Extreme genome reduction in symbiotic bacteria
-
McCutcheon JP, Moran NA, (2012) Extreme genome reduction in symbiotic bacteria. Nature Rev Microbiol 10: 13-26.
-
(2012)
Nature Rev Microbiol
, vol.10
, pp. 13-26
-
-
McCutcheon, J.P.1
Moran, N.A.2
-
53
-
-
0037161813
-
Endosymbiotic bacteria: groEL buffers against deleterious mutations
-
Fares MA, Ruiz-Gonzalez MX, Moya A, Elena SF, Barrio E, (2002) Endosymbiotic bacteria: groEL buffers against deleterious mutations. Nature 417: 398.
-
(2002)
Nature
, vol.417
, pp. 398
-
-
Fares, M.A.1
Ruiz-Gonzalez, M.X.2
Moya, A.3
Elena, S.F.4
Barrio, E.5
-
54
-
-
34248203076
-
Analogs of the Golgi complex in microsporidia: structure and avesicular mechanisms of function
-
Beznoussenko GV, Dolgikh VV, Seliverstova EV, Semenov PB, Tokarev YS, et al. (2007) Analogs of the Golgi complex in microsporidia: structure and avesicular mechanisms of function. J Cell Sci 120: 1288-1298.
-
(2007)
J Cell Sci
, vol.120
, pp. 1288-1298
-
-
Beznoussenko, G.V.1
Dolgikh, V.V.2
Seliverstova, E.V.3
Semenov, P.B.4
Tokarev, Y.S.5
-
55
-
-
77957336940
-
The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism
-
Keeling PJ, Corradi N, Morrison HG, Haag KL, Ebert D, et al. (2010) The reduced genome of the parasitic microsporidian Enterocytozoon bieneusi lacks genes for core carbon metabolism. Genome Biol Evol 2: 304-309.
-
(2010)
Genome Biol Evol
, vol.2
, pp. 304-309
-
-
Keeling, P.J.1
Corradi, N.2
Morrison, H.G.3
Haag, K.L.4
Ebert, D.5
-
56
-
-
33745730659
-
Activities of enzymes of carbohydrate and energy metabolism of the intracellular stages of the microsporidian, Nosema grylli
-
Dolgikh VV, (2000) Activities of enzymes of carbohydrate and energy metabolism of the intracellular stages of the microsporidian, Nosema grylli. Protistology 1: 87-91.
-
(2000)
Protistology
, vol.1
, pp. 87-91
-
-
Dolgikh, V.V.1
-
57
-
-
77649248007
-
A broad distribution of the alternative oxidase in microsporidian parasites
-
Williams BA, Elliot C, Burri L, Kido Y, Kita K, et al. (2010) A broad distribution of the alternative oxidase in microsporidian parasites. PLoS Pathog 6: e1000761.
-
(2010)
PLoS Pathog
, vol.6
-
-
Williams, B.A.1
Elliot, C.2
Burri, L.3
Kido, Y.4
Kita, K.5
-
59
-
-
58149202169
-
The transporter classification database: recent advances
-
Saier MH Jr, Yen MR, Noto K, Tamang DG, Elkan C, (2009) The transporter classification database: recent advances. Nucleic Acids Res 37: D274-278.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Saier Jr., M.H.1
Yen, M.R.2
Noto, K.3
Tamang, D.G.4
Elkan, C.5
-
60
-
-
0346494926
-
TransportDB: A relational database of cellular membrane transport systems
-
Ren Q, Kang KH, Paulsen IT, (2004) TransportDB: A relational database of cellular membrane transport systems. Nucleic Acids Res 32: 284-288.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 284-288
-
-
Ren, Q.1
Kang, K.H.2
Paulsen, I.T.3
-
62
-
-
25844487733
-
Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates
-
Dean M, Annilo T, (2005) Evolution of the ATP-binding cassette (ABC) transporter superfamily in vertebrates. Annu Rev Genomics Hum Genet 6: 123-142.
-
(2005)
Annu Rev Genomics Hum Genet
, vol.6
, pp. 123-142
-
-
Dean, M.1
Annilo, T.2
-
63
-
-
71449097048
-
ABC transporters in Saccharomyces cerevisiae and their interactors: new technology advances the biology of the ABCC (MRP) subfamily
-
Paumi CM, Chuk M, Snider J, Stagljar I, Michaelis S, (2009) ABC transporters in Saccharomyces cerevisiae and their interactors: new technology advances the biology of the ABCC (MRP) subfamily. Microbiol Mol Biol Rev 73: 577-593.
