Plant growth enhancing effects by a siderophore-producing endophytic streptomycete isolated from a Thai jasmine rice plant (Oryza sativa L. cv. KDML105)

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 102, Issue 3, 2012, Pages 463-472

  Rungin, Siriwan ^a   Indananda, Chantra ^a,b   Suttiviriya, Pavinee ^a   Kruasuwan, Worarat ^a   Jaemsaeng, Ratchaniwan ^a   Thamchaipenet, Arinthip ^a  

^a KASETSART UNIVERSITY   (Thailand)

^b BURAPHA UNIVERSITY   (Thailand)

Author keywords

Endophyte; Mungbean (Vigna radiata (L.) Wilczek); Plant growth promotion; Rice (Oryza sativa L.); Siderophore; Streptomyces

Indexed keywords

FERRIC CITRATE; PHOSPHATE; SIDEROPHORE;

ARTICLE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATION; BACTERIUM MUTANT; BIOMASS; BIOSYNTHESIS; CONTROLLED STUDY; MUNG BEAN; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GROWTH; PLANT ROOT; PRIORITY JOURNAL; RICE; SHOOT; STREPTOMYCES; STREPTOMYCES GMKU 3100; WILD TYPE;

BIOMASS; CULTURE MEDIA; DNA, BACTERIAL; ENDOPHYTES; FABACEAE; FERRIC COMPOUNDS; IRON; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHOSPHATES; PLANT GROWTH REGULATORS; PLANT ROOTS; PLANT SHOOTS; SEQUENCE ANALYSIS, DNA; SIDEROPHORES; STREPTOMYCES;

ACTINOBACTERIA (CLASS); JASMINUM; ORYZA SATIVA; PHORA; STREPTOMYCES; STREPTOMYCES SP.; VIGNA RADIATA;

EID: 84867581433     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-012-9778-z     Document Type: Article

References (50)

