Sequence-based identification and characterization of nosocomial influenza A(H1N1)pdm09 virus infections

Journal of Hospital Infection

Volumn 82, Issue 3, 2012, Pages 187-193

  Jonges, M ^a,b   Rahamat Langendoen, J ^c   Meijer, A ^a   Niesters, H G ^c   Koopmans, M ^a,b  

^a NATIONAL INSTITUTE FOR PUBLIC HEALTH AND THE ENVIRONMENT   (Netherlands)

^b ERASMUS MEDICAL CENTER   (Netherlands)

^c UNIVERSITY MEDICAL CENTER GRONINGEN   (Netherlands)

Author keywords

Antiviral resistance; Cluster detection; Nosocomial infection

Indexed keywords

HEMAGGLUTININ; VIRUS SIALIDASE;

ARTICLE; CALCULATION; COMMUNITY; CONTROLLED STUDY; GENE CLUSTER; GENE SEQUENCE; HOSPITAL INFECTION; HUMAN; INFLUENZA A (H1N1); INFLUENZA VIRUS A H1N1; INFORMATION PROCESSING; MAJOR CLINICAL STUDY; MICROBIAL DIVERSITY; MOTHER CHILD RELATION; PROBABILITY; VIRUS TRANSMISSION;

CLUSTER ANALYSIS; CROSS INFECTION; GENOTYPE; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; HUMANS; INFLUENZA A VIRUS, H1N1 SUBTYPE; INFLUENZA, HUMAN; MOLECULAR EPIDEMIOLOGY; NEURAMINIDASE; RNA REPLICASE; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VIRAL PROTEINS;

EID: 84867719981     PISSN: 01956701     EISSN: 15322939     Source Type: Journal    
DOI: 10.1016/j.jhin.2012.08.004     Document Type: Article

References (21)

1. Dominguez-Cherit G., Lapinsky S.E., Macias A.E., et al. Critically ill patients with 2009 influenza A(H1N1) in Mexico. JAMA 2009, 302:1880-1887.
2. Kumar A., Zarychanski R., Pinto R., et al. Critically ill patients with 2009 influenza A(H1N1) infection in Canada. JAMA 2009, 302:1872-1881.
3. Blachere F.M., Cao G., Lindsley W.G., Noti J.D., Beezhold D.H. Enhanced detection of infectious airborne influenza virus. J Virol Methods 2009, 176:120-124.
4. Mermel L.A. Preventing the spread of influenza A H1N1 2009 to health-care workers. Lancet Infect Dis 2009, 9:723-724.
5. Tellier R. Review of aerosol transmission of influenza A virus. Emerg Infect Dis 2006, 12:1657-1662.
6. Salgado C.D., Farr B.M., Hall K.K., Hayden F.G. Influenza in the acute hospital setting. Lancet Infect Dis 2002, 2:145-155.
7. Hansen S., Stamm-Balderjahn S., Zuschneid I., et al. Closure of medical departments during nosocomial outbreaks: data from a systematic analysis of the literature. J Hosp Infect 2007, 65:348-353.
8. Jonges M., Liu W.M., van der Vries E., et al. Influenza virus inactivation for studies of antigenicity and phenotypic neuraminidase inhibitor resistance profiling. J Clin Microbiol 2010, 48:928-940.
9. Meijer A., Beerens A., Claas E., et al. Preparing the outbreak assistance laboratory network in the Netherlands for the detection of the influenza virus A(H1N1) variant. J Clin Virol 2009, 45:179-184.
10. Cao B., Li X.W., Mao Y., et al. Clinical features of the initial cases of 2009 pandemic influenza A (H1N1) virus infection in China. N Engl J Med 2009, 361:2507-2517.
11. Meijer A., Jonges M., Abbink F., et al. Oseltamivir-resistant pandemic A(H1N1) 2009 influenza viruses detected through enhanced surveillance in the Netherlands, 2009-2010. Antiviral Res 2011, 92:81-89.
12. Fitch W.M. Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 1971, 20:406-416.
13. Gooskens J., Jonges M., Claas E.C., Meijer A., Kroes A.C. Prolonged influenza virus infection during lymphocytopenia and frequent detection of drug-resistant viruses. J Infect Dis 2009, 199:1435-1441.
14. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739.
15. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980, 16:111-120.
16. Rodriguez-Sanchez B., Alonso M., Catalan P., et al. Genotyping of a nosocomial outbreak of pandemic influenza A/H1N1 2009. J Clin Virol 2011, 52:129-132.
17. Chen L.F., Dailey N.J., Rao A.K., et al. Cluster of oseltamivir-resistant 2009 pandemic influenza A (H1N1) virus infections on a hospital ward among immunocompromised patients - North Carolina, 2009. J Infect Dis 2011, 203:838-846.
18. Qu Y., Zhang R., Cui P., Song G., Duan Z., Lei F. Evolutionary genomics of the pandemic 2009 H1N1 influenza viruses (pH1N 1v). Virol J 2011, 8:250.
19. Carr M.J., Sayre N., Duffy M., Connell J., Hall W.W. Rapid molecular detection of the H275Y oseltamivir resistance gene mutation in circulating influenza A (H1N1) viruses. J Virol Methods 2008, 153:257-262.
20. van der Vries E., Jonges M., Herfst S., et al. Evaluation of a rapid molecular algorithm for detection of pandemic influenza A (H1N1) 2009 virus and screening for a key oseltamivir resistance (H275Y) substitution in neuraminidase. J Clin Virol 2010, 47:34-37.
21. Gooskens J., Jonges M., Claas E.C., Meijer A., van den Broek P.J., Kroes A.M. Morbidity and mortality associated with nosocomial transmission of oseltamivir-resistant influenza A(H1N1) virus. JAMA 2009, 301:1042-1046.