-
(2009)
Microbiol Mol Biol Rev
, vol.73
, pp. 577-593
-
-
Paumi, C.M.1
Chuk, M.2
Snider, J.3
Stagljar, I.4
Michaelis, S.5
-
64
-
-
0037031860
-
Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast
-
Wilcox LJ, Balderes DA, Wharton B, Tinkelenberg AH, Rao G, et al. (2002) Transcriptional profiling identifies two members of the ATP-binding cassette transporter superfamily required for sterol uptake in yeast. J Biol Chem 277: 32466-32472.
-
(2002)
J Biol Chem
, vol.277
, pp. 32466-32472
-
-
Wilcox, L.J.1
Balderes, D.A.2
Wharton, B.3
Tinkelenberg, A.H.4
Rao, G.5
-
65
-
-
33645744855
-
Proteases in parasitic diseases
-
McKerrow JH, Caffrey C, Kelly B, Loke P, Sajid M, (2006) Proteases in parasitic diseases. Annu Rev Pathol 1: 497-536.
-
(2006)
Annu Rev Pathol
, vol.1
, pp. 497-536
-
-
McKerrow, J.H.1
Caffrey, C.2
Kelly, B.3
Loke, P.4
Sajid, M.5
-
66
-
-
0035896736
-
Identification of a chlamydial protease-like activity factor responsible for the degradation of host transcription factors
-
Zhong G, Fan P, Ji H, Dong F, Huang Y, (2001) Identification of a chlamydial protease-like activity factor responsible for the degradation of host transcription factors. J Exp Med 193: 935-942.
-
(2001)
J Exp Med
, vol.193
, pp. 935-942
-
-
Zhong, G.1
Fan, P.2
Ji, H.3
Dong, F.4
Huang, Y.5
-
67
-
-
0035339494
-
Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases
-
Pei J, Grishin NV, (2001) Type II CAAX prenyl endopeptidases belong to a novel superfamily of putative membrane-bound metalloproteases. Trends Biochem Sci 26: 275-277.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 275-277
-
-
Pei, J.1
Grishin, N.V.2
-
68
-
-
0036589206
-
Bacteriocin diversity: ecological and evolutionary perspectives
-
Riley MA, Wertz JE, (2002) Bacteriocin diversity: ecological and evolutionary perspectives. Biochimie 84: 357-364.
-
(2002)
Biochimie
, vol.84
, pp. 357-364
-
-
Riley, M.A.1
Wertz, J.E.2
-
69
-
-
14544294428
-
The genome of the protist parasite Entamoeba histolytica
-
Loftus B, Anderson I, Davies R, Alsmark UC, Samuelson J, et al. (2005) The genome of the protist parasite Entamoeba histolytica. Nature 433: 865-868.
-
(2005)
Nature
, vol.433
, pp. 865-868
-
-
Loftus, B.1
Anderson, I.2
Davies, R.3
Alsmark, U.C.4
Samuelson, J.5
-
70
-
-
22244472295
-
Comparative genomics of trypanosomatid parasitic protozoa
-
El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, et al. (2005) Comparative genomics of trypanosomatid parasitic protozoa. Science 309: 404-409.
-
(2005)
Science
, vol.309
, pp. 404-409
-
-
El-Sayed, N.M.1
Myler, P.J.2
Blandin, G.3
Berriman, M.4
Crabtree, J.5
-
71
-
-
22244441812
-
The genome of the African trypanosome Trypanosoma brucei
-
Berriman M, Ghedin E, Hertz-Fowler C, Blandin G, Renauld H, et al. (2005) The genome of the African trypanosome Trypanosoma brucei. Science 309: 416-422.
-
(2005)
Science
, vol.309
, pp. 416-422
-
-
Berriman, M.1
Ghedin, E.2
Hertz-Fowler, C.3
Blandin, G.4
Renauld, H.5
-
72
-
-
0033582323
-
Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins
-
Hirt RP, Logsdon JM Jr, Healy B, Dorey MW, Doolittle WF, et al. (1999) Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins. Proc Natl Acad Sci USA 96: 580-585.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 580-585
-
-
Hirt, R.P.1
Logsdon Jr., J.M.2
Healy, B.3
Dorey, M.W.4
Doolittle, W.F.5
-
73
-
-
55249086237
-
Microsporidia evolved from ancestral sexual fungi
-
Lee SC, Corradi N, Byrnes EJ 3rd, Torres-Martinez S, Dietrich FS, et al. (2008) Microsporidia evolved from ancestral sexual fungi. Curr Biol 18: 1675-1679.