1. Barona-Gómez F, Wong U, Giannakopulos AE, Derrick PJ, Challis GL (2004) Identification of a cluster of genes that directs desferrioxamine biosynthesis in Streptomyces coe-licolor M145. J Am Chem Soc 126:16282-16283
2. Barona-Gómez F, Lautru S, Francou F-X, Leblond P, Pernodet J-L, Challis GL (2006) Multiple biosynthetic and uptake systems mediate siderophore-dependent iron acquisition in Streptomyces coelicolor A3 (2) and Streptomyces ambo-faciens ATCC 23877. Microbiology 152:3355-3366
3. Bascom-Slack CA, Ma C, Moore E, Babbs B, Fenn K, Greene JS, Hann BD, Keehner J, Kelley-Swift EG, Kembaiyan V, Lee S-J, Li P, Light DY, Lin EH, Schorn MA, Vekhter D, Boulanger L-A, Hess WM, Vargas PN, Strobel GA, Strobel SA (2009) Multiple, novel biologically active endophytic actinomycetes isolated from upper amazonian rainforests. Microb Ecol 58:374-383
4. Cao L, Qiu Z, You J, Tan H, Zhou S (2005) Isolation and characterization of endophytic streptomycete antagonists of Fusarium wilt pathogen from surface-sterilized banana roots. FEMS Microbiol Lett 247:147-152
5. Choi SU, Lee CK, Hwang YI, Kinoshita H, Nihira T (2004) Cloning and functional analysis by gene disruption of a gene encoding a c-butyrolactone autoregulator receptor from Kitasatospora setae. J Bacteriol 186:3423-3430
6. Coombs JT, Michelsen PP, Franco CMM (2004) Evaluation of endophytic actinobacteria as antagonists of Gaeumannomy-ces graminis var. tritici in wheat. Biol Control 29:359-366
7. Crowley DE, Wang YC, Reid CPP, Szaniszlo PJ (1991) Mechanisms of iron acquisition from siderophores by microorganisms and plants. Plant Soil 130:179-198
8. Dimkpa C, Svatoš A, Merten D, Büchel G, Kothe E (2008) Hydroxamate siderophores produced by Streptomyces acidiscabies E13 bind nickel and promote growth in cowpea (Vigna unguiculata L.) under nickel stress. Can J Microbiol 54:163-172
9. El-Tarabily KA, Nassar AH, Hardy GESJ, Sivasithamparam K (2009) Plant growth promotion and biological control of Pythium aphanidermatum, a pathogen of cucumber, by endophytic actinomycetes. J Appl Microbiol 106:13-26
10. Fialho de Oliveira M, Germano da Silva M, Van der Sand ST (2010) Anti-phytopathogen potential of endophytic actinobacteria isolated from tomato plants (Lycopersicon esculentum) in southern Brazil, and characterization of Streptomyces sp. R18(6), a potential biocontrol agent. Res Microbiol 161:565-572
11. Germida JJ, Siciliano SD, Freitas R, Seib AM (1998) Diversity of root-associated bacteria associated with field-grown canola (Brassica napus L.) and wheat (Triticum aestivum L.). FEMS Microbiol Ecol 26:43-50
12. Glick BR, Patten CL, Holguin G, Penrose DM (1999) Biochemical and genetic mechanisms used by plant growth promoting bacteria. World Scientific, River Edge
13. Glickmann E, Dessaux Y (1995) A critical examination of the specificity of the salkowski reagent for indolic compounds produced by phytopathogenic bacteria. Appl Environ Microbiol 61:793-796
14. Gordon SA, Weber RP (1951) Colorimetric estimation of indole acetic acid. Plant Physiol 26:192-195
15. Hasegawa S, Meguro A, Shimizu M, Nishimura T, Kunoh H (2006) Endophytic actinomycetes and their interactions with host plants. Actinomycetologica 20:72-81
16. Hoagland DR, Arnon DI (1950) The water-culture method of growing plants without soil. California Agricultural Experiment Station, Circular 347
17. Hobbs G, Frazer CM, Gardner DCJ, Cullum JA, Oliver SG (1989) Dispersed growth of Streptomyces in liquid culture. Appl Microbiol Biotechnol 31:272-277
18. Imbert M, Beøchet M, Blondeau R (1995) Comparison of the main siderophores produced by some species of Strepto-myces. Curr Microbiol 31:129-133
19. Inbar E, Green SJ, Hadar Y, Minz D (2005) Competing factors of compost concentration and proximity to root affect the distribution of streptomycetes. Microb Ecol 50:73-81
20. Indananda C, Matsumoto A, Inahashi Y, Takahashi Y, Duang-mal K, Thamchaipenet A (2010) Actinophytocola oryzae gen. nov., sp. nov., isolated from root of Thai glutinous rice plants, a new member of the family Pseudonocardiaceae. Int J Syst Evol Microbiol 60:1141-1146
21. Indananda C, Thamchaipenet A, Matsumoto A, Inahashi Y, Du-angmal K, Takahashi Y (2011) Actinoallomurus oryzae sp. nov., an endophytic actinomycete isolated from root of Thai jasmine rice plant. Int J Syst Evol Microbiol 61:737-741
22. Kim OS, Cho YJ, Lee K, Yoon SH, Kim M, Na H, Park SC, Jeon YS, Lee JH, Yi H, Won S, Chun J (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716-721
23. Kunoh H (2002) Endophytic actinomycetes: attractive biocon-trol agents. J Gen Plant Pathol 68:249-252
24. Küster E, Williams ST (1964) Selection of media for isolation of streptomycetes. Nature 202:928-929
25. MacNeil DJ, Gewain KM, Ruby CL, Dezeny G, Gibbons PH, MacNeil T (1992) Analysis of Streptomyces avermitilis genes required for avermectin biosynthesis utilizing a novel integration vector. Gene 111:61-68
