Insights into the recognition of the human glycome by microbial carbohydrate-binding modules

Current Opinion in Structural Biology

Volumn 22, Issue 5, 2012, Pages 570-577

  Ficko Blean, Elizabeth ^a   Boraston, Alisdair B ^a  

^a UNIVERSITY OF VICTORIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE BINDING PROTEIN; FUCOSE; GALACTOSE; GLYCAN; POLYSACCHARIDE; SIALIC ACID;

BETA SHEET; CRYSTAL STRUCTURE; ENZYME DEGRADATION; ENZYME SPECIFICITY; ENZYME SUBSTRATE; HUMAN; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROTEIN BINDING; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN STRUCTURE; RECEPTOR BINDING; REVIEW; X RAY CRYSTALLOGRAPHY;

ANIMALS; BACTERIA; BACTERIAL PROTEINS; HUMANS; N-ACETYLNEURAMINIC ACID; POLYSACCHARIDES; RECEPTORS, CELL SURFACE;

BACTERIA (MICROORGANISMS); MAMMALIA;

EID: 84867745280     PISSN: 0959440X     EISSN: 1879033X     Source Type: Journal    
DOI: 10.1016/j.sbi.2012.07.009     Document Type: Review

References (39)

1. Boraston A.B., Bolam D.N., Gilbert H.J., Davies G.J. Carbohydrate-binding modules: fine-tuning polysaccharide recognition. Biochem J 2004, 382:769-781.
2. Boraston A.B., Notenboom V., Warren R.A., Kilburn D.G., Rose D.R., Davies G. Structure and ligand binding of carbohydrate-binding module CsCBM6-3 reveals similarities with fucose-specific lectins and "galactose-binding" domains. J Mol Biol 2003, 327:659-669.
3. Cantarel B.L., Coutinho P.M., Rancurel C., Bernard T., Lombard V., Henrissat B. The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics. Nucleic Acids Res 2008, 37:D233-D238.
4. Bolam D.N., Ciruela A., McQueen-Mason S., Simpson P., Williamson M.P., Rixon J.E., Boraston A., Hazlewood G.P., Gilbert H.J. Pseudomonas cellulose-binding domains mediate their effects by increasing enzyme substrate proximity. Biochem J 1998, 331:775-781.
5. Boraston A.B., Ficko-Blean E., Healey M. Carbohydrate recognition by a large sialidase toxin from Clostridium perfringens. Biochemistry 2007, 46:11352-11360.
6. Ficko-Blean E., Boraston A.B. The interaction of a carbohydrate-binding module from a Clostridium perfringens N-acetyl-beta-hexosaminidase with its carbohydrate receptor. J Biol Chem 2006, 281:37748-37757.
7. Ficko-Blean E., Gregg K.J., Adams J.J., Hehemann J.H., Czjzek M., Smith S.P., Boraston A.B. Portrait of an enzyme, a complete structural analysis of a multimodular β-N-acetylglucosaminidase from Clostridium perfringens. J Biol Chem 2009, 284:9876-9884.
8. Boraston A.B., Wang D., Burke R.D. Blood group antigen recognition by a Streptococcus pneumoniae virulence factor. J Biol Chem 2006, 281:35263-35271.
9. Higgins M.A., Abbott D.W., Boulanger M.J., Boraston A.B. Blood group antigen recognition by a solute-binding protein from a serotype 3 strain of Streptococcus pneumoniae. J Mol Biol 2009, 388:299-309.
10. Gregg K.J., Finn R., Abbott D.W., Boraston A.B. Divergent modes of glycan recognition by a new family of carbohydrate-binding modules. J Biol Chem 2008, 283:12604-12613.
11. Lammerts van Bueren A., Finn R., Ausio J., Boraston A.B. Alpha-glucan recognition by a new family of carbohydrate-binding modules found primarily in bacterial pathogens. Biochemistry 2004, 43:15633-15642.
12. Mikami B., Iwamoto H., Malle D., Yoon H.J., Demirkan-Sarikaya E., Mezaki Y., Katsuya Y. Crystal structure of pullulanase: evidence for parallel binding of oligosaccharides in the active site. J Mol Biol 2006, 359:690-707.
13. Lammerts van Bueren A.L., Higgins M., Wang D., Burke R.D., Boraston A.B. Identification and structural basis of binding to host lung glycogen by streptococcal virulence factors. Nat Struct Mol Biol 2007, 14:76-84.
14. Lammerts van Bueren A., Ficko-Blean E., Pluvinage B., Hehemann J.H., Higgins M.A., Deng L., Ogunniyi A.D., Stroeher U.H., El Warry N., Burke R.D., et al. The conformation and function of a multimodular glycogen-degrading pneumococcal virulence factor. Structure 2011, 19:640-651.
15. Machovic M., Janecek S. Starch-binding domains in the post-genome era. Cell Mol Life Sci 2006, 63:2710-2724.
16. Centeno M.S., Goyal A., Prates J.A., Ferreira L.M., Gilbert H.J., Fontes C.M. Novel modular enzymes encoded by a cellulase gene cluster in Cellvibrio mixtus. FEMS Microbiol Lett 2006, 265:26-34.
17. Abbott D.W., Eirin-Lopez J.M., Boraston A.B. Insight into ligand diversity and novel biological roles for family 32 carbohydrate-binding modules. Mol Biol Evol 2008, 25:155-167.
