Relationship between microbial activity and microbial community structure in six full-scale anaerobic digesters

Microbiological Research

Volumn 167, Issue 10, 2012, Pages 581-589

  Regueiro, Leticia ^a   Veiga, Patricia ^a   Figueroa, Mónica ^a   Alonso Gutierrez, Jorge ^a   Stams, Alfons J M ^b   Lema, Juan M ^a   Carballa, Marta ^a  

^a UNIVERSITY OF SANTIAGO DE COMPOSTELA   (Spain)

^b WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

Anaerobic ecology; Bacteroidetes; Denaturing gradient gel electrophoresis; Fluorescence in situ hybridization; Methanosaeta

Indexed keywords

ACIDOGENIC; ANAEROBIC BIOMASS; ANAEROBIC DIGESTER; ANAEROBIC MICROBIAL COMMUNITY; ARCHAEA; BACTEROIDETES; DENATURING GRADIENT GEL ELECTROPHORESES (DGGE); FLUORESCENCE IN SITU HYBRIDIZATION; HIGH ACTIVITY; METHANOGENIC ACTIVITY; METHANOSAETA; MICROBIAL ACTIVITIES; MICROBIAL COMMUNITY STRUCTURES; MOLECULAR TOOLS;

ANAEROBIC DIGESTION; BIOMASS; ELECTROPHORESIS; FLUORESCENCE MICROSCOPY; PULP DIGESTERS; SOCIAL SCIENCES;

MICROORGANISMS;

ANOXIC CONDITIONS; BACTERIUM; BIODEGRADATION; BIOMASS; BIOREACTOR; COMMUNITY STRUCTURE; ELECTROKINESIS; FLUORESCENCE; HYDROLYSIS; METHANOGENESIS; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; REACTION KINETICS;

ANAEROBIC GROWTH; ARCHAEON; ARTICLE; BACTEROIDETES; BIOMASS; BIOREACTOR; EURYARCHAEOTA; GENETICS; METABOLISM; MICROBIOLOGY;

ANAEROBIOSIS; ARCHAEA; BACTEROIDETES; BIOMASS; BIOREACTORS; EURYARCHAEOTA;

ARCHAEA; BACTEROIDETES; METHANOSAETA;

EID: 84867900820     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2012.06.002     Document Type: Article

References (43)

