Temporal and spatial Bean pod mottle virus-induced gene silencing in soybean

Molecular Plant Pathology

Volumn 13, Issue 9, 2012, Pages 1140-1148

  Juvale, Parijat S ^a   Hewezi, Tarek ^a   Zhang, Chunquan ^b   Kandoth, Pramod Kaitheri ^c   Mitchum, Melissa G ^c   Hill, John H ^a   Whitham, Steven A ^a   Baum, Thomas J ^a  

^a IOWA STATE UNIVERSITY   (United States)

^b ALCORN STATE UNIVERSITY   (United States)

^c UNIVERSITY OF MISSOURI   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GREEN FLUORESCENT PROTEIN;

ARTICLE; FLOWER; GENE SILENCING; GENETICS; METABOLISM; MOSAIC VIRUS; PHYSIOLOGY; PLANT LEAF; SOYBEAN; TIME; TRANSGENE; VIROLOGY;

COMOVIRUS; FLOWERS; GENE SILENCING; GREEN FLUORESCENT PROTEINS; PLANT LEAVES; SOYBEANS; TIME FACTORS; TRANSGENES;

BEAN POD MOTTLE VIRUS; GLYCINE MAX;

EID: 84867993107     PISSN: 14646722     EISSN: 13643703     Source Type: Journal    
DOI: 10.1111/j.1364-3703.2012.00808.x     Document Type: Article

References (42)

