JAK-STAT signalling as example for a database-supported modular modelling concept

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 7605 LNBI, Issue , 2012, Pages 362-365

  Blätke, Mary Ann ^a   Dittrich, Anna ^a   Heiner, Monika ^b   Schaper, Fred ^a   Marwan, Wolfgang ^a  

^a OTTO VON GUERICKE UNIVERSITY   (Germany)

^b BRANDENBURG UNIVERSITY OF TECHNOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

DETAILED MODELS; EXECUTABLE MODEL; INDIVIDUAL PROTEINS; MODULAR MODELING METHODS; MODULAR MODELLING; NON-TRIVIAL;

COMPUTATIONAL METHODS; PETRI NETS;

MODELS;

EID: 84867840678     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-33636-2_21     Document Type: Conference Paper

References (5)

1. Blätke, M., et al.: JAK/STAT signalling - an executable model assembled from molecule-centred modules demonstrating a module-oriented database concept for systems- and synthetic biology (submitted, 2012), http://arxiv.org/abs/1206.0959v1
2. Franzke, A.: Charlie 2.0 - a multi-threaded Petri net analyzer. Diploma thesis, BTU Cottbus, Dep. of CS (December 2009)
3. Heiner, M., Gilbert, D., Donaldson, R.: Petri Nets for Systems and Synthetic Biology. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, vol. 5016, pp. 215-264. Springer, Heidelberg (2008)
4. Heinrich, P., et al.: Principles of interleukin (il)-6-type cytokine signalling and its regulation. Biochemical Journal 374, 1-20 (2003)
5. Rohr, C., Marwan, W., Heiner, M.: Snoopy - a unifying Petri net framework to investigate biomolecular networks. Bioinformatics 26(7), 974-975 (2010)