-
(2008)
Curr Biol
, vol.18
, pp. 1675-1679
-
-
Lee, S.C.1
Corradi, N.2
Byrnes 3rd., E.J.3
Torres-Martinez, S.4
Dietrich, F.S.5
-
74
-
-
79954732034
-
Zygomycetes, microsporidia, and the evolutionary ancestry of sex determination
-
Koestler T, Ebersberger I, (2011) Zygomycetes, microsporidia, and the evolutionary ancestry of sex determination. Genome Biol Evol 3: 186-194.
-
(2011)
Genome Biol Evol
, vol.3
, pp. 186-194
-
-
Koestler, T.1
Ebersberger, I.2
-
75
-
-
20444437297
-
"Polar vesicles" of microsporidia are mitochondrial remnants ("mitosomes")?
-
Vavra J, (2005) "Polar vesicles" of microsporidia are mitochondrial remnants ("mitosomes")? Folia Parasitol (Praha) 52: 193-195.
-
(2005)
Folia Parasitol (Praha)
, vol.52
, pp. 193-195
-
-
Vavra, J.1
-
76
-
-
68949128587
-
Function and biogenesis of iron-sulphur proteins
-
Lill R, (2009) Function and biogenesis of iron-sulphur proteins. Nature 460: 831-838.
-
(2009)
Nature
, vol.460
, pp. 831-838
-
-
Lill, R.1
-
77
-
-
83655212423
-
Eukaryotic DNA polymerases require an iron-sulfur cluster for the formation of active complexes
-
Netz DJ, Stith CM, Stumpfig M, Kopf G, Vogel D, et al. (2012) Eukaryotic DNA polymerases require an iron-sulfur cluster for the formation of active complexes. Nat Chem Biol 8: 125-132.
-
(2012)
Nat Chem Biol
, vol.8
, pp. 125-132
-
-
Netz, D.J.1
Stith, C.M.2
Stumpfig, M.3
Kopf, G.4
Vogel, D.5
-
78
-
-
58149327046
-
Evidence of a reduced and modified mitochondrial protein import apparatus in microsporidian mitosomes
-
Waller RF, Jabbour C, Chan NC, Celik N, Likic VA, et al. (2009) Evidence of a reduced and modified mitochondrial protein import apparatus in microsporidian mitosomes. Eukaryot Cell 8: 19-26.
-
(2009)
Eukaryot Cell
, vol.8
, pp. 19-26
-
-
Waller, R.F.1
Jabbour, C.2
Chan, N.C.3
Celik, N.4
Likic, V.A.5
-
79
-
-
68749112707
-
Importing mitochondrial proteins: machineries and mechanisms
-
Chacinska A, Koehler CM, Milenkovic D, Lithgow T, Pfanner N, (2009) Importing mitochondrial proteins: machineries and mechanisms. Cell 138: 628-644.
-
(2009)
Cell
, vol.138
, pp. 628-644
-
-
Chacinska, A.1
Koehler, C.M.2
Milenkovic, D.3
Lithgow, T.4
Pfanner, N.5
-
80
-
-
33750436226
-
Microsporidian mitosomes retain elements of the general mitochondrial targeting system
-
Burri L, Williams BA, Bursac D, Lithgow T, Keeling PJ, (2006) Microsporidian mitosomes retain elements of the general mitochondrial targeting system. Proc Natl Acad Sci U S A 103: 15916-15920.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 15916-15920
-
-
Burri, L.1
Williams, B.A.2
Bursac, D.3
Lithgow, T.4
Keeling, P.J.5
-
81
-
-
79955453718
-
Immunolocalization of an alternative respiratory chain in Antonospora (Paranosema) locustae spores: Mitosomes retain their role in microsporidial energy metabolism
-
Dolgikh VV, Senderskiy IV, Pavlova OA, Naumov AM, Beznoussenko GV, (2011) Immunolocalization of an alternative respiratory chain in Antonospora (Paranosema) locustae spores: Mitosomes retain their role in microsporidial energy metabolism. Eukaryot Cell 10: 588-593.
