Detection of avian group D rotavirus using the polymerase chain reaction for the VP6 gene

Journal of Virological Methods

Volumn 185, Issue 2, 2012, Pages 189-192

  Bezerra, Delana Andreza Melo ^a   da Silva, René Ribeiro ^b   Kaiano, Jane Haruko Lima ^a   Silvestre, Rodrigo Vellasco Duarte ^a   de Souza Oliveira, Darleise ^a   Linhares, Alexandre C ^a   Gabbay, Yvone Benchimol ^a   Mascarenhas, Joana D'Arc Pereira ^a  

^a INSTITUTO EVANDRO CHAGAS   (Brazil)

^b PECUÁRIA E ABASTECIMENTO   (Brazil)

Author keywords

Avian; Group D rotaviruses; RT PCR; VP6 gene

Indexed keywords

PROTEIN VP6;

ARTICLE; DILUTION; GENE AMPLIFICATION; GROUP A ROTAVIRUS; GROUP D ROTAVIRUS; INTERMETHOD COMPARISON; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PICOBIRNAVIRUS; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; REOVIRUS; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; ROTAVIRUS; SENSITIVITY AND SPECIFICITY; SEQUENCE ANALYSIS; VIRUS DETECTION; VIRUS GENE; VP6 GENE;

ANIMALS; ANTIGENS, VIRAL; BASE SEQUENCE; CAPSID PROTEINS; CHICKENS; CLONING, MOLECULAR; DNA PRIMERS; ELECTROPHORESIS, POLYACRYLAMIDE GEL; ESCHERICHIA COLI; FECES; GENES, VIRAL; PHYLOGENY; REPRODUCIBILITY OF RESULTS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; SENSITIVITY AND SPECIFICITY;

EID: 84867589390     PISSN: 01660934     EISSN: 18790984     Source Type: Journal    
DOI: 10.1016/j.jviromet.2012.07.017     Document Type: Article

References (24)