1. Alonso, J.M. and Ecker, J.R. (2006) Moving forward in reverse: genetic technologies to enable genome-wide phenomic screens in Arabidopsis. Nat. Rev. Genet. 7, 524-536.
2. Azpiroz-Leehan, R. and Feldmann, K.A. (1997) T-DNA insertion mutagenesis in Arabidopsis: going back and forth. Trends Genet. 13, 152-156.
3. Bennypaul, H.S., Mutti, J.S., Rustgi, S., Kumar, N., Okubara, P.A. and Gill, K.S. (2011) Virus-induced gene silencing (VIGS) of genes expressed in root, leaf, and meiotic tissues of wheat. Funct. Integr. Genomics, 12, 143-156.
4. Burch-Smith, T.M., Anderson, J.C., Martin, G.B. and Dinesh-Kumar, S.P. (2004) Applications and advantages of virus-induced gene silencing for gene function studies in plants. Plant J. 39, 734 - 746.
5. Chen, J.C., Jiang, C.Z., Gookin, T.E., Hunter, D.A., Clark, D.G. and Reid, M.S. (2004) Chalcone synthase as a reporter in virus-induced gene silencing studies of flower senescence. Plant Mol. Biol. 55, 521-530.
6. Constantin, G.D., Krath, B.N., MacFarlane, S.A., Nicolaisen, M., Johansen, I.E. and Lund, O.S. (2004) Virus-induced gene silencing as a tool for functional genomics in a legume species. Plant J. 40, 622-631.
7. Constantin, G.D., Grønlund, M., Johansen, I.E., Stougaard, J. and Lund, O.S. (2008) Virus-induced gene silencing (VIGS) as a reverse genetic tool to study development of symbiotic root nodules. Mol. Plant-Microbe Interact. 21, 720-727.
8. Dalmay, T., Hamilton, A., Rudd, S., Angell, S. and Baulcombe, D.C. (2000) An RNA-dependent RNA polymerase gene in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus. Cell, 101, 543-553.
9. Diaz-Camino, C., Annamalai, P., Sanchez, F., Kachroo, A. and Ghabrial, S.A. (2011) An effective virus-based gene silencing method for functional genomics studies in common bean. Plant Methods, 7, 16-27.
10. Ding, X.S., Schneider, W.L., Chaluvadi, S.R., Rouf, M.A. and Nelson, R.A. (2006) Characterization of a Brome mosaic virus strain and its use as a vector for gene silencing in monocotyledonous hosts. Mol. Plant-Microbe Interact. 19, 1229-1239.
11. Faivre-Rampant, O., Gilroy, E.M., Hrubikova, K., Hein, I., Millam, S., Loake, G.J., Birch, P., Taylor, M. and Lacomme, C. (2004) Potato virus X-induced gene silencing in leaves and tubers of potato. Plant Physiol. 134, 1308-1316.
12. Grønlund, M., Constantin, G., Piednoir, E., Kovacev, J., Johansen, I.E. and Lund, O.S. (2008) Virus-induced gene silencing in Medicago truncatula and Lathyrus odorata. Virus Res. 135, 345-349.
13. Grønlund, M., Olsen, A., Johansen, E.I. and Jakobsen, I. (2010) Protocol: using virus-induced gene silencing to study the arbuscular mycorrhizal symbiosis in Pisum sativum. Plant Methods, 6, 28-36.
14. Hein, I., Barciszewska-Pacak, M., Hrubikova, K., Williamson, S., Dinesen, M., Soenderby, I.E., Sundar, S., Jarmolowski, A., Shirasu, K. and Lacomme, C. (2005) Virus-induced gene silencing-based functional characterization of genes associated with powdery mildew resistance in barley. Plant Physiol. 138, 2155-2164.
15. Henikoff, S., Bradley, J., Till, B.J. and Comai, L. (2004) TILLING. Traditional mutagenesis meets functional genomics. Plant Physiol. 135, 630-636.
16. Hernandez-Garcia, C.M., Martinelli, A.P., Bouchard, R.A. and Finer, J.J. (2009) A soybean (Glycine max) polyubiquitin promoter gives strong constitutive expression in transgenic soybean. Plant Cell Rep. 28, 837-849.
17. Igarashi, A., Yamagata, K., Sugai, T., Takahashi, Y., Sugawara, E., Tamura, A., Yaegashi, H., Yamagishi, N., Takahashi, T. and Isogai, M. (2009) Apple latent spherical virus vectors for reliable and effective virus-induced gene silencing among a broad range of plants including tobacco, tomato, Arabidopsis thaliana, cucurbits, and legumes. Virology, 386, 407-416.
18. Kaloshian, I. (2007) Virus-induced gene silencing in plant roots. Methods Mol. Biol. 354, 173-181.
19. Kanazawa, A., Inaba, J., Shimura, H., Otagaki, S., Tsukahara, S., Matsuzawa, A., Kim, B.M., Goto, K. and Masuta, C. (2011a) Virus-mediated efficient induction of epigenetic modifications of endogenous genes with phenotypic changes in plants. Plant J. 65, 156-168.
20. Kanazawa, A., Inaba, J., Kasai, M., Shimura, H. and Masuta, C. (2011b) RNA-mediated epigenetic modifications of an endogenous gene targeted by a viral vector: a potent gene silencing system to produce a plant that does not carry a transgene but has altered traits. Plant Signal Behave. 6, 1090-1093.
21. Liu, E. and Page, J.E. (2008) Optimized cDNA libraries for virus-induced gene silencing (VIGS) using tobacco rattle virus. Plant Methods, 22, 4-5.
22. Liu, Y., Schiff, M. and Dinesh-Kumar, S.P. (2002) Virus-induced gene silencing in tomato. Plant J., 31, 777-786.
