-
1
-
-
33744981623
-
Image processing with ImageJ
-
Abramoff, M., Magelhaes, P., and Ram, S. (2004) Image processing with ImageJ. Biophotonics Int 11: 36-42.
-
(2004)
Biophotonics Int
, vol.11
, pp. 36-42
-
-
Abramoff, M.1
Magelhaes, P.2
Ram, S.3
-
2
-
-
77956255668
-
Using non-invasive magnetic resonance imaging (MRI) to assess the reduction of Cr(VI) using a biofilm-palladium catalyst
-
Beauregard, D., Yong, P., Macaskie, L., and Johns, M. (2010) Using non-invasive magnetic resonance imaging (MRI) to assess the reduction of Cr(VI) using a biofilm-palladium catalyst. Biotechnol Bioeng 107: 11-20.
-
(2010)
Biotechnol Bioeng
, vol.107
, pp. 11-20
-
-
Beauregard, D.1
Yong, P.2
Macaskie, L.3
Johns, M.4
-
3
-
-
79960098417
-
Extracellular reduction of hexavalent chromium by cytochromes MtrC and OmcA of Shewanella oneidensis MR-1
-
Belchik, S.M., Kennedy, D.W., Dohnalkova, A.C., Wang, Y.M., Sevinc, P.C., Wu, H., etal. (2011) Extracellular reduction of hexavalent chromium by cytochromes MtrC and OmcA of Shewanella oneidensis MR-1. Appl Environ Microbiol 77: 4035-4041.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 4035-4041
-
-
Belchik, S.M.1
Kennedy, D.W.2
Dohnalkova, A.C.3
Wang, Y.M.4
Sevinc, P.C.5
Wu, H.6
-
4
-
-
33846024073
-
Toxicity of Cr(III) to Shewanella sp. strain MR-4 during Cr(VI) reduction
-
Bencheikh-Latmani, R., Obraztsova, A., Mackey, M.R., Ellisman, M.H., and Tebo, B.M. (2007) Toxicity of Cr(III) to Shewanella sp. strain MR-4 during Cr(VI) reduction. Environ Sci Technol 41: 214-220.
-
(2007)
Environ Sci Technol
, vol.41
, pp. 214-220
-
-
Bencheikh-Latmani, R.1
Obraztsova, A.2
Mackey, M.R.3
Ellisman, M.H.4
Tebo, B.M.5
-
5
-
-
76649144493
-
Metabolic differentiation in biofilms as indicated by carbon dioxide production rates
-
Bester, E., Kroukamp, O., Wolfaardt, G., Boonzaaier, L., and Liss, S. (2010) Metabolic differentiation in biofilms as indicated by carbon dioxide production rates. Appl Environ Microbiol 76: 1189-1197.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 1189-1197
-
-
Bester, E.1
Kroukamp, O.2
Wolfaardt, G.3
Boonzaaier, L.4
Liss, S.5
-
6
-
-
1842678451
-
Uranium immobilization by sulfate-reducing biofilms
-
Beyenal, H., Sani, R., Peyton, B., Dohnalkova, A., Amonette, J., and Lewandowski, Z. (2004) Uranium immobilization by sulfate-reducing biofilms. Environ Sci Technol 38: 2067-2074.
-
(2004)
Environ Sci Technol
, vol.38
, pp. 2067-2074
-
-
Beyenal, H.1
Sani, R.2
Peyton, B.3
Dohnalkova, A.4
Amonette, J.5
Lewandowski, Z.6
-
7
-
-
0004026717
-
-
Hoboken, NJ, USA: John Wiley & Sons.
-
Bitton, G. (2005) Wastewater Microbiology. Hoboken, NJ, USA: John Wiley & Sons.
-
(2005)
Wastewater Microbiology
-
-
Bitton, G.1
-
8
-
-
9344269395
-
Self-generated diversity produces 'insurance effects' in biofilm communities
-
Boles, B., Thoendel, M., and Singh, P. (2004) Self-generated diversity produces 'insurance effects' in biofilm communities. Proc Natl Acad Sci USA 101: 16630-16635.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 16630-16635
-
-
Boles, B.1
Thoendel, M.2
Singh, P.3
-
9
-
-
33745600547
-
Molecular dynamics of the Shewanella oneidensis response to chromate stress
-
Brown, S.D., Thompson, M.R., Verberkmoes, N.C., Chourey, K., Shah, M., Zhou, J., etal. (2006) Molecular dynamics of the Shewanella oneidensis response to chromate stress. Mol Cell Proteomics 5: 1054-1071.