26. Mano H, Morisaki H (2008) Endophytic bacteria in the rice plant. Microbes Environ 23:109-117
27. Mercado-Blanco J, Bakker PAHM (2007) Interactions between plants and beneficial Pseudomonas spp.: exploiting bacterial traits for crop protection. Antonie Van Leeuwenhoek 92:367-389
28. Misk A, Franco C (2011) Biocontrol of chickpea root rot using endophytic actinobacteria. Biol Control 56:811-822
29. Musson G, McInroy JA, Kloepper JW (1995) Development of delivery systems for introducing endophytic bacteria into cotton. Biocontrol Sci Technol 5:407-416
30. Naik BS, Shashikala J, Krishnamurthy YL (2009) Study on the diversity of endophytic communities from rice (Oryza sa-tiva L.) and their antagonistic activities in vitro. Microbiol Res 164:290-296
31. Neilands JB (1995) Siderophores: structure and function of microbial iron transport compounds. J Biol Chem 270:26723-26726
32. Nimnoi P, Pongsilp N, Lumyong S (2010) Endophytic actino-mycetes isolated from Aquilaria crassna Pierre ex Lec and screening of plant growth promoters production. World J Microbiol Biotechnol 26:193-203
33. Phornphisutthimas S, Sudtachat N, Bunyoo C, Chotewutmontri P, Panijpan B, Thamchaipenet A (2010) Development of an intergeneric conjugal transfer system for rimocidin-producing Streptomyces rimosus. Lett Appl Microbiol 50:530-536
34. Pikovskaya RI (1948) Mobilization of phosphorus in soil in connection with the vital activity of some microbial species. Mikrobiologiya 17:362-370
35. Qin S, Li J, Chen H-H, Zhao G-Z, Zhu W-Y, Jiang C-L, Xu L-H, Li W-J (2009) Isolation, diversity, and antimicrobial activity of rare actinobacteria from medicinal plants of tropical rain forests in Xishuangbanna, China. Appl Environ Microbiol 75:6176-6186
36. Qin S, Xing K, Jiang J-H, Xu L-H, Li W-J (2011) Biodiversity, bioactive natural products and biotechnological potential of plant-associated endophytic actinobacteria. Appl Microbiol Biotechnol 89:457-473
37. Quecine MC, Araujo WL, Marcon J, Gai CS, Azevedo JL, Pizzirani-Kleiner AA (2008) Chitinolytic activity of endophytic Streptomyces and potential for biocontrol. Lett Appl Microbiol 47:486-491
38. Ruanpanun P, Tangchitsomkid N, Hyde KD, Lumyong S (2010) Actinomycetes and fungi isolated from plant-parasitic nematode infested soils: screening of the effective bio-control potential, indole-3-acetic acid and siderophore production. World J Microbiol Biotechnol 26:1569-1578
39. Sadeghi A, Karimi E, Dahaji PA, Javid MG, Dalvand Y, Askari H (2012) Plant growth promoting activity of an auxin and siderophore producing isolate of Streptomyces under saline soil conditions. World J Microbiol Biotechnol 28:1503-1509
40. Sardi P, Saracchi M, Quaroni S, Petrolini B, Borgonovi GE, Merli S (1992) Isolation of endophytic Streptomyces strains from surface-sterilized roots. Appl Environ Micro-biol 58:2691-2693
41. Schwyn B, Neilands JB (1987) Universal chemical assay for the detection and determination of siderophores. Anal Bio-chem 160:47-56
42. Sharma A, Johri BN, Sharma AK, Glick BR (2003) Plant growth-promoting bacterium Pseudomonas sp. strain GRP3 influences iron acquisition in mung bean (Vigna radiata L. Wilzeck). Soil Biol Biochem 35:887-894
43. Sun J, Kelemen GH, Fernaøndez-Abalos JM, Bibb MJ (1999) Green fluorescent protein as a reporter for spatial and temporal gene expression in Streptomyces coelicolor A3 (2). Microbiology 145:2221-2227
44. Taechowisan T, Peberdy JF, Lumyong S (2003) Isolation of endophytic actinomyces from selected plants and their antifungal activity. World J Microbiol Biotechnol 19:381-385
45. Tan HM, Cao LX, He ZF, Su GJ, Lin B, Zhou SN (2006) Isolation of endophytic actinobacteria from different cultivars of tomato and their activities against Ralstonia solanace-raum in vitro. World J Microbiol Biotechnol 22:1275-1280
46. Tian XL, Cao LX, Tan HM, Zeng QG, Jia YY, Zhou SN (2004) Study on the communities of endophytic fungi and endo-phytic actinomycetes from rice and their antipathogenic activities in vitro. World J Microbiol Biotechnol 20:303-309
47. Tian X, Cao L, Tan H, Han W, Chen M, Liu Y, Zhou S (2007) Diversity of cultivated and uncultivated actinobacterial endophytes in the stems and roots of rice. Microbial Ecol 53:700-707
48. Trujillo ME, Alonso-Vega P, Rodríguez R, Carro L, Cerda E, Alonso P, Martínez-Molina E (2010) The genus Micro-monospora is widespread in legume root nodules: the example of Lupinus angustifolius. ISME J 4:1265-1281
49. Verma VC, Singh SK, Prakash S (2011) Bio-control and plant growth promotion potential of siderophore producing endophytic Streptomyces from Azadirachta indica A. Juss. J Basic Microbiol 51:550-556
50. Zin NM, Sarmin NIM, Ghadin N, Basri DF, Sidik NM, Hess WM, Strobel GA (2007) Bioactive endophytic streptomy-cetes from the Malay Peninsula. FEMS Microbiol Lett 274:83-88