18. Abbott D.W., Boraston A.B. Specific recognition of saturated and 4,5-unsaturated hexuronate sugars by a periplasmic binding protein involved in pectin catabolism. J Mol Biol 2007, 369:759-770.
19. Abbott D.W., Hrynuik S., Boraston A.B. Identification and characterization of a novel periplasmic polygalacturonic acid binding protein from Yersinia enterolitica. J Mol Biol 2007, 367:1023-1033.
20. Ficko-Blean E., Stuart C.P., Suits M.D., Cid M., Tessier M., Woods R.J., Boraston A.B. Carbohydrate recognition by an architecturally complex α-N-acetylglucosaminidase from Clostridium perfringens. PLoS ONE 2012, 7:e33524.
21. Ficko-Blean E., Boraston A.B. N-acetylglucosamine recognition by a family 32 carbohydrate-binding module from Clostridium perfringens NagH. J Mol Biol 2009, 390:208-220.
22. Ficko-Blean E., Boraston A.B. Structural analysis of a bacterial exo-alpha-D-N-acetylglucosaminidase in complex with an unusual disaccharide found in class III mucin. Glycobiology 2012, 22:590-595.
23. Feil S.C., Lawrence S., Mulhern T.D., Holien J.K., Hotze E.M., Farrand S., Tweten R.K., Parker M.W. Structure of the lectin regulatory domain of the cholesterol-dependent cytolysin lectinolysin reveals the basis for its lewis antigen specificity. Structure 2012, 20:248-258.
24. Higgins M.A., Ficko-Blean E., Meloncelli P.J., Lowary T.L., Boraston A.B. The overall architecture and receptor binding of pneumococcal carbohydrate-antigen-hydrolyzing enzymes. J Mol Biol 2011, 411:1017-1036.
25. Manco S., Hernon F., Yesilkaya H., Paton J.C., Andrew P.W., Kadioglu A. Pneumococcal neuraminidases A and B both have essential roles during infection of the respiratory tract and sepsis. Infect Immun 2006, 74:4014-4020.
26. Parker D., Soong G., Planet P., Brower J., Ratner A.J., Prince A. The NanA neuraminidase of Streptococcus pneumoniae is involved in biofilm formation. Infect Immun 2009, 77:3722-3730.
27. Galen J.E., Ketley J.M., Fasano A., Richardson S.H., Wasserman S.S., Kaper J.B. Role of Vibrio cholerae neuraminidase in the function of cholera toxin. Infect Immun 1992, 60:406-415.
28. Crennell S., Garman E., Laver G., Vimr E., Taylor G. Crystal structure of Vibrio cholerae neuraminidase reveals dual lectin-like domains in addition to the catalytic domain. Structure 1994, 2:535-544.
29. Moustafa I., Connaris H., Taylor M., Zaitsev V., Wilson J.C., Kiefel M.J., von Itzstein M., Taylor G. Sialic acid recognition by Vibrio cholerae neuraminidase. J Biol Chem 2004, 279:40819-40826.
30. Connaris H., Crocker P.R., Taylor G.L. Enhancing the receptor affinity of the sialic acid-binding domain of Vibrio cholerae sialidase through multivalency. J Biol Chem 2009, 284:7339-7351.
31. Xu G., Potter J.A., Russell R.J., Oggioni M.R., Andrew P.W., Taylor G.L. Crystal structure of the NanB sialidase from Streptococcus pneumoniae. J Mol Biol 2008, 384:436-449.
32. Santi I., Pezzicoli A., Bosello M., Berti F., Mariani M., Telford J.L., Grandi G., Soriani M. Functional characterization of a newly identified group B Streptococcus pullulanase eliciting antibodies able to prevent alpha-glucans degradation. PLoS ONE 2008, 3:e3787.
33. Bongaerts R.J.M., Heinz H.P., Hadding U., Zysk G. Antigenicity, expression, and molecular characterization of surface-located pullulanase of Streptococcus pneumoniae. Infect Immun 2000, 68:7141-7143.
34. Abbott D.W., Higgins M.A., Hyrnuik S., Pluvinage B., Lammerts van Bueren A., Boraston A.B. The molecular basis of glycogen breakdown and transport in Streptococcus pneumoniae. Mol Microbiol 2010, 77:183-199.
35. Canard B., Garnier T., Saint-Joanis B., Cole S.T. Molecular genetic analysis of the nagH gene encoding a hyaluronidase of Clostridium perfringens. Mol Gen Genet 1994, 243:215-224.
36. Higgins M.A., Whitworth G.E., El Warry N., Randriantsoa M., Samain E., Burke R.D., Vocadlo D.J., Boraston A.B. Differential recognition and hydrolysis of host carbohydrate antigens by Streptococcus pneumoniae family 98 glycoside hydrolases. J Biol Chem 2009, 284:26161-26173.
37. Newstead S.L., Watson J.N., Bennet A.J., Taylor G. Galactose recognition by the carbohydrate-binding module of a bacterial sialidase. Acta Crystallogr D Biol Crystallogr 2005, 61:1483-1491.
38. Adams J.J., Gregg K., Bayer E.A., Boraston A.B., Smith S.P. Structural basis of Clostridium perfringens toxin complex formation. Proc Natl Acad Sci USA 2008, 105:12194-12199.
39. Gut H., King S.J., Walsh M.A. Structural and functional studies of Streptococcus pneumoniae neuraminidase B: an intramolecular trans-sialidase. FEBS Lett 2008.