-
(2006)
Mol Cell Proteomics
, vol.5
, pp. 1054-1071
-
-
Brown, S.D.1
Thompson, M.R.2
Verberkmoes, N.C.3
Chourey, K.4
Shah, M.5
Zhou, J.6
-
10
-
-
79953277727
-
Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics
-
Cao, B., Shi, L., Brown, R.N., Xiong, Y.J., Fredrickson, J.K., Romine, M.F., etal. (2011a) Extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms: characterization by infrared spectroscopy and proteomics. Environ Microbiol 13: 1018-1031.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1018-1031
-
-
Cao, B.1
Shi, L.2
Brown, R.N.3
Xiong, Y.J.4
Fredrickson, J.K.5
Romine, M.F.6
-
11
-
-
79959901624
-
Contribution of extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms to U(VI) immobilization
-
Cao, B., Ahmed, B., Kennedy, D.W., Wang, Z.M., Shi, L., Marshall, M.J., etal. (2011b) Contribution of extracellular polymeric substances from Shewanella sp. HRCR-1 biofilms to U(VI) immobilization. Environ Sci Technol 45: 5483-5490.
-
(2011)
Environ Sci Technol
, vol.45
, pp. 5483-5490
-
-
Cao, B.1
Ahmed, B.2
Kennedy, D.W.3
Wang, Z.M.4
Shi, L.5
Marshall, M.J.6
-
12
-
-
69049089814
-
Interactions between uronic acids and chromium(III)
-
Cetin, Z., Kantar, C., and Alpaslan, M. (2009) Interactions between uronic acids and chromium(III). Environ Toxicol Chem 28: 1599-1608.
-
(2009)
Environ Toxicol Chem
, vol.28
, pp. 1599-1608
-
-
Cetin, Z.1
Kantar, C.2
Alpaslan, M.3
-
13
-
-
0028866136
-
Microbial biofilms
-
Costerton, J., Lewandowski, Z., Caldwell, D., Korber, D., and Lappin-Scott, H. (1995) Microbial biofilms. Annu Rev Microbiol 49: 711-745.
-
(1995)
Annu Rev Microbiol
, vol.49
, pp. 711-745
-
-
Costerton, J.1
Lewandowski, Z.2
Caldwell, D.3
Korber, D.4
Lappin-Scott, H.5
-
14
-
-
0032502811
-
The involvement of cell-to-cell signals in the development of a bacterial biofilm
-
Davies, D., Parsek, M., Pearson, J., Iglewski, B., Costerton, J., and Greenberg, E. (1998) The involvement of cell-to-cell signals in the development of a bacterial biofilm. Science 280: 295-298.
-
(1998)
Science
, vol.280
, pp. 295-298
-
-
Davies, D.1
Parsek, M.2
Pearson, J.3
Iglewski, B.4
Costerton, J.5
Greenberg, E.6
-
16
-
-
77950064082
-
Microtoming coupled to microarray analysis to evaluate the spatial metabolic status of Geobacter sulfurreducens biofilms
-
Franks, A., Nevin, K., Glaven, R., and Lovley, D. (2010) Microtoming coupled to microarray analysis to evaluate the spatial metabolic status of Geobacter sulfurreducens biofilms. ISME J 4: 509-519.
-
(2010)
ISME J
, vol.4
, pp. 509-519
-
-
Franks, A.1
Nevin, K.2
Glaven, R.3
Lovley, D.4
-
17
-
-
79959864043
-
Bacterial formation of extracellular U(VI) nanowires
-
Jiang, S., Kim, M.-G., Kim, S.-J., Suk, H., Lee, S., Noh, D., etal. (2011) Bacterial formation of extracellular U(VI) nanowires. Chem Commun 47: 8076-8078.
-
(2011)
Chem Commun
, vol.47
, pp. 8076-8078
-
-
Jiang, S.1
Kim, M.-G.2
Kim, S.-J.3
Suk, H.4
Lee, S.5
Noh, D.6
-
18
-
-
77956043616
-
Studies on uranium removal by the extracellular polysaccharide of a Pseudomonas aeruginosa strain
-
Kazy, S., Sar, P., and D'Souza, S. (2008) Studies on uranium removal by the extracellular polysaccharide of a Pseudomonas aeruginosa strain. Bioremediation J 12: 47-57.
