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Volumn , Issue , 2012, Pages 729-732

Structural intervention of gene regulatory networks by general rank-k matrix perturbation

Author keywords

Boolean network; Genetic regulatory network; probabilistic Boolean network; rank k matrix perturbation; Sherman Morrison Woodbury; structural intervention

Indexed keywords

BOOLEAN NETWORKS; GENETIC REGULATORY NETWORKS; MATRIX PERTURBATION; PROBABILISTIC BOOLEAN NETWORKS; SHERMAN-MORRISON-WOODBURY; STRUCTURAL INTERVENTION;

EID: 84867605209     PISSN: 15206149     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICASSP.2012.6287987     Document Type: Conference Paper
Times cited : (7)

References (18)
  • 1
    • 0014489272 scopus 로고
    • Metabolic stability and epigenesis in randomly constructed genetic nets
    • SA Kauffman, "Metabolic stability and epigenesis in randomly constructed genetic nets," Journal of Theoretical Biology, vol. 22, pp. 437-467, 1969.
    • (1969) Journal of Theoretical Biology , vol.22 , pp. 437-467
    • Kauffman, S.A.1
  • 3
    • 0036184629 scopus 로고    scopus 로고
    • Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks
    • I Shmulevich, ER Dougherty, S Kim, and W Zhang, "Probabilistic Boolean networks: A rule-based uncertainty model for gene regulatory networks," Bioinformatics, vol. 18, no. 2, pp. 261-274, 2002.
    • (2002) Bioinformatics , vol.18 , Issue.2 , pp. 261-274
    • Shmulevich, I.1    Dougherty, E.R.2    Kim, S.3    Zhang, W.4
  • 4
    • 0032809387 scopus 로고    scopus 로고
    • Gene expression profiling, genetic networks, and cellular states: An integrating concept for tumorigenesis and drug discovery
    • S Huang, "Gene expression profiling, genetic networks, and cellular states: An integrating concept for tumorigenesis and drug discovery," J Mol Med, vol. 77, pp. 469-480, 1999.
    • (1999) J Mol Med , vol.77 , pp. 469-480
    • Huang, S.1
  • 5
    • 33747874092 scopus 로고    scopus 로고
    • Dynamical analysis of a generic boolean model for the control of the mammalian cell cycle
    • A Faure, A Naldi, C Chaouiya, and D Theiffry, "Dynamical analysis of a generic boolean model for the control of the mammalian cell cycle," Bioinformatics, vol. 22, no. 14, pp. 124-131, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. 124-131
    • Faure, A.1    Naldi, A.2    Chaouiya, C.3    Theiffry, D.4
  • 7
    • 0001296683 scopus 로고
    • Perturbation theory and finite Markov chains
    • PJ Schweitzer, "Perturbation theory and finite Markov chains," J Appl Probab, vol. 5, pp. 401-413, 1968.
    • (1968) J Appl Probab , vol.5 , pp. 401-413
    • Schweitzer, P.J.1
  • 8
    • 85032751035 scopus 로고    scopus 로고
    • Control approaches for probabilistic gene regulatory networks
    • A Datta, R Pal, A Choudhary, and ER Dougherty, "Control approaches for probabilistic gene regulatory networks," IEEE Signal Processing Mag, vol. 24, no. 1, pp. 54-63, 2007.
    • (2007) IEEE Signal Processing Mag , vol.24 , Issue.1 , pp. 54-63
    • Datta, A.1    Pal, R.2    Choudhary, A.3    Dougherty, E.R.4
  • 9
    • 16344368806 scopus 로고    scopus 로고
    • Intervention in context-sensitive probabilistic Boolean networks
    • R Pal, A Datta, ML Bittner, and ER Dougherty, "Intervention in context-sensitive probabilistic Boolean networks," Bioinformatics, vol. 21, pp. 1211-1218, 2005.
    • (2005) Bioinformatics , vol.21 , pp. 1211-1218
    • Pal, R.1    Datta, A.2    Bittner, M.L.3    Dougherty, E.R.4
  • 10
    • 38949144494 scopus 로고    scopus 로고
    • On approximate stochastic control in genetic regulatory networks
    • B Faryabi, A Datta, and ER Dougherty, "On approximate stochastic control in genetic regulatory networks," IET Systems Biology, vol. 1, no. 6, pp. 361-368, 2007.
