-
1
-
-
33645870422
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast
-
Apr. [Online].
-
D.-K. Ro, E. M. Paradise, M. Ouellet, K. J. Fisher, K. L. Newman, J. M. Ndungu, K. A. Ho, R. A. Eachus, T. S. Ham, J. Kirby, M. C. Y. Chang, S. T. Withers, Y. Shiba, R. Sarpong, and J. D. Keasling. (2012, Apr.). Production of the antimalarial drug precursor artemisinic acid in engineered yeast. Nature. [Online]. 440(7086), pp. 940-943. Available: http://dx.doi.org/10.1038/ nature04640.
-
(2012)
Nature
, vol.440
, Issue.7086
, pp. 940-943
-
-
Ro, D.-K.1
Paradise, E.M.2
Ouellet, M.3
Fisher, K.J.4
Newman, K.L.5
Ndungu, J.M.6
Ho, K.A.7
Eachus, R.A.8
Ham, T.S.9
Kirby, J.10
Chang, M.C.Y.11
Withers, S.T.12
Shiba, Y.13
Sarpong, R.14
Keasling, J.D.15
-
2
-
-
29144482539
-
Environmentally controlled invasion of cancer cells by engineered bacteria
-
Apr. [Online].
-
J. C. Anderson, E. J. Clarke, A. P. Arkin, and C. A. Voigt. (2012, Apr.). Environmentally controlled invasion of cancer cells by engineered bacteria. J. Mol. Biol. [Online]. 355(4), pp. 619-627. Available: http://dx.doi.org/10.1016/ j.jmb.2005.10.076.
-
(2012)
J. Mol. Biol.
, vol.355
, Issue.4
, pp. 619-627
-
-
Anderson, J.C.1
Clarke, E.J.2
Arkin, A.P.3
Voigt, C.A.4
-
3
-
-
77952515515
-
Synthetic biology: Designer bacteria degrades toxin
-
Apr. [Online].
-
J. R. Kirby. (2012, Apr.). Synthetic biology: Designer bacteria degrades toxin. Nature Chemical Biology. [Online]. 6(6), pp. 398-399. Available: http://dx.doi.org/10.1038/nchembio.378.
-
(2012)
Nature Chemical Biology
, vol.6
, Issue.6
, pp. 398-399
-
-
Kirby, J.R.1
-
4
-
-
38049001166
-
Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels
-
Jan.
-
S. Atsumi, T. Hanai, and J. C. Liao, "Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels," Nature, vol. 451, pp. 86-89, Jan. 2008.
-
(2008)
Nature
, vol.451
, pp. 86-89
-
-
Atsumi, S.1
Hanai, T.2
Liao, J.C.3
-
5
-
-
67651219110
-
Engineering bacterial signals and sensors
-
H. Salis, A. Tamsir, and C. Voigt, "Engineering bacterial signals and sensors," Contrib. Microbiol. vol. 16, pp. 194-225, 2009.
-
(2009)
Contrib. Microbiol.
, vol.16
, pp. 194-225
-
-
Salis, H.1
Tamsir, A.2
Voigt, C.3
-
6
-
-
68949161807
-
Programming cells by multiplex genome engineering and accelerated evolution
-
Apr. [Online].
-
H. H. Wang, F. J. Isaacs, P. A. Carr, Z. Z. Sun, G. Xu, C. R. Forest, and G. M. Church. (2012, Apr.). Programming cells by multiplex genome engineering and accelerated evolution. Nature. [Online]. 460(7257), pp. 894-898. Available: http://dx.doi.org/10.1038/nature08187.
-
(2012)
Nature
, vol.460
, Issue.7257
, pp. 894-898
-
-
Wang, H.H.1
Isaacs, F.J.2
Carr, P.A.3
Sun, Z.Z.4
Xu, G.5
Forest, C.R.6
Church, G.M.7
-
8
-
-
78651397316
-
Robust multicellular computing using genetically encoded NOR gates and chemical/'wires/'
-
Apr. [Online].