1. Ayres M., Ayres J.R.M., Ayres D.L., Santos A.S. BioEstat 5.0: Aplicações estatísticas nas áreas das ciências biológicas e médicas. 5ed. Belém. Instituto de Desenvolvimento Sustentável Mamirauá - IDSM/MCT/CNPq, p 2007, 364.
2. Boom R., Sol C.J., Salimans M.M., Jansen C.L., Wertheim-Van Dillen P.M., Van Der Noordaa J. Rapid and simple method for purification of nucleic acids. Journal of Clinical Microbiology 1990, 28:495-503.
3. Devitt C.M., Reynolds D.L. Characterization of a group D rotavirus. Avian Diseases 1993, 37:749-755.
4. Elschner M., Hotzel H., Reetz J., Diller R., Otto P. Isolation, identification and characterization of group A from a chicken: the inner capsid protein sequence shows only a distant phylogenetic relationship to most other avian group A rotaviruses. Journal of Veterinary Medicine 2005, 52:211-213.
5. Estes M.K., Kapikian A.Z. Rotaviruses. Fields Virology 2007, 1917-1974. Lippincott, Williams and Wilkins, Philadelphia. 5th ed. D.M. Kniepe, P.M. Howley, D.E. Griffin, M.A. Martin, B. Roizman, S.E. Straus (Eds.).
6. Islam M.S., Alam M.M., Ahmed M.U., Saifuzzaman A.B.M., Kobayashi N., Kayesh M.E.H., Udin M.S. Molecular epidemiologic study on rotavirus infection in human and birds in association with gastroenteritis. Bangladesh Journal of Veterinary Medicine 2009, 7:233-237.
7. Jindal N., Patnayak D.P., Chander Y., Ziegler A.F., Goyal S.M. Detection and molecular characterization of enteric viruses in breeder turkeys. Avian Pathology 2010, 39:53-61.
8. Johne R., Otto P., Roth B., Löhren U., Belnap D., Reetz J., Trojnar E. Sequence analysis of the VP6-encoding genome segment of avian group F and G rotaviruses. Virology 2011, 442:384-439.
9. Kimura M. A simple method for estimating evolutionary rate of base substitution through comparative studies of nucleotide sequences. Journal of Molecular Evolution 1980, 16:111-120.
10. Lojkić I., Bidin M., Bidin Z., Mikec M. Viral agents associated with poult enteritis in croatian commercial turkey flocks. Acta Veterinaria 2009, 79:91-98.
11. Otto P., Liebler-Tenorio E.M., Elschner M., Reetz J., Lohren U., Dille R. Detection of rotaviruses and intestinal lesions in broiler chicks from flocks with runting and stunting syndrome (RSS). Avian Diseases 2006, 50:411-418.
12. Otto P.H., Ahmed M.U., Hotzel H., Machnowska P., Reetz J., Roth B., Trojnar E., Johne R. Detection of avian rotaviruses of groups A, D, F and G in diseased chickens and turkeys from Europe and Bangladesh. Veterinary Microbiology 2011, 156:8-15.
13. Pantin-Jackwood M.J., Day J.M., Jackwood M.W., Spackman E. Enteric viruses detected by molecular methods in commercial chicken and turkey flocks in the United States between 2005 and 2006. Avian Diseases 2008, 52:235-244.
14. Pereira H.G., Azeredo R.S., Leite J.P., Barth O.M., Sutmoller F., De Farias V., Vidal M.N. Comparison of polyacrilamide gel electrophoresis (PAGE), immuno-electron microscopy (IEM) and enzyme immunoassay (EIA) for the rapid diagnosis of rotavirus infection in children. Memórias do Instituto Oswaldo Cruz 1983, 78:483-490.
15. Ramig R.F., Ciarlet M., Mertens P.P.C., Dermody T.S. Genus rotavirus. Virus Taxonomy. Eighth report of the ICTV 2005, 484-496. Elsevier Academic Press, Amsterdam, Netherlands. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
16. Reynolds D.L., Saif Y.M., Theil K.W. A survey of enteric viruses of turkey poults. Avian Diseases 1987, 31:89-98.
17. Savita.Kusumakar A.L., Malik Y.P.S., Minakshi Prasad G. Detection and characterization of group A and D avian rotaviruses in India. Indian Journal of Biotechnology 2008, 7:554-556.
18. Schuman T., Hotzel H., Otto P., Johne R. Evidence of interspecies transmission and reassortment among avian group A rotaviruses. Virology 2009, 386:334-343.
19. Tamehiro C.Y., Alfieri A.F., Medici C., Afieri A.A. Segmented double-stranded genomic RNA viruses in fecal samples from broiler chicken. Brazilian Journal of Microbiology 2003, 34:344-348.
20. Trojnar E., Otto P., Johne R. The first complete genome sequence of a chicken group A rotavirus indicates independent evolution of mammalian and avian strains. Virology 2009, 386:325-333.
21. Trojnar E., Otto P., Roth B., Reetz J., Johne E. The genome segments of a group D rotavirus possess group A-like conserved termini but encode group-specific proteins. Journal of Virology 2010, 84:10254-10265.
22. Ursu K., Papp H., Kisfali P., Rigó D., Melegh B., Martella V., Bányai K. Monitoring of group A rotaviruses in wild-living birds in Hungary. Avian Diseases 2011, 55:123-127.
23. Villarreal L.Y.B., Uliana G., Valenzuela C., Chácon J.L.V., Saindenberg A.B.S., Sanches A.A., Brandão P.E., Jerez J.A., Ferreira A.J.P. Rotavirus detection and isolation from chickens with or without symptoms. Brazilian Journal of Poultry Science 2006, 3:187-191.
24. Yegani M., Korve D.R. Factors affecting intestinal health in poultry. Poultry Science 2008, 87:2052-2063.