-
(2008)
Bioremediation J
, vol.12
, pp. 47-57
-
-
Kazy, S.1
Sar, P.2
D'Souza, S.3
-
19
-
-
53249100199
-
Influence of uranium(VI) on the metabolic activity of stable multispecies biofilms studied by oxygen microsensors and fluorescence microscopy
-
Krawczyk-Barsch, E., Grossmann, K., Arnold, T., Hofmann, S., and Wobus, A. (2008) Influence of uranium(VI) on the metabolic activity of stable multispecies biofilms studied by oxygen microsensors and fluorescence microscopy. Geochim Cosmochim Acta 72: 5251-5265.
-
(2008)
Geochim Cosmochim Acta
, vol.72
, pp. 5251-5265
-
-
Krawczyk-Barsch, E.1
Grossmann, K.2
Arnold, T.3
Hofmann, S.4
Wobus, A.5
-
21
-
-
0026063142
-
Optical sectioning of microbial biofilms
-
Lawrence, J.R., Korber, D.R., Hoyle, B.D., Costerton, J.W., and Caldwell, D.E. (1991) Optical sectioning of microbial biofilms. J Bacteriol 173: 6558-6567.
-
(1991)
J Bacteriol
, vol.173
, pp. 6558-6567
-
-
Lawrence, J.R.1
Korber, D.R.2
Hoyle, B.D.3
Costerton, J.W.4
Caldwell, D.E.5
-
22
-
-
0026447749
-
NMR imaging of hydrodynamics near microbially colonized surfaces
-
Lewandowski, Z., Altobelli, S., Majors, P., and Fukushima, E. (1992) NMR imaging of hydrodynamics near microbially colonized surfaces. Water Sci Technol 26: 577-584.
-
(1992)
Water Sci Technol
, vol.26
, pp. 577-584
-
-
Lewandowski, Z.1
Altobelli, S.2
Majors, P.3
Fukushima, E.4
-
23
-
-
0027341840
-
NMR and microelectrode studies of hydrodynamics and kinetics in biofilms
-
Lewandowski, Z., Altobelli, S., and Fukushima, E. (1993) NMR and microelectrode studies of hydrodynamics and kinetics in biofilms. Biotechnol Prog 9: 40-45.
-
(1993)
Biotechnol Prog
, vol.9
, pp. 40-45
-
-
Lewandowski, Z.1
Altobelli, S.2
Fukushima, E.3
-
24
-
-
13244255197
-
Time course observation of nitrifying biofilm development using microelectrodes
-
Li, J., and Bishop, P. (2004) Time course observation of nitrifying biofilm development using microelectrodes. J Environ Eng Sci 3: 523-528.
-
(2004)
J Environ Eng Sci
, vol.3
, pp. 523-528
-
-
Li, J.1
Bishop, P.2
-
25
-
-
38949156935
-
Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy
-
McLean, J., Ona, O., and Majors, P. (2008a) Correlated biofilm imaging, transport and metabolism measurements via combined nuclear magnetic resonance and confocal microscopy. ISME J 2: 121-131.
-
(2008)
ISME J
, vol.2
, pp. 121-131
-
-
McLean, J.1
Ona, O.2
Majors, P.3
-
26
-
-
43649094564
-
Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms
-
McLean, J.S., Majors, P.D., Reardon, C.L., Bilskis, C.L., Reed, S.B., Romine, M.F., and Fredrickson, J.K. (2008b) Investigations of structure and metabolism within Shewanella oneidensis MR-1 biofilms. J Microbiol Methods 74: 47-56.
-
(2008)
J Microbiol Methods
, vol.74
, pp. 47-56
-
-
McLean, J.S.1
Majors, P.D.2
Reardon, C.L.3
Bilskis, C.L.4
Reed, S.B.5
Romine, M.F.6
Fredrickson, J.K.7
-
27
-
-
28244496460
-
NMR methods for in-situ biofilm metabolism studies: spatial and temporal resolved measurements
-
Majors, P.D., McLean, J.S., Fredrickson, J.K., and Wind, R.A. (2005a) NMR methods for in-situ biofilm metabolism studies: spatial and temporal resolved measurements. Water Sci Technol 52: 7-12.
-
(2005)
Water Sci Technol
, vol.52
, pp. 7-12
-
-
Majors, P.D.1
McLean, J.S.2
Fredrickson, J.K.3
Wind, R.A.4
-
28
-
-
23744440009
-
NMR methods for in situ biofilm metabolism studies
-
Majors, P.D., McLean, J.S., Pinchuk, G.E., Fredrickson, J.K., Gorby, Y.A., Minard, K.R., and Wind, R.A. (2005b) NMR methods for in situ biofilm metabolism studies. J Microbiol Methods 62: 337-344.