-
(2011)
Eukaryot Cell
, vol.10
, pp. 588-593
-
-
Dolgikh, V.V.1
Senderskiy, I.V.2
Pavlova, O.A.3
Naumov, A.M.4
Beznoussenko, G.V.5
-
82
-
-
58149214349
-
Reductive evolution of the mitochondrial processing peptidases of the unicellular parasites Trichomonas vaginalis and Giardia intestinalis
-
Smid O, Matuskova A, Harris SR, Kucera T, Novotny M, et al. (2008) Reductive evolution of the mitochondrial processing peptidases of the unicellular parasites Trichomonas vaginalis and Giardia intestinalis. PLoS pathog 4: e1000243.
-
(2008)
PLoS Pathog
, vol.4
-
-
Smid, O.1
Matuskova, A.2
Harris, S.R.3
Kucera, T.4
Novotny, M.5
-
83
-
-
77349122827
-
Diversity and reductive evolution of mitochondria among microbial eukaryotes
-
Hjort K, Goldberg AV, Tsaousis AD, Hirt RP, Embley TM, (2010) Diversity and reductive evolution of mitochondria among microbial eukaryotes. Philos Trans R Soc Lond B Biol Sci 365: 713-727.
-
(2010)
Philos Trans R Soc Lond B Biol Sci
, vol.365
, pp. 713-727
-
-
Hjort, K.1
Goldberg, A.V.2
Tsaousis, A.D.3
Hirt, R.P.4
Embley, T.M.5
-
84
-
-
33745711863
-
Proteomic analysis of the eukaryotic parasite Encephalitozoon cuniculi (microsporidia): a reference map for proteins expressed in late sporogonial stages
-
C P.V
-
Brosson D, Kuhn L, Delbac F, Garin J, C PV, et al. (2006) Proteomic analysis of the eukaryotic parasite Encephalitozoon cuniculi (microsporidia): a reference map for proteins expressed in late sporogonial stages. Proteomics 6: 3625-3635.
-
(2006)
Proteomics
, vol.6
, pp. 3625-3635
-
-
Brosson, D.1
Kuhn, L.2
Delbac, F.3
Garin, J.4
-
85
-
-
23044455933
-
The microsporidian polar tube: a highly specialised invasion organelle
-
Xu Y, Weiss LM, (2005) The microsporidian polar tube: a highly specialised invasion organelle. Int J Parasitol 35: 941-953.
-
(2005)
Int J Parasitol
, vol.35
, pp. 941-953
-
-
Xu, Y.1
Weiss, L.M.2
-
86
-
-
23944490133
-
Microsporidian polar tube proteins: highly divergent but closely linked genes encode PTP1 and PTP2 in members of the evolutionarily distant Antonospora and Encephalitozoon groups
-
Polonais V, Prensier G, Méténier G, Vivarès CP, Delbac F, (2005) Microsporidian polar tube proteins: highly divergent but closely linked genes encode PTP1 and PTP2 in members of the evolutionarily distant Antonospora and Encephalitozoon groups. Fungal Genet Biol 42: 791-803.
-
(2005)
Fungal Genet Biol
, vol.42
, pp. 791-803
-
-
Polonais, V.1
Prensier, G.2
Méténier, G.3
Vivarès, C.P.4
Delbac, F.5
-
87
-
-
28444441957
-
Tetraspanin functions and associated microdomains
-
Hemler ME, (2005) Tetraspanin functions and associated microdomains. Nat Rev Mol Cell Biol 6: 801-811.
-
(2005)
Nat Rev Mol Cell Biol
, vol.6
, pp. 801-811
-
-
Hemler, M.E.1
-
88
-
-
54249152944
-
The crucial role of the Pls1 tetraspanin during ascospore germination in Podospora anserina provides an example of the convergent evolution of morphogenetic processes in fungal plant pathogens and saprobes
-
Lambou K, Malagnac F, Barbisan C, Tharreau D, Lebrun MH, et al. (2008) The crucial role of the Pls1 tetraspanin during ascospore germination in Podospora anserina provides an example of the convergent evolution of morphogenetic processes in fungal plant pathogens and saprobes. Eukaryot Cell 7: 1809-1818.
