Life sciences domain analysis model

Journal of the American Medical Informatics Association

Volumn 19, Issue 6, 2012, Pages 1095-1102

  Freimuth, Robert R ^a   Freund, Elaine T ^b   Schick, Lisa ^c   Sharma, Mukesh K ^d   Stafford, Grace A ^e   Suzek, Baris E ^f   Hernandez, Joyce ^g   Hipp, Jason ^h   Kelley, Jenny M ⁱ   Rokicki, Konrad ^j   Pan, Sue ^j   Buckler, Andrew ^k   Stokes, Todd H ^l   Fernandez, Anna ^m   Fore, Ian ⁱ   Buetow, Kenneth H ⁱ   Klemm, Juli D ⁱ  

^a MAYO CLINIC   (United States)

^b 3rd Millennium Inc   (United States)

^c ScenPro Inc   (United States)

^d WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^e JACKSON LABORATORY   (United States)

^f GEORGETOWN UNIVERSITY   (United States)

^g MERCK RESEARCH LABORATORIES   (United States)

^h UNIVERSITY OF MICHIGAN HEALTH SYSTEM   (United States)

ⁱ NATIONAL CANCER INSTITUTE   (United States)

^j SCIENCE APPLICATIONS INTERNATIONAL CORPORATION   (United States)

^k BBMSC   (United States)

^l EMORY UNIVERSITY SCHOOL OF MEDICINE   (United States)

^m BOOZ ALLEN HAMILTON   (United States)

more..

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BIOMEDICINE; CLINICAL RESEARCH; CONCEPTUAL FRAMEWORK; DATA PROCESSING; LIFE SCIENCES DOMAIN ANALYSIS MODEL; MEDICAL INFORMATION SYSTEM; MODEL; TRANSLATIONAL RESEARCH;

BIOLOGICAL SCIENCE DISCIPLINES; HUMANS; INFORMATION DISSEMINATION; INFORMATION STORAGE AND RETRIEVAL; INFORMATION SYSTEMS; REFERENCE STANDARDS; SEMANTICS; SYSTEMS INTEGRATION; TRANSLATIONAL MEDICAL RESEARCH; UNIFIED MEDICAL LANGUAGE SYSTEM;

EID: 84867664499     PISSN: 10675027     EISSN: 1527974X     Source Type: Journal    
DOI: 10.1136/amiajnl-2011-000763     Document Type: Article

References (38)