1. Alonso-Gutierrez J., Figueiras A., Albaigués J., Jiménez N., Viñas M., Solanas A.M., et al. Bacterial communities from shoreline environments (Costa da Morte Northwestern Spain) affected by the prestige oil spill. Appl Environ Microbiol 2009, 75:3407-3418.
2. Alvarez J.A., Otero L., Lema J.M. A methodology for optimising feed composition for anaerobic co-digestion of agro-industrial wastes. Bioresour Technol 2010, 101:1153-1158.
3. Amann R.I., Ludwig W., Schleifer K.H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 1995, 59:143-169.
4. Angelidaki I., Alves M., Bolzonella D., Borzacconi L., Guwy A., Kalyuzhnyi S., et al. Defining the biomethane potential (BMP) of solid organic wastes: a proposed protocol for batch assays. Water Sci Technol 2009, 59:927-934.
5. APHA Standard methods for the examination of water and wastewater 1998, American Public Health Association, Washington, DC. L.S. Clesceri, A.E. Greenberg, A.D. Eaton (Eds.).
6. Ariesyady H.D., Ito T., Okabe S. Functional bacterial and archaeal community structures of major trophic groups in a full-scale anaerobic sludge digester. Water Res 2007, 41:1554-1568.
7. Carballa M., Smits M., Etchebehere C., Boon N., Verstraete W. Correlations between molecular and operational parameters in anaerobic lab-scale continuous stirred tank reactors. Appl Microbiol Biotechnol 2011, 89(2):303-314.
8. Chouari R., Le Paslier D., Daegelen P., Ginestet P., Weissenbach J., Sghir A. Novel predominant archaeal and bacterial groups revealed by molecular analysis of an anaerobic sludge digester. Environ Microbiol 2005, 7(8):1104-1115.
9. Colleran E.C., Golden T., Geoghegan F., Crumlish B.K., Henry M., Coates J. Use of methanogenic activity tests to characterize anaerobic sludges, screen for anaerobic biodegradability and determine toxicity thresholds against individual anaerobic trophic groups and species. Water Sci Technol 1992, 25(7):31-40.
10. Daims H., Lücker S., Wagner M. Daime, a novel image analysis program for microbial ecology and biofilm research. Environ Microbiol 2006, 8:200-213.
11. Delbès C., Moletta R., Godon J.J. Monitoring of activity dynamics of an anaerobic digester bacterial community using 16S rRNA PCR-single-strand conformation polymorphism analysis (SSCP). Environ Microbiol 2000, 5:506-515.
12. Donoso-Bravo A., Retamal C., Carballa M., Ruiz-Filippi G., Chamy R. Influence of temperature on hydrolysis, acidogenesis and methanogenesis in anaerobic digestion: parameter identification and modeling application. Water Sci Technol 2009, 60(1):9-17.
13. Dubois M., Gilles K.A., Hamilton J.K., Smith F. Colorimetric method for determination of sugar and related substances. Anal Chem 1956, 28(3):350-355.
14. Escudié R., Cresson R., Delgenès J.P., Bernet N. Control of start-up and operation of anaerobic biofilm reactors: an overview of 15 years of research. Water Res 2011, 45(1):1-10.
15. Fang H.H.P., Chui H.K., Li Y.Y., Chen T. Performance and granule characteristics of UASB process treating wastewater with hydrolyzed protein. Water Sci Technol 1994, 30(8):55-63.
16. Hansen K.H., Ahring B.K., Raskin L. Quantification of syntrophic fatty acid-b-oxidizing bacteria in a mesophilic biogas reactor by oligonucleotide probe hybridization. Appl Environ Microbiol 1999, 65:4767-4774.
17. Klocke M. Monitoring microbial communities in biogas plants. 1st International Conference in Biogas Microbiology 2011.
18. LaPara T.M., Nakatsu C.H., Pantea L.M., Alleman J.E. Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCRDGGE. Water Res 2002, 36:638-646.
19. Lettinga G. Anaerobic digestion and wastewater treatment systems. Antonie Leeuwenhoek 1995, 67:3-28.
20. Lopes W.S., Leite V.D., Prasad S. Influence of inoculums on performance of anaerobic reactors for treating municipal solid waste. Bioresour Technol 2004, 94:261-266.
21. Marzorati M., Wittebolle L., Boon N., Daffonchio D., Verstraete W How to get more out of molecular fingerprints: practical tools for microbial ecology. Environ Microbiol 2008, 10:1571-1581.
22. McMahon K.D., Zheng D., Stams A.J.M., Mackie R.I., Raskin L. Microbial population dynamics during start-up and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge. Biotechnol Bioeng 2004, 87:823-834.