-
(2008)
Eukaryot Cell
, vol.7
, pp. 1809-1818
-
-
Lambou, K.1
Malagnac, F.2
Barbisan, C.3
Tharreau, D.4
Lebrun, M.H.5
-
89
-
-
0035811017
-
PLS1, a gene encoding a tetraspanin-like protein, is required for penetration of rice leaf by the fungal pathogen Magnaporthe grisea
-
Clergeot PH, Gourgues M, Cots J, Laurans F, Latorse MP, et al. (2001) PLS1, a gene encoding a tetraspanin-like protein, is required for penetration of rice leaf by the fungal pathogen Magnaporthe grisea. Proc Natl Acad Sci U S A 98: 6963-6968.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 6963-6968
-
-
Clergeot, P.H.1
Gourgues, M.2
Cots, J.3
Laurans, F.4
Latorse, M.P.5
-
90
-
-
36849090615
-
Subcellular discharge of a serine protease mediates release of invasive malaria parasites from host erythrocytes
-
Yeoh S, O'Donnell RA, Koussis K, Dluzewski AR, Ansell KH, et al. (2007) Subcellular discharge of a serine protease mediates release of invasive malaria parasites from host erythrocytes. Cell 131: 1072-1083.
-
(2007)
Cell
, vol.131
, pp. 1072-1083
-
-
Yeoh, S.1
O'Donnell, R.A.2
Koussis, K.3
Dluzewski, A.R.4
Ansell, K.H.5
-
91
-
-
33751354283
-
Identification of novel developmentally regulated genes in Encephalitozoon cuniculi: an endochitinase, a chitin-synthase, and two subtilisin-like proteases are induced during meront-to-sporont differentiation
-
Ronnebaumer K, Wagener J, Gross U, Bohne W, (2006) Identification of novel developmentally regulated genes in Encephalitozoon cuniculi: an endochitinase, a chitin-synthase, and two subtilisin-like proteases are induced during meront-to-sporont differentiation. J Eukaryot Microbiol 53 (Suppl 1):: S74-76.
-
(2006)
J Eukaryot Microbiol
, vol.53
, Issue.SUPPL. 1
-
-
Ronnebaumer, K.1
Wagener, J.2
Gross, U.3
Bohne, W.4
-
92
-
-
67049159825
-
SHRiMP: accurate mapping of short color-space reads
-
Rumble SM, Lacroute P, Dalca AV, Fiume M, Sidow A, et al. (2009) SHRiMP: accurate mapping of short color-space reads. PLoS Comput Biol 5: e1000386.
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Rumble, S.M.1
Lacroute, P.2
Dalca, A.V.3
Fiume, M.4
Sidow, A.5
-
93
-
-
58149197598
-
PEDANT covers all complete RefSeq genomes
-
Walter MC, Rattei T, Arnold R, Guldener U, Munsterkotter M, et al. (2009) PEDANT covers all complete RefSeq genomes. Nucleic Acids Res 37: D408-411.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Walter, M.C.1
Rattei, T.2
Arnold, R.3
Guldener, U.4
Munsterkotter, M.5
-
94
-
-
0034800374
-
InterProScan-an integration platform for the signature-recognition methods in InterPro
-
Zdobnov EM, Apweiler R, (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847-848.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
95
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
Bendtsen JD, Nielsen H, von Heijne G, Brunak S, (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340: 783-795.
-
(2004)
J Mol Biol
, vol.340
, pp. 783-795
-
-
Bendtsen, J.D.1
Nielsen, H.2
von Heijne, G.3
Brunak, S.4
-
96
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
-
Krogh A, Larsson B, von Heijne G, Sonnhammer EL, (2001) Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J Mol Biol 305: 567-580.
-
(2001)
J Mol Biol
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
von Heijne, G.3
Sonnhammer, E.L.4
-
97
-
-
0034201441
-
EMBOSS: the European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A, (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
98
-
-
4944233611
-
PhyloGenie: automated phylome generation and analysis
-
Frickey T, Lupas AN, (2004) PhyloGenie: automated phylome generation and analysis. Nucleic Acids Res 32: 5231-5238.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 5231-5238
-
-
Frickey, T.1
Lupas, A.N.2
-
99
-
-
57149096433
-
Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures
-
Stamatakis A, Ott M, (2008) Efficient computation of the phylogenetic likelihood function on multi-gene alignments and multi-core architectures. Philos Trans R Soc Lond B Biol Sci 363: 3977-3984.