-
(2005)
J Microbiol Methods
, vol.62
, pp. 337-344
-
-
Majors, P.D.1
McLean, J.S.2
Pinchuk, G.E.3
Fredrickson, J.K.4
Gorby, Y.A.5
Minard, K.R.6
Wind, R.A.7
-
29
-
-
33747343634
-
c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis
-
Marshall, M., Beliaev, A., Dohnalkova, A., Kennedy, D., Shi, L., Wang, Z., etal. (2006) c-Type cytochrome-dependent formation of U(IV) nanoparticles by Shewanella oneidensis. PLoS Biol 4: 1324-1333.
-
(2006)
PLoS Biol
, vol.4
, pp. 1324-1333
-
-
Marshall, M.1
Beliaev, A.2
Dohnalkova, A.3
Kennedy, D.4
Shi, L.5
Wang, Z.6
-
30
-
-
0034547593
-
Role of commensal relationships on the spatial structure of a surface-attached microbial consortium
-
Nielsen, A.T., Tolker-Nielsen, T., Barken, K.B., and Molin, S. (2000) Role of commensal relationships on the spatial structure of a surface-attached microbial consortium. Environ Microbiol 2: 59-68.
-
(2000)
Environ Microbiol
, vol.2
, pp. 59-68
-
-
Nielsen, A.T.1
Tolker-Nielsen, T.2
Barken, K.B.3
Molin, S.4
-
31
-
-
40549126258
-
Tolerance to the antimicrobial peptide colistin in Pseudomonas aeruginosa biofilms is linked to metabolically active cells, and depends on the pmr and mexAB-oprM genes
-
Pamp, S.J., Gjermansen, M., Johansen, H.K., and Tolker-Nielsen, T. (2008) Tolerance to the antimicrobial peptide colistin in Pseudomonas aeruginosa biofilms is linked to metabolically active cells, and depends on the pmr and mexAB-oprM genes. Mol Microbiol 68: 223-240.
-
(2008)
Mol Microbiol
, vol.68
, pp. 223-240
-
-
Pamp, S.J.1
Gjermansen, M.2
Johansen, H.K.3
Tolker-Nielsen, T.4
-
32
-
-
0024053538
-
A constant-depth laboratory model film fermentor
-
Peters, A.C., and Wimpenny, J.W.T. (1988) A constant-depth laboratory model film fermentor. Biotechnol Bioeng 32: 263-270.
-
(1988)
Biotechnol Bioeng
, vol.32
, pp. 263-270
-
-
Peters, A.C.1
Wimpenny, J.W.T.2
-
33
-
-
49449116099
-
Magnetic resonance imaging of structure, diffusivity, and copper immobilization in a phototrophic biofilm
-
Phoenix, V., and Holmes, W. (2008) Magnetic resonance imaging of structure, diffusivity, and copper immobilization in a phototrophic biofilm. Appl Environ Microbiol 74: 4934-4943.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 4934-4943
-
-
Phoenix, V.1
Holmes, W.2
-
34
-
-
54749103194
-
Growing oral biofilms in a constant depth film fermenter (CDFF)
-
Pratten, J. (2007) Growing oral biofilms in a constant depth film fermenter (CDFF). Curr Protoc Microbiol 6: 1B.5.1-1B.5.18.
-
(2007)
Curr Protoc Microbiol
, vol.6
-
-
Pratten, J.1
-
35
-
-
0032486744
-
Microelectrode measurements of local mass transport rates in heterogeneous biofilms
-
Rasmussen, K., and Lewandowski, Z. (1998) Microelectrode measurements of local mass transport rates in heterogeneous biofilms. Biotechnol Bioeng 59: 302-309.
-
(1998)
Biotechnol Bioeng
, vol.59
, pp. 302-309
-
-
Rasmussen, K.1
Lewandowski, Z.2
-
36
-
-
77955675188
-
In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance
-
Renslow, R.S., Majors, P.D., McLean, J.S., Fredrickson, J.K., Ahmed, B., and Beyenal, H. (2010) In situ effective diffusion coefficient profiles in live biofilms using pulsed-field gradient nuclear magnetic resonance. Biotechnol Bioeng 106: 928-937.