1. [7HL] International. Domain Analysis Model. 2008. http://wiki.hl7.org/index.php? title=Domain_Analysis_Model (accessed 21 Sep 2011).
2. Ambler SW. Agile Modeling. UML 2 Class Diagram Guidelines. http://www. agilemodeling.com/style/classDiagram.htm (accessed 22 Sep 2011).
3. National Cancer Institute. Life Sciences Domain Analysis Model (LS DAM). 2011. https://wiki.nci.nih.gov/x/cxRlAQ (accessed 21 Sep 2011).
4. ® life science business architecture model. Bioinformatics 2011;27:1429e35.
5. FuGE | Home Page. Functional Genomics Experiment (FuGE) Home Page. http:// fuge.sourceforge.net (accessed 28 Apr 2011).
6. ISA Infrastructure. http://isatab.sourceforge.net (accessed 21 Sep 2011).
7. BRIDG. Biomedical Research Integrated Domain Group. 2011. http://www. bridgmodel.org/ (accessed 21 Sep 2011).
8. Fridsma DB, Evans J, Hastak S, et al. The BRIDG project: a technical report. J Am Med Inform Assoc 2008;15:130e7.
9. National Cancer Institute. caBIG_ Cancer Biomedical Informatics Grid_. https:// cabig.nci.nih.gov/ (accessed 21 Sep 2011).
10. [7HL] International. Clinical Genomics. 2009. http://www.hl7.org/Special/committees/clingenomics/overview.cfm (accessed 21 Sep 2011).
11. National Cancer Institute. IRWG LS DAM Feedback. 2012. https://wiki.nci.nih.gov/ x/CIHbAQ (accessed 8 Feb 2012).
12. International Organization for Standardization. International Standards for Business, Government and Society. http://www.iso.org/iso/home.html (accessed 21 Sep 2011).
13. Unified Modeling Language (UML_). OMG_, We Set the Standard_. http:// www.omg.org/spec/UML/ (accessed 21 Sep 2011).
14. Sparx Systems. Enterprise Architect. 2011. http://www.sparxsystems.com/ products/ea/index.html (accessed 21 Sep 2011).
15. National Cancer Institute. Enterprise Vocabulary Services. NCI Thesaurus. 2011. http://ncit.nci.nih.gov/ncitbrowser/ (accessed 21 Sep 2011).
16. National Cancer Institute. caTissue Suite. 2011. https://cabig.nci.nih.gov/tools/catissuesuite (accessed 21 Sep 2011).
17. National Cancer Institute. caArray - Array Data Management System. 2011. https://cabig.nci.nih.gov/tools/caArray (accessed 21 Sep 2011).
18. National Cancer Institute. caBIO Wiki Home Page. 2011. https://wiki.nci.nih.gov/x/4Q9y (accessed 21 Sep 2011).
19. National Cancer Institute. Cancer Models Database (caMOD). 2011. https://cabig.nci.nih.gov/tools/caMOD (accessed 21 Sep 2011).
20. National Cancer Institute. caLIMS v2 Wiki Home Page. 2011. https://wiki.nci.nih. gov/x/2oMYAQ (accessed 21 Sep 2011).
21. National Cancer Institute. caNanoLab. 2010. https://cananolab.nci.nih.gov/caNanoLab/ (accessed 21 Sep 2011).
22. National Cancer Institute. Annotation and Image Markup (AIM). 2010. https://cabig.nci.nih.gov/tools/AIM (accessed 21 Sep 2011).
23. National Cancer Institute. National Biomedical Imaging Archive. 2010. https://cabig.nci.nih.gov/tools/NCIA (accessed 21 Sep 2011).
24. ISA Infrastructure. ISA-TAB Format Specification. 2008. http://isatab. sourceforge.net/docs/ISA-TAB_release-candidate-1_v1.0_24nov08.pdf (accessed 22 Sep 2011).
25. National Cancer Institute. caBIG_ Enterprise Use Cases. 2009. http://gforge.nci. nih.gov/docman/index.php?group_id=576&selected_doc_group_id= 4588&language_id1 (accessed 22 Sep 2011).
26. National Cancer Institute. ICRi Scenarios. 2009. https://wiki.nci.nih.gov/download/ attachments/39912351/ICR_Interoperability_Scenarios_20090212.doc (accessed 22 Sep 2011).
27. National Cancer Institute. Experiment Model Implementation Guide Life Sciences Domain Analysis Model v2.2. 2011. https://wiki.nci.nih.gov/download/attachments/ 23401587/Experiment+Model+Implementation+Guide.docx (accessed 28 Apr 2011).
28. National Cancer Institute. LS DAM 2.2.1 Model Download. 2011. https://wiki.nci. nih.gov/download/attachments/23401587/LSDAM_2_2_1.EAP (accessed 22 Sep 2011).
29. National Cancer Institute. LS DAM. 2011. http://ncientarch.info/sandbox/LSDAM2_2_1/ (accessed 22 Sep 2011).
30. Flicek P, Amode MR, Barrell D, et al. Ensembl 2011. Nucleic Acids Res 2011;39: D800e6.
31. Benson DA, Karsch-Mizrachi I, Lipman DJ, et al. GenBank. Nucleic Acids Res 2008;36:D25e30.
32. Kanehisa M, Goto S, Furumichi M, et al. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 2010;38: D355e60.
33. National Cancer Institute. Common Biorepository Model (CBM). 2010. https:// cabig.nci.nih.gov/workspaces/TBPT/CBM/ (accessed 19 Sep 2011).
34. National Cancer Institute. Molecular Annotation Service Case Study. 2011. https://wiki.nci.nih.gov/x/vZv9AQ (accessed 19 Sep 2011).
35. National Cancer Institute. LS DAM 2.2.1 Model Documentation. 2010. https:// wiki.nci.nih.gov/download/attachments/23401587/LSDAM2_2_1 +ModelDocumentation.rtf (accessed 22 Sep 2011).
36. National Cancer Institute. NCI Term Form. 2011. https://wiki.nci.nih.gov/x/ZwVyAQ (accessed 8 Feb 2012).
37. National Cancer Institute. Suggested LS DAM Future Activities: Compilation of Items and Background. https://wiki.nci.nih.gov/download/attachments/23401587/LS+DAM+2_2Future+Activities+Compilation.docx?version=1&modificationDate=1304986410000 (accessed 22 Sep 2011).
38. National Cancer Institute. IRWG LS DAM Feedback. 2011. https://wiki.nci.nih.gov/x/CIHbAQ (accessed 18 Sep 2011).