-
(2008)
Philos Trans R Soc Lond B Biol Sci
, vol.363
, pp. 3977-3984
-
-
Stamatakis, A.1
Ott, M.2
-
100
-
-
0026691182
-
The rapid generation of mutation data matrices from protein sequences
-
Jones DT, Taylor WR, Thornton JM, (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8: 275-282.
-
(1992)
Comput Appl Biosci
, vol.8
, pp. 275-282
-
-
Jones, D.T.1
Taylor, W.R.2
Thornton, J.M.3
-
101
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, et al. (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110: 462-467.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
-
102
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
Basehoar AD, Zanton SJ, Pugh BF, (2004) Identification and distinct regulation of yeast TATA box-containing genes. Cell 116: 699-709.
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
105
-
-
33846057724
-
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
-
Pruitt KD, Tatusova T, Maglott DR, (2007) NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins. Nucleic Acids Res 35: D61-65.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Pruitt, K.D.1
Tatusova, T.2
Maglott, D.R.3
-
108
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Res 28: 235-242.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
-
109
-
-
0028961335
-
SCOP: a structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C, (1995) SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 247: 536-540.
-
(1995)
J Mol Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
111
-
-
58149203228
-
SUPERFAMILY-sophisticated comparative genomics, data mining, visualization and phylogeny
-
Wilson D, Pethica R, Zhou Y, Talbot C, Vogel C, et al. (2009) SUPERFAMILY-sophisticated comparative genomics, data mining, visualization and phylogeny. Nucleic Acids Res 37: D380-386.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Wilson, D.1
Pethica, R.2
Zhou, Y.3
Talbot, C.4
Vogel, C.5
-
112
-
-
78651310799
-
Database resources of the National Center for Biotechnology Information
-
Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, et al. (2010) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res 39: D38-51.
-
(2010)
Nucleic Acids Res
, vol.39
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bolton, E.4
Bryant, S.H.5
-
113
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
-
114
-
-
0030660581
-
A genomic perspective on protein families
-
Tatusov RL, Koonin EV, Lipman DJ, (1997) A genomic perspective on protein families. Science 278: 631-637.
-
(1997)
Science
, vol.278
, pp. 631-637
-
-
Tatusov, R.L.1
Koonin, E.V.2
Lipman, D.J.3
-
115
-
-
77955038643
-
Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood
-
Csuros M, (2010) Count: evolutionary analysis of phylogenetic profiles with parsimony and likelihood. Bioinformatics 26: 1910-1912.
-
(2010)
Bioinformatics
, vol.26
, pp. 1910-1912
-
-
Csuros, M.1
-
117
-
-
0345531106
-
Enzyme-specific profiles for genome annotation: PRIAM
-
Claudel-Renard C, Chevalet C, Faraut T, Kahn D, (2003) Enzyme-specific profiles for genome annotation: PRIAM. Nucleic Acids Res 31: 6633-6639.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 6633-6639
-
-
Claudel-Renard, C.1
Chevalet, C.2
Faraut, T.3
Kahn, D.4
-
118
-
-
14844349363
-
metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella
-
Pinney JW, Shirley MW, McConkey GA, Westhead DR, (2005) metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella. Nucleic Acids Res 33: 1399-1409.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 1399-1409
-
-
Pinney, J.W.1
Shirley, M.W.2
McConkey, G.A.3
Westhead, D.R.4
-
120
-
-
0032919364
-
KEGG: Kyoto Encyclopedia of Genes and Genomes
-
Ogata H, Goto S, Sato K, Fujibuchi W, Bono H, et al. (1999) KEGG: Kyoto Encyclopedia of Genes and Genomes. Nucleic Acids Res 27: 29-34.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
-
121
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, et al. (2010) New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 59: 307-321.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
-
122
-
-
2442691520
-
A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process
-
Lartillot N, Philippe H, (2004) A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process. Mol Biol Evol 21: 1095-1109.
-
(2004)
Mol Biol Evol
, vol.21
, pp. 1095-1109
-
-
Lartillot, N.1
Philippe, H.2
-
123
-
-
3242701529
-
Modeling compositional heterogeneity
-
Foster PG, (2004) Modeling compositional heterogeneity. Syst Biol 53: 485-495.