23. Liu, Y., Nakayama, N., Schiff, M., Litt, A., Irish, V.F. and Dinesh-Kumar, S.P. (2004) Virus induced gene silencing of a DEFICIENS ortholog in Nicotiana benthamiana. Plant Mol. Biol. 54, 701-711.
24. McGinnis, K., Chandler, V., Cone, K., Kaeppler, H., Kaeppler, S., Kerschen, A., Pikaard, C., Richards, E., Sidorenko, L., Smith, T., Springer, N. and Wulan, T. (2005) Transgene-induced RNA interference as a tool for plant functional genomics. Methods Enzymol. 392, 1-24.
25. Meng, Y., Moscou, M.J. and Wise, R.P. (2009) Blufensin1 negatively impacts basal defense in response to barley powdery mildew. Plant Physiol. 149, 271-285.
26. Nagamatsu, A., Matsuta, A., Senda, M., Matsuura, H., Kasai, A., Hong, J.S., Kitanura, K., Abe, J. and Kanazawa, A. (2007) Functional analysis of soybean genes involved in flavonoid biosynthesis by virus-induced gene silencing. Plant Biotechnol. J. 5, 778-790.
27. Palauqui, J.C., Elmayan, T., Pollien, J.M. and Vaucheret, H. (1997) Systemic acquired silencing: transgene-specific post-transcriptional silencing is transmitted by grafting from silenced stocks to non-silenced scions. EMBO J. 16, 4738-4745.
28. Pogue, G.P., Lindbo, J.A., Garger, S.J. and Fitzmaurice, W.P. (2002) Making an ally from an enemy: plant virology and the new agriculture. Annu. Rev. Phytopathol. 40, 45-74.
29. Purkayastha, A. and Dasgupta, I. (2009) Virus-induced gene silencing: a versatile tool for discovery of gene functions in plants. Plant Physiol. Biochem. 47, 967-976.
30. Ryu, C.M., Anand, A., Kang, L. and Mysore, K.S. (2004) Agrodrench: a novel and effective agroinoculation method for virus-induced gene silencing in roots and diverse solanaceous species. Plant J. 40, 322-331.
31. Saedler, R. and Baldwin, I.T. (2004) Virus-induced gene silencing of jasmonate-induced direct defences, nicotine and trypsin proteinase-inhibitors in Nicotiana attenuata. J. Exp. Bot. 55, 151-157.
32. Schmutz, J., Cannon, S.B., Schlueter, J., Ma, J., Mitros, T., Nelson, W., Hyten, D.L., Song, Q., Thelen, J.J., Cheng, J., Xu, D., Hellsten, U., May, G.D., Yu, Y., Sakurai, T., Umezawa, T., Bhattacharyya, M.K., Sandhu, D., Valliyodan, B., Lindquist, E., Peto, M., Grant, D., Shu, S., Goodstein, D., Barry, K., Futrell-Griggs, M., Abernathy, B., Du, J., Tian, Z., Zhu, L., Gill, N., Joshi, T., Libault, M., Sethuraman, A., Zhang, X.C., Shinozaki, K., Nguyen, H.T., Wing, R.A., Cregan, P., Specht, J., Grimwood, J., Rokhsar, D., Stacey, G., Shoemaker, R.C. and Jackson, S.A. (2010) Genome sequence of the palaeopolyploid soybean. Nature, 463, 178-183.
33. Scofield, S.R., Huang, L., Brandt, A.S. and Gill, B.S. (2005) Development of a virus-induced gene-silencing system for hexaploid wheat and its use in functional analysis of the Lr21-mediated leaf rust resistance pathway. Plant Physiol. 138, 2165-2173.
34. Senthil-Kumar, M. and Mysore, K.S. (2011) Virus-induced gene silencing can persist for more than 2years and also be transmitted to progeny seedlings in Nicotiana benthamiana and tomato. Plant Biotechnol. J. 9, 797-806.
35. Sonoda, S. and Nishiguchi, M. (2000) Graft transmission of post-transcriptional gene silencing: target specificity for RNA degradation is transmissible between silenced and non-silenced plants, but not between silenced plants. Plant J. 21, 1-8.
36. Turnage, M.A., Muangsan, N., Peele, C.G. and Robertson, D. (2002) Geminivirus-based vectors for gene silencing in Arabidopsis. Plant J. 30, 107-117.
37. Valentine, T.A., Roberts, I.M. and Oparka, K.J. (2002) Inhibition of tobacco mosaic virus replication in lateral roots is dependent on an activated meristem-derived signal. Protoplasma, 219, 184-196.
38. Yamagishi, N. and Yoshikawa, N. (2009) Virus induced gene silencing in seeds and emergence stage of soybean plants with Apple latent spherical virus vectors. Plant Mol. Biol. 71, 15-24.
39. Yuan, C., Li, C., Yan, L., Jackson, A.O., Liu, Z., Han, C., Yu, J. and Li, D. (2011) A high throughput barley stripe mosaic virus vector for virus induced gene silencing in monocots and dicots. Plos ONE 6, e26468.
40. Zhang, C. and Ghabrial, S.A. (2006) Development of Bean pod mottle virus-based vectors for stable protein expression and sequence-specific virus-induced gene silencing in soybean. Virology, 344, 401-411.
41. Zhang, C., Yang, C., Whitham, S.A. and Hill, J.H. (2009) Development and use of an efficient DNA-based viral gene-silencing vector for soybean. Mol. Plant-Microbe Interact. 22, 123-131.
42. Zhang, C., Bradshaw, J.D., Whitham, S.A. and Hill, J.H. (2010) The development of an efficient multipurpose Bean pod mottle virus viral vector set for foreign gene expression and RNA silencing. Plant Physiol. 153, 52-65.