메뉴 건너뛰기




Volumn 5, Issue , 2012, Pages

Comparison of predicted susceptibility between genotype and virtual phenotype HIV drug resistance interpretation systems among treatment-naive HIV-infected patients in Asia: TASER-M cohort analysis

(12)  Jiamsakul, Awachana a   Kantor, Rami b   Li, Patrick C K c   Sirivichayakul, Sunee d   Sirisanthana, Thira e   Kantipong, Pacharee f   Lee, Christopher K C g   Kamarulzaman, Adeeba h   Ratanasuwan, Winai i   Ditangco, Rossana j   Singtoroj, Thida k   Sungkanuparph, Somnuek l  


Author keywords

Algorithm; Asia; HIV; Interpretation; Resistance

Indexed keywords

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 84867681935     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-582     Document Type: Article
Times cited : (7)

References (35)
  • 2
    • 75749148832 scopus 로고    scopus 로고
    • The prevalence of transmitted antiretroviral drug resistance in treatment-naive HIV-infected individuals in China
    • 20104099
    • The prevalence of transmitted antiretroviral drug resistance in treatment-naive HIV-infected individuals in China. Liao L, Xing H, Shang H, Li J, Zhong P, Kang L, Cheng H, Si X, Jiang S, Li X, et al. J Acquir Immune Defic Syndr 2010 53 Suppl 1 10 14 20104099
    • (2010) J Acquir Immune Defic Syndr , vol.53 , Issue.SUPPL. 1 , pp. 1910-1914
    • Liao, L.1    Xing, H.2    Shang, H.3    Li, J.4    Zhong, P.5    Kang, L.6    Cheng, H.7    Si, X.8    Jiang, S.9    Li, X.10
  • 6
    • 79953837870 scopus 로고    scopus 로고
    • HIV-1 drug resistance mutations among antiretroviral-naive HIV-1-infected patients in Asia: Results from the TREAT Asia Studies to Evaluate Resistance-Monitoring Study
    • 10.1093/cid/cir107 21460324
    • HIV-1 drug resistance mutations among antiretroviral-naive HIV-1-infected patients in Asia: results from the TREAT Asia Studies to Evaluate Resistance-Monitoring Study. Sungkanuparph S, Oyomopito R, Sirivichayakul S, Sirisanthana T, Li PC, Kantipong P, Lee CK, Kamarulzaman A, Messerschmidt L, Law MG, et al. Clin Infect Dis 2011 52 8 1053 1057 10.1093/cid/cir107 21460324
    • (2011) Clin Infect Dis , vol.52 , Issue.8 , pp. 1053-1057
    • Sungkanuparph, S.1    Oyomopito, R.2    Sirivichayakul, S.3    Sirisanthana, T.4    Li, P.C.5    Kantipong, P.6    Lee, C.K.7    Kamarulzaman, A.8    Messerschmidt, L.9    Law, M.G.10
  • 7
    • 33745891482 scopus 로고    scopus 로고
    • Efficacy of antiretroviral therapy in individuals infected with HIV-1 non-B subtypes
    • Efficacy of antiretroviral therapy in individuals infected with HIV-1 non-B subtypes. Holguin A, Ramirez de Arellano E, Rivas P, Soriano V, AIDS Rev 2006 8 2 98 107 16848277 (Pubitemid 44043558)
    • (2006) AIDS Reviews , vol.8 , Issue.2 , pp. 98-107
    • Holguin, A.1    De Arellano, E.R.2    Rivas, P.3    Soriano, V.4
  • 8
    • 33750519867 scopus 로고    scopus 로고
    • Impact of HIV-1 pol diversity on drug resistance and its clinical implications
    • DOI 10.1097/QCO.0b013e3280109122, PII 0000143220061200000012
    • Impact of HIV-1 pol diversity on drug resistance and its clinical implications. Kantor R, Curr Opin Infect Dis 2006 19 6 594 606 10.1097/QCO.0b013e3280109122 17075337 (Pubitemid 44665467)
    • (2006) Current Opinion in Infectious Diseases , vol.19 , Issue.6 , pp. 594-606
    • Kantor, R.1
  • 10
    • 33646744181 scopus 로고    scopus 로고
    • Web resources for HIV type 1 genotypic-resistance test interpretation
    • 10.1086/503914 16652319
    • Web resources for HIV type 1 genotypic-resistance test interpretation. Liu TF, Shafer RW, Clin Infect Dis 2006 42 11 1608 1618 10.1086/503914 16652319
    • (2006) Clin Infect Dis , vol.42 , Issue.11 , pp. 1608-1618
    • Liu, T.F.1    Shafer, R.W.2
  • 11