-
A. Tamsir, J. J. Tabor, and C. A. Voigt. (2012, Apr.). Robust multicellular computing using genetically encoded NOR gates and chemical/'wires/'. Nature. [Online]. 469(7329), pp. 212-215. Available: http://dx.doi.org/10.1038/nature09565.
-
(2012)
Nature
, vol.469
, Issue.7329
, pp. 212-215
-
-
Tamsir, A.1
Tabor, J.J.2
Voigt, C.A.3
-
9
-
-
77649305316
-
BglBricks: A flexible standard for biological part assembly
-
Apr. [Online].
-
J. C. Anderson, J. E. Dueber, M. Leguia, G. C. Wu, J. A. Goler, A. P. Arkin, and J. D. Keasling. (2012, Apr.). BglBricks: A flexible standard for biological part assembly. J. Biol. Eng. [Online]. 4(1), pp. 1+. Available: http://dx.doi.org/10.1186/1754-1611-4-1.
-
(2012)
J. Biol. Eng.
, vol.4
, Issue.1
-
-
Anderson, J.C.1
Dueber, J.E.2
Leguia, M.3
Wu, G.C.4
Goler, J.A.5
Arkin, A.P.6
Keasling, J.D.7
-
10
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Apr. [Online].
-
D. G. Gibson, L. Young, R.-Y. Y. Chuang, J. C. Venter, C. A. Hutchison, and H. O. Smith. (2012, Apr.). Enzymatic assembly of DNA molecules up to several hundred kilobases. Nature Meth. [Online]. 6(5), pp. 343-345. Available: http://dx.doi.org/10.1038/nmeth.1318.
-
(2012)
Nature Meth.
, vol.6
, Issue.5
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.-Y.Y.3
Venter, J.C.4
Hutchison, C.A.5
Smith, H.O.6
-
11
-
-
79961137158
-
Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks
-
Apr. [Online].
-
J. Beal, T. Lu, and R. Weiss. (2012, Apr.). Automatic compilation from high-level biologically-oriented programming language to genetic regulatory networks. PLoS ONE. [Online]. 6(8), pp. e22490+. Available: http://dx.doi.org/ 10.1371/journal.pone.0022490.
-
(2012)
PLoS ONE.
, vol.6
, Issue.8
-
-
Beal, J.1
Lu, T.2
Weiss, R.3
-
12
-
-
79955710914
-
Eugene A domain specific language for specifying and constraining synthetic biological parts, devices, and systems
-
Apr. [Online].
-
L. Bilitchenko, A. Liu, S. Cheung, E. Weeding, B. Xia, M. Leguia, J. C. Anderson, and D. Densmore. (2012, Apr.). Eugene A domain specific language for specifying and constraining synthetic biological parts, devices, and systems. PLoS ONE. [Online]. 6(4), pp. e18882+. Available: http://dx.doi.org/10.1371/ journal.pone.0018882.
-
(2012)
PLoS ONE.
, vol.6
, Issue.4
-
-
Bilitchenko, L.1
Liu, A.2
Cheung, S.3
Weeding, E.4
Xia, B.5
Leguia, M.6
Anderson, J.C.7
Densmore, D.8
-
13
-
-
67650663955
-
Towards programming languages for genetic engineering of living cells
-
Apr. [Online].
-
M. Pedersen and A. Phillips. (2012, Apr.). Towards programming languages for genetic engineering of living cells. J. Roy. Soc. Interface. [Online]. 6(Suppl 4), pp. S437-S450. Available: http://dx.doi.org/10.1098/rsif.2008.0516. focus.