-
(2004)
Syst Biol
, vol.53
, pp. 485-495
-
-
Foster, P.G.1
-
124
-
-
0000228203
-
A model of evolutionary change in proteins
-
In: Dayhoff MO, editor, Washington D.C.: National Biomedical Research Foundation
-
Dayhoff MO, Schwartz RM, Orcutt BC (1978) A model of evolutionary change in proteins. In: Dayhoff MO, editor. Atlas of protein sequence and structure, vol 5, suppl. 3. Washington D.C.: National Biomedical Research Foundation. pp. 345-352.
-
(1978)
Atlas of protein sequence and structure
, vol.5
, Issue.SUPPL. 3
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
125
-
-
26944476271
-
Proteolytic activity in Encephalitozoon cuniculi sporogonial stages: predominance of metallopeptidases including an aminopeptidase-P-like enzyme
-
Chavant P, Taupin V, El Alaoui H, Wawrzyniak I, Chambon C, et al. (2005) Proteolytic activity in Encephalitozoon cuniculi sporogonial stages: predominance of metallopeptidases including an aminopeptidase-P-like enzyme. Int J Parasitol 35: 1425-1433.
-
(2005)
Int J Parasitol
, vol.35
, pp. 1425-1433
-
-
Chavant, P.1
Taupin, V.2
El Alaoui, H.3
Wawrzyniak, I.4
Chambon, C.5
-
126
-
-
5644302167
-
A comprehensive proteome map of growing Bacillus subtilis cells
-
Eymann C, Dreisbach A, Albrecht D, Bernhardt J, Becher D, et al. (2004) A comprehensive proteome map of growing Bacillus subtilis cells. Proteomics 4: 2849-2876.
-
(2004)
Proteomics
, vol.4
, pp. 2849-2876
-
-
Eymann, C.1
Dreisbach, A.2
Albrecht, D.3
Bernhardt, J.4
Becher, D.5
-
127
-
-
84860805449
-
Global impact of protein arginine phosphorylation on the physiology of Bacillus subtilis
-
Elsholz AK, Turgay K, Michalik S, Hessling B, Gronau K, et al. (2012) Global impact of protein arginine phosphorylation on the physiology of Bacillus subtilis. Proc Natl Acad Sci U S A 109: 7451-7456.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 7451-7456
-
-
Elsholz, A.K.1
Turgay, K.2
Michalik, S.3
Hessling, B.4
Gronau, K.5
-
128
-
-
77957220208
-
Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research
-
Vizcaino JA, Foster JM, Martens L, (2010) Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research. J Proteomics 73: 2136-2146.
-
(2010)
J Proteomics
, vol.73
, pp. 2136-2146
-
-
Vizcaino, J.A.1
Foster, J.M.2
Martens, L.3
-
129
-
-
46349104643
-
Quantification of structures and gold labeling in transmission electron microscopy
-
Lucocq J, (2008) Quantification of structures and gold labeling in transmission electron microscopy. Methods Cell Biol 88: 59-82.
-
(2008)
Methods Cell Biol
, vol.88
, pp. 59-82
-
-
Lucocq, J.1
-
130
-
-
84860466062
-
Can data provenance go the full monty?
-
Lucocq J, (2012) Can data provenance go the full monty? Trends Cell Biol 22: 229-230.
-
(2012)
Trends Cell Biol
, vol.22
, pp. 229-230
-
-
Lucocq, J.1
-
131
-
-
33845270165
-
An unusual Dicer-like1 protein fuels the RNA interference pathway in Trypanosoma brucei
-
Shi H, Tschudi C, Ullu E, (2006) An unusual Dicer-like1 protein fuels the RNA interference pathway in Trypanosoma brucei. RNA 12: 2063-2072.
-
(2006)
RNA
, vol.12
, pp. 2063-2072
-
-
Shi, H.1
Tschudi, C.2
Ullu, E.3
-
133
-
-
0033959348
-
Compositional pressure and translational selection determine codon usage in the extremely GC-poor unicellular eukaryote Entamoeba histolytica
-
Romero H, Zavala A, Musto H, (2000) Compositional pressure and translational selection determine codon usage in the extremely GC-poor unicellular eukaryote Entamoeba histolytica. Gene 242: 307-311.
-
(2000)
Gene
, vol.242
, pp. 307-311
-
-
Romero, H.1
Zavala, A.2
Musto, H.3
|