    • 33748879209 scopus 로고    scopus 로고
    • Rationale and uses of a public HIV drug-resistance database
    • 16921473
    • Rationale and uses of a public HIV drug-resistance database. Shafer RW, J Infect Dis 2006 194 Suppl 1 51 58 16921473
    • (2006) J Infect Dis , vol.194 , Issue.SUPPL. 1 , pp. 1951-1958
    • Shafer, R.W.1
  • 12
    • 34547841291 scopus 로고    scopus 로고
    • Prediction of HIV-1 drug susceptibility phenotype from the viral genotype using linear regression modeling
    • DOI 10.1016/j.jviromet.2007.05.009, PII S0166093407001735
    • Prediction of HIV-1 drug susceptibility phenotype from the viral genotype using linear regression modeling. Vermeiren H, Van Craenenbroeck E, Alen P, Bacheler L, Picchio G, Lecocq P, J Virol Methods 2007 145 1 47 55 10.1016/j.jviromet.2007.05.009 17574687 (Pubitemid 47247892)
    • (2007) Journal of Virological Methods , vol.145 , Issue.1 , pp. 47-55
    • Vermeiren, H.1    Van Craenenbroeck, E.2    Alen, P.3    Bacheler, L.4    Picchio, G.5    Lecocq, P.6
  • 13
    • 84856430732 scopus 로고    scopus 로고
    • Development and performance of conventional HIV-1 phenotyping (Antivirogram(R)) and genotype-based calculated phenotyping assay (virco(R)TYPE HIV-1) on protease and reverse transcriptase genes to evaluate drug resistance
    • 10.1159/000332013 22286884
    • Development and performance of conventional HIV-1 phenotyping (Antivirogram(R)) and genotype-based calculated phenotyping assay (virco(R)TYPE HIV-1) on protease and reverse transcriptase genes to evaluate drug resistance. Pattery T, Verlinden Y, De Wolf H, Nauwelaers D, Van Baelen K, Van Houtte M, Mc Kenna P, Villacian J, Intervirology 2012 55 2 138 146 10.1159/000332013 22286884
    • (2012) Intervirology , vol.55 , Issue.2 , pp. 138-146
    • Pattery, T.1    Verlinden, Y.2    De Wolf, H.3    Nauwelaers, D.4    Van Baelen, K.5    Van Houtte, M.6    Mc Kenna, P.7    Villacian, J.8
  • 16
    • 0042154495 scopus 로고    scopus 로고
    • Comparison of nine resistance interpretation systems for HIV-1 genotyping
    • Comparison of nine resistance interpretation systems for HIV-1 genotyping. Sturmer M, Doerr HW, Staszewski S, Preiser W, Antivir Ther 2003 8 3 239 244 12924541 (Pubitemid 36960898)
    • (2003) Antiviral Therapy , vol.8 , Issue.3 , pp. 239-244
    • Sturmer, M.1    Doerr, H.W.2    Staszewsk, S.3    Preiser, W.4
  • 17
    • 0036054193 scopus 로고    scopus 로고
    • Comparison of virtual phenotype and HIV-SEQ program (Stanford) interpretation for predicting drug resistance of HIV strains
    • 10.1046/j.1468-1293.2002.00116.x 12139659
    • Comparison of virtual phenotype and HIV-SEQ program (Stanford) interpretation for predicting drug resistance of HIV strains. Puchhammer-Stockl E, Steininger C, Geringer E, Heinz FX, HIV Med 2002 3 3 200 206 10.1046/j.1468-1293.2002.00116.x 12139659
    • (2002) HIV Med , vol.3 , Issue.3 , pp. 200-206
    • Puchhammer-Stockl, E.1    Steininger, C.2    Geringer, E.3    Heinz, F.X.4
  • 19
    • 42449147844 scopus 로고    scopus 로고
    • Comparison of algorithms that interpret genotypic HIV-1 drug resistance to determine the prevalence of transmitted drug resistance
    • DOI 10.1097/QAD.0b013e3282f5ff71, PII 0000203020080423000005
    • Comparison of algorithms that interpret genotypic HIV-1 drug resistance to determine the prevalence of transmitted drug resistance. Liu L, May S, Richman DD, Hecht FM, Markowitz M, Daar ES, Routy JP, Margolick JB, Collier AC, Woelk CH, et al. AIDS 2008 22 7 835 839 10.1097/QAD.0b013e3282f5ff71 18427201 (Pubitemid 351563832)
    • (2008) AIDS , vol.22 , Issue.7 , pp. 835-839
    • Liu, L.1    May, S.2    Richman, D.D.3    Hecht, F.M.4    Markowitz, M.5    Daar, E.S.6    Routy, J.-P.7    Margolick, J.B.8    Collier, A.C.9    Woelk, C.H.10    Little, S.J.11    Smith, D.M.12