-
(2012)
J. Roy. Soc. Interface.
, vol.6
, Issue.SUPPL. 4
-
-
Pedersen, M.1
Phillips, A.2
-
14
-
-
79953769431
-
Retroactivity attenuation in bio-molecular systems based on timescale separation
-
S. Jayanthi and D. D. Vecchio, "Retroactivity attenuation in bio-molecular systems based on timescale separation," IEEE Trans. Automat. Control, vol. 56, no. 4, pp. 748-761, 2011.
-
(2011)
IEEE Trans. Automat. Control
, vol.56
, Issue.4
, pp. 748-761
-
-
Jayanthi, S.1
Vecchio, D.D.2
-
15
-
-
62949154042
-
Design and performance of in vitro transcription rate regulatory circuits
-
Dec.
-
E. Franco and R. Murray, "Design and performance of in vitro transcription rate regulatory circuits," in Proc. 47th IEEE Conf. Dec. Contr., 2008. CDC 2008., Dec. 2008, pp. 161-166.
-
(2008)
Proc. 47th IEEE Conf. Dec. Contr., 2008. CDC 2008.
, pp. 161-166
-
-
Franco, E.1
Murray, R.2
-
16
-
-
77952521393
-
Algorithms for automated DNA assembly
-
Apr. [Online].
-
D. Densmore, T. H. C. Hsiau, J. T. Kittleson, W. DeLoache, C. Batten, and J. C. Anderson. (2012, Apr.). Algorithms for automated DNA assembly. Nucleic Acids Res. [Online]. 38(8), pp. 2607-2616. Available: http://dx.doi.org/10.1093/ nar/gkq165.
-
(2012)
Nucleic Acids Res.
, vol.38
, Issue.8
, pp. 2607-2616
-
-
Densmore, D.1
Hsiau, T.H.C.2
Kittleson, J.T.3
Deloache, W.4
Batten, C.5
Anderson, J.C.6
-
17
-
-
75149186930
-
Design and characterization of a three-terminal transcriptional device through polymerase per second
-
Sep
-
P. A. Varadarajan and D. Del Vecchio, "Design and characterization of a three-terminal transcriptional device through polymerase per second," IEEE Trans. Nanobiosci., vol. 8, pp. 281-289, Sep. 2009.
-
(2009)
IEEE Trans. Nanobiosci.
, vol.8
, pp. 281-289
-
-
Varadarajan, P.A.1
Del Vecchio, D.2
-
18
-
-
46949091517
-
Refinement and standardization of synthetic biological parts and devices
-
DOI 10.1038/nbt1413, PII NBT1413
-
B. Canton, A. Labno, and D. Endy. (2012, Apr.). Refinement and standardization of synthetic biological parts and devices. Nature Biotechnol. [Online]. 26(7), pp. 787-793. Available: http://dx.doi.org/10.1038/nbt1413. (Pubitemid 351961452)
-
(2008)
Nature Biotechnology
, vol.26
, Issue.7
, pp. 787-793
-
-
Canton, B.1
Labno, A.2
Endy, D.3
-
19
-
-
71849095864
-
TinkerCell: Modular CAD tool for synthetic biology
-
Apr. [Online].
-
D. Chandran, F. Bergmann, and H. Sauro. (2012, Apr.). TinkerCell: Modular CAD tool for synthetic biology. J. Biol. Eng. [Online]. 3(1), pp. 19+. Available: http://dx.doi.org/10.1186/1754-1611-3-19
-
(2012)
J. Biol. Eng.
, vol.3
, Issue.1
-
-
Chandran, D.1
Bergmann, F.2
Sauro, H.3
-
20
-
-
79957523391
-
SynBioSS-aided design of synthetic biological constructs
-
Apr. [Online].
-
Y. N. Kaznessis. (2012, Apr.). SynBioSS-aided design of synthetic biological constructs. Methods Enzymol. [Online]. 498, pp. 137-152. Available: http://dx.doi.org/10.1016/B978-0-12-385120-8.00006-1.
-
(2012)
Methods Enzymol.