23. Montero B., Garcia-Morales J.L., Sales D., Solera R. Analysis of methanogenic activity in a thermophilic-dry reactor: use of fluorescent in situ hybridization. Waste Manage 2009, 29:1144-1151.
24. Nelson M.C., Morrison M., Yu Z. A meta-analysis of the microbial diversity observed in anaerobic digesters. Bioresour Technol 2011, 102:3730-3739.
25. Nettmann E., Bergmann I., Pramschu S., Mundt K., Plogsties V., Herrmann C., et al. Polyphasic analyses of methanogenic archaeal communities in agricultural biogas plants. Appl Environ Microbiol 2010, 76(8):2540-2548.
26. Puñal A., Méndez-Pampín R.J., Lema J.M. The multi-fed upflow anaerobic filter: development and features. J Environ Eng 1999, 68(3):293-300.
27. Pycke B.F.G., Etchebehere C., Van de Caveye P., Negroni A., Verstraete W., Boon N. A time-course analysis of four full-scale anaerobic digesters in relation to the dynamics of change of their microbial communities. Water Sci Technol 2011, 63(4):769-775.
28. Raskin L., Stromley J.M., Rittmann B.R., Stahl D. Group-specific 16SrRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol 1994, 60:1232-1240.
29. Rivière D., Desvignes V., Pelletier E., Chaussonnerie S., Guermazi S., Weissenbach J., et al. Towards the definition of a core of microorganisms involved in anaerobic digestion of sludge. ISME J 2009, 3:700-714.
30. San Pedro D.C., Mino T., Matsuo T. Evaluation of the rate of hydroysis of slowly biodegradable COD (Sbcod) using as substrate under anaerobic, anoxic and aerobic conditions. Water Sci Technol 1994, 30(11):191-199.
31. Sayed S.K.I., van der Zanden J., Wijiffels R., Lettinga G. Anaerobic degradation of the various fractions of slaughterhouse wastewater. Biol Waste 1988, 23:117-142.
32. Sekiguchi Y., Takahashi H., Kamagata Y., Ohashi A., Harada H. In situ detection, isolation, and physiological properties of a thin filamentous microorganism abundant in methanogenic granular sludges: a novel isolate affiliated with a clone cluster, the green non sulfur bacteria, subdivision I. Appl Environ Microbiol 2001, 67:5740-5749.
33. Soto M., Mendez R., Lema J.M. Methanogenic and non-methanogenic activity tests - theoretical basis and experimental set-up. Water Res 1993, 27(8):1361-1376.
34. Sousa D.Z., Pereira M.A., Smidt H., Stams A.J.M., Alves M.M. Molecular assessment of complex microbial communities degrading long chain fatty acids in methanogenic bioreactors. FEMS Microbiol Ecol 2007, 60:252-265.
35. Stams A.J.M. Metabolic interactions between anaerobic bacteria in methanogenic environments. Int J Gen Mol Microbiol 1994, 66:271-294.
36. Talbot G., Topp E., Palin M.F., Masse D.I. Evaluation of molecular methods used for establishing the interactions and functions of microorganisms in anaerobic bioreactors. Water Res 2008, 42:513-537.
37. van Haandel A.C., Lettinga G. Anaerobic sewage treatment: a practical guide for regions with a hot climate 1994, John Wiley & Sons Ltd, Chichester, England, p. 226.
38. Vavilin V.A., Fernandez B., Palatsi J., Flotats X. Hydrolysis kinetics in anaerobic degradation of particulate organic material: an overview. Waste Manage 2008, 28(6):939-951.
39. Wang H., Tolvanen K., Lehtomäki A., Puhakka J., Rintala J. Microbial community structure in anaerobic co-digestion of grass silage and cow manure in a laboratory continuously stirred tank reactor. Biodegradation 2010, 21(1):135-146.
40. Wittebolle L., Marzorati M., Clement L., Balloi A., Daffonchio D., Heylen K., et al. Initial community evenness favours functionality under selective stress. Nature 2009, 458:623-626.
41. Wittebolle L., van Vooren N., Verstraete W., Boon N. High reproducibility of ammonia-oxidizing bacterial communities in parallel sequential batch reactors. J Appl Microbiol 2009, 107(2):385-394.
42. Wittebolle L., Verstraete W., Boon N. The inoculum effect on the ammonia-oxidizing bacterial communities in parallel sequential batch reactors. Water Res 2009, 43(17):4149-4158.
43. Zhu C., Zhang J., Tang Y., Zhengkai X., Song R. Diversity of methanogenic archaea in a biogas reactor fed with swine feces as the mono-substrate by mcrA analysis. Microbiol Res 2011, 166:27-35.