  • 20
    • 33645084526 scopus 로고    scopus 로고
    • Genotypic drug resistance interpretation algorithms display high levels of discordance when applied to non-B strains from HIV-1 naive and treated patients
    • 10.1111/j.1574-695X.2005.00011.x 16420597
    • Genotypic drug resistance interpretation algorithms display high levels of discordance when applied to non-B strains from HIV-1 naive and treated patients. Vergne L, Snoeck J, Aghokeng A, Maes B, Valea D, Delaporte E, Vandamme AM, Peeters M, Van Laethem K, FEMS Immunol Med Microbiol 2006 46 1 53 62 10.1111/j.1574-695X.2005.00011.x 16420597
    • (2006) FEMS Immunol Med Microbiol , vol.46 , Issue.1 , pp. 53-62
    • Vergne, L.1    Snoeck, J.2    Aghokeng, A.3    Maes, B.4    Valea, D.5    Delaporte, E.6    Vandamme, A.M.7    Peeters, M.8    Van Laethem, K.9
  • 21
    • 44649084936 scopus 로고    scopus 로고
    • A study of seven rule-based algorithms for the interpretation of HIV-1 genotypic resistance data in Thailand
    • 10.1016/j.jviromet.2008.03.017 18462814
    • A study of seven rule-based algorithms for the interpretation of HIV-1 genotypic resistance data in Thailand. Poonpiriya V, Sungkanuparph S, Leechanachai P, Pasomsub E, Watitpun C, Chunhakan S, Chantratita W, J Virol Methods 2008 151 1 79 86 10.1016/j.jviromet.2008.03.017 18462814
    • (2008) J Virol Methods , vol.151 , Issue.1 , pp. 79-86
    • Poonpiriya, V.1    Sungkanuparph, S.2    Leechanachai, P.3    Pasomsub, E.4    Watitpun, C.5    Chunhakan, S.6    Chantratita, W.7
  • 23
    • 74449091177 scopus 로고    scopus 로고
    • HIV-1 non-B subtypes: High transmitted NNRTI-resistance in Spain and impaired genotypic resistance interpretation due to variability
    • 10.1016/j.antiviral.2009.11.010 20004217
    • HIV-1 non-B subtypes: High transmitted NNRTI-resistance in Spain and impaired genotypic resistance interpretation due to variability. Yebra G, de Mulder M, del Romero J, Rodriguez C, Holguin A, Antiviral Res 2010 85 2 409 417 10.1016/j.antiviral.2009.11.010 20004217
    • (2010) Antiviral Res , vol.85 , Issue.2 , pp. 409-417
    • Yebra, G.1    De Mulder, M.2    Del Romero, J.3    Rodriguez, C.4    Holguin, A.5
  • 25
    • 67349098439 scopus 로고    scopus 로고
    • TREAT Asia Quality Assessment Scheme (TAQAS) to standardize the outcome of HIV genotypic resistance testing in a group of Asian laboratories
    • 10.1016/j.jviromet.2009.03.016 19490972
    • TREAT Asia Quality Assessment Scheme (TAQAS) to standardize the outcome of HIV genotypic resistance testing in a group of Asian laboratories. Land S, Cunningham P, Zhou J, Frost K, Katzenstein D, Kantor R, Chen YM, Oka S, DeLong A, Sayer D, et al. J Virol Methods 2009 159 2 185 193 10.1016/j.jviromet.2009. 03.016 19490972
    • (2009) J Virol Methods , vol.159 , Issue.2 , pp. 185-193
    • Land, S.1    Cunningham, P.2    Zhou, J.3    Frost, K.4    Katzenstein, D.5    Kantor, R.6    Chen, Y.M.7    Oka, S.8    Delong, A.9    Sayer, D.10
  • 26
    • 70349745177 scopus 로고    scopus 로고
    • Clinical cut-offs for HIV-1 phenotypic resistance estimates: Update based on recent pivotal clinical trial data and a revised approach to viral mixtures
    • 19654022
    • Clinical cut-offs for HIV-1 phenotypic resistance estimates: update based on recent pivotal clinical trial data and a revised approach to viral mixtures. Winters B, Van Craenenbroeck E, Van der Borght K, Lecocq P, Villacian J, Bacheler L, J Virol Methods 2009 162 1-2 101 108 19654022
    • (2009) J Virol Methods , vol.162 , Issue.1-2 , pp. 101-108
    • Winters, B.1    Van Craenenbroeck, E.2    Van Der Borght, K.3    Lecocq, P.4    Villacian, J.5    Bacheler, L.6