, vol.498
, pp. 137-152
-
-
Kaznessis, Y.N.1
-
21
-
-
67849130568
-
Writing DNA with genoCADTM
-
Apr. [Online].
-
M. J. Czar, Y. Cai, and J. Peccoud. (2012, Apr.).Writing DNA with GenoCADTM. Nucl. Acids Res. [Online]. 37(suppl 2), pp. W40-W47. Available: http://dx.doi.org/10.1093/nar/gkp361.
-
(2012)
Nucl. Acids Res.
, vol.37
, Issue.SUPPL. 2
-
-
Czar, M.J.1
Cai, Y.2
Peccoud, J.3
-
22
-
-
79957442875
-
Developer's and user's guide to clotho v2.0 a software platform for the creation of synthetic biological systems
-
B. Xia, S. Bhatia, B. Bubenheim, M. Dadgar, D. Densmore, and J. Anderson, "Developer's and user's guide to clotho v2.0 a software platform for the creation of synthetic biological systems," Methods Enzymol., vol. 498, 2011.
-
(2011)
Methods Enzymol.
, vol.498
-
-
Xia, B.1
Bhatia, S.2
Bubenheim, B.3
Dadgar, M.4
Densmore, D.5
Anderson, J.6
-
23
-
-
70350669878
-
IBioSim: A tool for the analysis and design of genetic circuits
-
Apr. [Online].
-
C. J. Myers, N. Barker, K. Jones, H. Kuwahara, C. Madsen, and N.-P. P. Nguyen. (2012, Apr.). iBioSim: A tool for the analysis and design of genetic circuits. Bioinformatics. [Online]. 25(21), pp. 2848-2849. Available: http://dx.doi.org/10.1093/bioinformatics/btp457.
-
(2012)
Bioinformatics.
, vol.25
, Issue.21
, pp. 2848-2849
-
-
Myers, C.J.1
Barker, N.2
Jones, K.3
Kuwahara, H.4
Madsen, C.5
Nguyen, N.-P.P.6
-
24
-
-
84859320316
-
J5 dna assembly design automation software
-
Apr. [Online].
-
N. J. Hillson, R. D. Rosengarten, and J. D. Keasling. (2012, Apr.). j5 dna assembly design automation software. ACS Synthetic Biol. [Online]. 1(1), pp. 14-21. Available: http://pubs.acs.org/doi/abs/10.1021/sb2000116.
-
(2012)
ACS Synthetic Biol.
, vol.1
, Issue.1
, pp. 14-21
-
-
Hillson, N.J.1
Rosengarten, R.D.2
Keasling, J.D.3
-
25
-
-
61449140264
-
Promot: Modular modeling for systems biology
-
Apr. [Online].
-
S. Mirschel, K. Steinmetz, M. Rempel, M. Ginkel, and E. D. Gilles. (2012, Apr.). Promot: Modular modeling for systems biology. Bioinformatics. [Online]. 25(5), pp. 687-689. Available: http://bioinformatics. oxfordjournals.org/ content/25/5/687.abstract.
-
(2012)
Bioinformatics.
, vol.25
, Issue.5
, pp. 687-689
-
-
Mirschel, S.1
Steinmetz, K.2
Rempel, M.3
Ginkel, M.4
Gilles, E.D.5
-
26
-
-
45749137679
-
Minimal Eschenchia coli cell for the most efficient production of ethanol from hexoses and pentoses
-
DOI 10.1128/AEM.02708-07
-
C. T. Trinh, P. Unrean, and F. Srienc, "Minimal Escherichia coli cell for the most efficient production of ethanol from hexoses and pentoses," Appl. Environ. Microbiol., vol. 74, pp. 3634-3643, Jun. 2008. (Pubitemid 351874892)
-
(2008)
Applied and Environmental Microbiology
, vol.74
, Issue.12
, pp. 3634-3643
-
-
Trinh, C.T.1
Unrean, P.2
Srienc, F.3
-
27
-
-
75749125061
-
Microbial production of fatty-acid-derived fuels and chemicals from plant biomass
-
Jan.