-
(2010)
Biotechnol Bioeng
, vol.106
, pp. 928-937
-
-
Renslow, R.S.1
Majors, P.D.2
McLean, J.S.3
Fredrickson, J.K.4
Ahmed, B.5
Beyenal, H.6
-
37
-
-
77953175665
-
Spatiotemporal activity of the mshA gene system in Shewanella oneidensis MR-1 biofilms
-
Saville, R., Dieckmann, N., and Spormann, A. (2010) Spatiotemporal activity of the mshA gene system in Shewanella oneidensis MR-1 biofilms. FEMS Microbiol Lett 308: 76-83.
-
(2010)
FEMS Microbiol Lett
, vol.308
, pp. 76-83
-
-
Saville, R.1
Dieckmann, N.2
Spormann, A.3
-
38
-
-
0032851953
-
Distribution of bacterial growth activity in flow-chamber biofilms
-
Sternberg, C., Christensen, B.B., Johansen, T., Nielsen, A.T., Andersen, J.B., Givskov, M., and Molin, S. (1999) Distribution of bacterial growth activity in flow-chamber biofilms. Appl Environ Microbiol 65: 4108-4117.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4108-4117
-
-
Sternberg, C.1
Christensen, B.B.2
Johansen, T.3
Nielsen, A.T.4
Andersen, J.B.5
Givskov, M.6
Molin, S.7
-
39
-
-
33846561094
-
Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling
-
Tang, Y.J., Meadows, A.L., Kirby, J., and Keasling, J.D. (2007a) Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling. J Bacteriol 189: 894-901.
-
(2007)
J Bacteriol
, vol.189
, pp. 894-901
-
-
Tang, Y.J.1
Meadows, A.L.2
Kirby, J.3
Keasling, J.D.4
-
40
-
-
33846912964
-
Shewanella oneidensis MR-1 fluxome under various oxygen conditions
-
Tang, Y.J., Hwang, J.S., Wemmer, D.E., and Keasling, J.D. (2007b) Shewanella oneidensis MR-1 fluxome under various oxygen conditions. Appl Environ Microbiol 73: 718-729.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 718-729
-
-
Tang, Y.J.1
Hwang, J.S.2
Wemmer, D.E.3
Keasling, J.D.4
-
41
-
-
33751003257
-
Spatiometabolic stratification of Shewanella oneidensis biofilms
-
Teal, T., Lies, D., Wold, B., and Newman, D. (2006) Spatiometabolic stratification of Shewanella oneidensis biofilms. Appl Environ Microbiol 72: 7324-7330.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7324-7330
-
-
Teal, T.1
Lies, D.2
Wold, B.3
Newman, D.4
-
42
-
-
84857442705
-
Detection of biological uranium reduction using magnetic resonance
-
Vogt, S.J., Stewart, B.D., Seymour, J.D., Peyton, B.M., and Codd, S.L. (2012) Detection of biological uranium reduction using magnetic resonance. Biotechnol Bioengr 109: 877-883.
-
(2012)
Biotechnol Bioengr
, vol.109
, pp. 877-883
-
-
Vogt, S.J.1
Stewart, B.D.2
Seymour, J.D.3
Peyton, B.M.4
Codd, S.L.5
-
43
-
-
8144221775
-
Stratified growth in Pseudomonas aeruginosa biofilms
-
Werner, E., Roe, F., Bugnicourt, A., Franklin, M., Heydorn, A., Molin, S., etal. (2004) Stratified growth in Pseudomonas aeruginosa biofilms. Appl Environ Microbiol 70: 6188-6196.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6188-6196
-
-
Werner, E.1
Roe, F.2
Bugnicourt, A.3
Franklin, M.4
Heydorn, A.5
Molin, S.6
-
44
-
-
0028040158
-
Multicellular organization in a degradative biofilm community
-
Wolfaardt, G.M., Lawrence, J.R., Robarts, R.D., Caldwell, S.J., and Caldwell, D.E. (1994) Multicellular organization in a degradative biofilm community. Appl Environ Microbiol 60: 434-446.
-
(1994)
Appl Environ Microbiol
, vol.60
, pp. 434-446
-
-
Wolfaardt, G.M.1
Lawrence, J.R.2
Robarts, R.D.3
Caldwell, S.J.4
Caldwell, D.E.5
-
45
-
-
0031804537
-
Stratification of microbial metabolic processes and redox potential change in an aerobic biofilm studied using microelectrodes
-
Yu, T., and Bishop, P. (1998) Stratification of microbial metabolic processes and redox potential change in an aerobic biofilm studied using microelectrodes. Water Sci Technol 37: 195-198.
-
(1998)
Water Sci Technol
, vol.37
, pp. 195-198
-
-
Yu, T.1
Bishop, P.2
|