  • 29
    • 0027210597 scopus 로고
    • Bias, prevalence and kappa
    • DOI 10.1016/0895-4356(93)90018-V
    • Bias, prevalence and kappa. Byrt T, Bishop J, Carlin JB, J Clin Epidemiol 1993 46 5 423 429 10.1016/0895-4356(93)90018-V 8501467 (Pubitemid 23194263)
    • (1993) Journal of Clinical Epidemiology , vol.46 , Issue.5 , pp. 423-429
    • Byrt, T.1    Bishop, J.2    Carlin, J.B.3
  • 30
    • 0017360990 scopus 로고
    • The measurement of observer agreement for categorical data
    • The measurement of observer agreement for categorical data. Landis JR, Koch GG, Biometrics 1977 33 1 159 174 10.2307/2529310 843571 (Pubitemid 8054849)
    • (1977) Biometrics , vol.33 , Issue.1 , pp. 159-174
    • Landis, J.R.1    Koch, G.G.2
  • 32
    • 34548693401 scopus 로고    scopus 로고
    • Variability of the human immunodeficiency virus type 1 polymerase gene from treatment naïve patients in Accra, Ghana
    • DOI 10.1016/j.jcv.2007.07.016, PII S1386653207002624
    • Variability of the human immunodeficiency virus type 1 polymerase gene from treatment naive patients in Accra, Ghana. Sagoe KW, Dwidar M, Lartey M, Boamah I, Agyei AA, Hayford AA, Mingle JA, Arens MQ, J Clin Virol 2007 40 2 163 167 10.1016/j.jcv.2007.07.016 17827059 (Pubitemid 47419434)
    • (2007) Journal of Clinical Virology , vol.40 , Issue.2 , pp. 163-167
    • Sagoe, K.W.C.1    Dwidar, M.2    Lartey, M.3    Boamah, I.4    Agyei, A.A.5    Hayford, A.A.6    Mingle, J.A.A.7    Arens, M.Q.8
  • 33
    • 77956995883 scopus 로고    scopus 로고
    • Genotypic evaluation of etravirine sensitivity of clinical human immunodeficiency virus type 1 (HIV-1) isolates carrying resistance mutations to nevirapine and efavirenz
    • 20954462
    • Genotypic evaluation of etravirine sensitivity of clinical human immunodeficiency virus type 1 (HIV-1) isolates carrying resistance mutations to nevirapine and efavirenz. Oumar AA, Jnaoui K, Kabamba-Mukadi B, Yombi JC, Vandercam B, Goubau P, Ruelle J, Acta Clin Belg 2010 65 4 242 244 20954462
    • (2010) Acta Clin Belg , vol.65 , Issue.4 , pp. 242-244
    • Oumar, A.A.1    Jnaoui, K.2    Kabamba-Mukadi, B.3    Yombi, J.C.4    Vandercam, B.5    Goubau, P.6    Ruelle, J.7
  • 34
    • 77950159291 scopus 로고    scopus 로고
    • Combination of V106I and V179D polymorphic mutations in human immunodeficiency virus type 1 reverse transcriptase confers resistance to efavirenz and nevirapine but not etravirine
    • 10.1128/AAC.01480-09 20124001
    • Combination of V106I and V179D polymorphic mutations in human immunodeficiency virus type 1 reverse transcriptase confers resistance to efavirenz and nevirapine but not etravirine. Gatanaga H, Ode H, Hachiya A, Hayashida T, Sato H, Oka S, Antimicrob Agents Chemother 2010 54 4 1596 1602 10.1128/AAC.01480-09 20124001
    • (2010) Antimicrob Agents Chemother , vol.54 , Issue.4 , pp. 1596-1602
    • Gatanaga, H.1    Ode, H.2    Hachiya, A.3    Hayashida, T.4    Sato, H.5    Oka, S.6
  • 35
    • 29944445797 scopus 로고    scopus 로고
    • The K101P and K103R/V179D mutations in human immunodeficiency virus type 1 reverse transcriptase confer resistance to nonnucleoside reverse transcriptase inhibitors
    • DOI 10.1128/AAC.50.1.351-354.2006
    • The K101P and K103R/V179D mutations in human immunodeficiency virus type 1 reverse transcriptase confer resistance to nonnucleoside reverse transcriptase inhibitors. Parkin NT, Gupta S, Chappey C, Petropoulos CJ, Antimicrob Agents Chemother 2006 50 1 351 354 10.1128/AAC.50.1.351-354.2006 16377709 (Pubitemid 43042944)
    • (2006) Antimicrobial Agents and Chemotherapy , vol.50 , Issue.1 , pp. 351-354
    • Parkin, N.T.1    Gupta, S.2    Chappey, C.3    Petropoulos, C.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.