-
E. J. Steen, Y. Kang, G. Bokinsky, Z. Hu, A. Schirmer, A. McClure, S. B. Del Cardayre, and J. D. Keasling, "Microbial production of fatty-acid-derived fuels and chemicals from plant biomass," Nature, vol. 463, pp. 559-562, Jan. 2010.
-
(2010)
Nature
, vol.463
, pp. 559-562
-
-
Steen, E.J.1
Kang, Y.2
Bokinsky, G.3
Hu, Z.4
Schirmer, A.5
McClure, A.6
Del Cardayre, S.B.7
Keasling, J.D.8
-
28
-
-
79960414910
-
Systems metabolic engineering for chemicals and materials
-
Aug.
-
J. W. Lee, T. Y. Kim, Y. S. Jang, S. Choi, and S. Y. Lee, "Systems metabolic engineering for chemicals and materials," Trends Biotechnol., vol. 29, pp. 370-378, Aug. 2011.
-
(2011)
Trends Biotechnol.
, vol.29
, pp. 370-378
-
-
Lee, J.W.1
Kim, T.Y.2
Jang, Y.S.3
Choi, S.4
Lee, S.Y.5
-
29
-
-
80053394442
-
The original Michaelis constant: Translation of the 1913 Michaelis-Menten paper
-
Apr. [Online]
-
L. Michaelis, M. L. Menten, K. A. Johnson, and R. S. Goody. (2012, Apr.). The original Michaelis constant: Translation of the 1913 Michaelis-Menten paper. Biochemistry. [Online]. 50(39), pp. 8264-8269. Available: http://www.ncbi.nlm.nih.gov/pubmed/21888353.
-
(2012)
Biochemistry.
, vol.50
, Issue.39
, pp. 8264-8269
-
-
Michaelis, L.1
Menten, M.L.2
Johnson, K.A.3
Goody, R.S.4
-
30
-
-
0022493181
-
Fat synthesis in adipose tissue. An examination of stoichiometric constraints
-
D. A. Fell and J. Small, "Fat synthesis in adipose tissue. An examination of stoichiometric constraints," Biochem. J., vol. 238, no. 3, pp. 781-786, Sep. 1986. (Pubitemid 16004713)
-
(1986)
Biochemical Journal
, vol.238
, Issue.3
, pp. 781-786
-
-
Fell, D.A.1
Small, J.R.2
-
31
-
-
9544253891
-
Genome-scale models of microbial cells: Evaluating the consequences of constraints
-
DOI 10.1038/nrmicro1023
-
N. Price, J. Reed, and B. Palsson, "Genome-scale models of microbial cells: Evaluating the consequences of constraints," Nature Rev. Microbiol., vol. 2, no. 11, pp. 886-897, 2004. (Pubitemid 39567269)
-
(2004)
Nature Reviews Microbiology
, vol.2
, Issue.11
, pp. 886-897
-
-
Price, N.D.1
Reed, J.L.2
Palsson, B.O.3
-
32
-
-
0000029295
-
On elementary flux modes in biochemical reaction systems at steady state
-
Apr. [Online].
-
S. Schuster and C. Hlgetag. (2012, Apr.). On elementary flux modes in biochemical reaction systems at steady state. J. Biol. Syst. [Online]. 2(2), pp. 165-182. Available: http://wwwback.jacobs-university.de/imperia/md/content/ groups/schools/ses/chilgetag/schusterhilgetagjbiolsyst1994.pdf.
-
(2012)
J. Biol. Syst.
, vol.2
, Issue.2
, pp. 165-182
-
-
Schuster, S.1
Hlgetag, C.2
-
34
-
-
76349099571
-
An algorithm for identifying dominant-edge metabolic pathways
-
Dig. Tech. Papers
-
E. Ullah, K. Lee, and S. Hassoun, "An algorithm for identifying dominant-edge metabolic pathways," in Proc. IEEE/ACM Int. Conf. Comput.-Aided Design (ICCAD), Dig. Tech. Papers, 2009, pp. 144-150.