    • (2007) IET Systems Biology , vol.1 , Issue.6 , pp. 361-368
    • Faryabi, B.1    Datta, A.2    Dougherty, E.R.3
  • 11
    • 0347164904 scopus 로고    scopus 로고
    • Control of stationary behavior in probabilistic Boolean networks by means of structural intervention
    • I Shmulevich et al., "Control of stationary behavior in probabilistic Boolean networks by means of structural intervention," Biol Sys, vol. 10, pp. 431-446, 2002.
    • (2002) Biol Sys , vol.10 , pp. 431-446
    • Shmulevich, I.1
  • 12
    • 34447342269 scopus 로고    scopus 로고
    • The impact of function perturbations in Boolean networks
    • Y Xiao and ER Dougherty, "The impact of function perturbations in Boolean networks," Bioinformatics, vol. 23, pp. 1265-1273, 2007.
    • (2007) Bioinformatics , vol.23 , pp. 1265-1273
    • Xiao, Y.1    Dougherty, E.R.2
  • 13
    • 53149114883 scopus 로고    scopus 로고
    • Effect of function perturbation on the steady state distribution of genetic regulatory networks: Optimal structural intervention
    • X Qian and ER Dougherty, "Effect of function perturbation on the steady state distribution of genetic regulatory networks: Optimal structural intervention," IEEE Transactions on Signal Processing, vol. 56, no. 10, pp. 4966-4976, 2008.
    • (2008) IEEE Transactions on Signal Processing , vol.56 , Issue.10 , pp. 4966-4976
    • Qian, X.1    Dougherty, E.R.2
  • 14
    • 0000905617 scopus 로고
    • Adjustment of an inverse matrix corresponding to a change in one element of a given matrix
    • J Sherman and WJ Morrison, "Adjustment of an inverse matrix corresponding to a change in one element of a given matrix," Annals of Mathematical Statistics, vol. 21, no. 1, pp. 124-127, 1950.
    • (1950) Annals of Mathematical Statistics , vol.21 , Issue.1 , pp. 124-127
    • Sherman, J.1    Morrison, W.J.2
  • 15
    • 34347353056 scopus 로고    scopus 로고
    • Function constrains network architecture and dynamics: A case study on the yeast cell cycle Boolean network
    • K Lau, S Ganguli, and C Tang, "Function constrains network architecture and dynamics: A case study on the yeast cell cycle Boolean network," Phys Rev E, vol. 75, pp. 051907, 2007.
    • (2007) Phys Rev E , vol.75 , pp. 051907
    • Lau, K.1    Ganguli, S.2    Tang, C.3
  • 16
    • 50549088838 scopus 로고    scopus 로고
    • Synchronous versus asynchronous modeling of gene regulatory networks
    • A Garg, A Di Cara, I Xenarios, L Mendoza, and G De Micheli, "Synchronous versus asynchronous modeling of gene regulatory networks," Bioinformatics, vol. 24, pp. 1917-1925, 2008.
    • (2008) Bioinformatics , vol.24 , pp. 1917-1925
    • Garg, A.1    Di Cara, A.2    Xenarios, I.3    Mendoza, L.4    De Micheli, G.5
  • 17
    • 43149108161 scopus 로고    scopus 로고
    • A bistable Myc-Rb-E2F switch: A model for the restriction point
    • G Yao, TJ Lee, S Mori, JR Nevins, and L You, "A bistable Myc-Rb-E2F switch: A model for the restriction point," Nat Cell Biol, vol. 10, pp. 476-482, 2008.
    • (2008) Nat Cell Biol , vol.10 , pp. 476-482
    • Yao, G.1    Lee, T.J.2    Mori, S.3    Nevins, J.R.4    You, L.5
  • 18
    • 69149096214 scopus 로고    scopus 로고
    • Intervention in gene regulatory networks via greedy control policies based on long-run behavior
    • X Qian, I Ivanov, N Ghaffari, and ER Dougherty, "Intervention in gene regulatory networks via greedy control policies based on long-run behavior," BMC Systems Biology, vol. 3, pp. 61, 2009.
    • (2009) BMC Systems Biology , vol.3 , pp. 61
    • Qian, X.1    Ivanov, I.2    Ghaffari, N.3    Dougherty, E.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.