-
(2009)
Proc. IEEE/ACM Int. Conf. Comput.-Aided Design (ICCAD)
, pp. 144-150
-
-
Ullah, E.1
Lee, K.2
Hassoun, S.3
-
35
-
-
77954268488
-
PathPred: An enzyme-catalyzed metabolic pathway prediction server
-
Jul.
-
Y. Moriya, D. Shigemizu, M. Hattori, T. Tokimatsu, M. Kotera, S. Goto, and M. Kanehisa, "PathPred: An enzyme-catalyzed metabolic pathway prediction server," Nucleic Acids Res., vol. 38, pp. 138-143, Jul. 2010.
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. 138-143
-
-
Moriya, Y.1
Shigemizu, D.2
Hattori, M.3
Tokimatsu, T.4
Kotera, M.5
Goto, S.6
Kanehisa, M.7
-
36
-
-
8744224466
-
Optstrain: A computational framework for redesign of microbial production systems
-
Apr. [Online].
-
P. Pharkya, A. P. Burgard, and C. D. Maranas. (2012, Apr.). Optstrain: A computational framework for redesign of microbial production systems. Genome Research. [Online]. 14(11), pp. 2367-2376. Available: http://genome.cshlp.org/ content/14/11/2367.abstract.
-
(2012)
Genome Research.
, vol.14
, Issue.11
, pp. 2367-2376
-
-
Pharkya, P.1
Burgard, A.P.2
Maranas, C.D.3
-
37
-
-
79958753912
-
Probabilistic pathway construction
-
Jul.
-
M. Yousofshahi, K. Lee, and S. Hassoun, "Probabilistic pathway construction," Metab. Eng., vol. 13, no. 4, pp. 435-44, Jul. 2011.
-
(2011)
Metab. Eng.
, vol.13
, Issue.4
, pp. 435-444
-
-
Yousofshahi, M.1
Lee, K.2
Hassoun, S.3
-
38
-
-
0037199968
-
Hierarchical organization of modularity in metabolic networks
-
DOI 10.1126/science.1073374
-
E. Ravasz, A. L. Somera, D. A. Mongru, Z. N. Oltvai, and A.-L. Barabasi, "Hierarchical organization of modularity in metabolic networks," Science, vol. 297, no. 5586, pp. 1551-1555, 2002. (Pubitemid 34971002)
-
(2002)
Science
, vol.297
, Issue.5586
, pp. 1551-1555
-
-
Ravasz, E.1
Somera, A.L.2
Mongru, D.A.3
Oltvai, Z.N.4
Barabasi, A.-L.5
-
39
-
-
0034688174
-
Construction of a genetic toggle switch in Escherichia coli
-
DOI 10.1038/35002131
-
T. S. Gardner, C. R. Cantor, and J. J. Collins, "Construction of a genetic toggle switch in Escherichia coli," Nature, vol. 403, no. 6767, pp. 339-42, Jan. 2000. (Pubitemid 30062394)
-
(2000)
Nature
, vol.403
, Issue.6767
, pp. 339-342
-
-
Gardner, T.S.1
Cantor, C.R.2
Collins, J.J.3
-
40
-
-
0034688173
-
A synthetic oscillatory network of transcriptional regulators
-
Apr. [Online].
-
M. B. Elowitz and S. Leibler. (2012, Apr.). A synthetic oscillatory network of transcriptional regulators. Nature. [Online]. 403(6767), pp. 335-338. Available: http://dx.doi.org/10.1038/35002125.
-
(2012)
Nature
, vol.403
, Issue.6767
, pp. 335-338
-
-
Elowitz, M.B.1
Leibler, S.2
|