메뉴 건너뛰기




Volumn 40, Issue 18, 2012, Pages

Fidelity of capture-enrichment for mtDNA genome sequencing: Influence of NUMTs

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

EID: 84867487186     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks499     Document Type: Article
Times cited : (96)

References (23)
  • 1
    • 53649106195 scopus 로고    scopus 로고
    • Next-generation DNA sequencing
    • Shendure,J. and Ji,H. (2008) Next-generation DNA sequencing. Nat. Biotechnol., 26, 1135-1145.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1135-1145
    • Shendure, J.1    Ji, H.2
  • 4
    • 84855564475 scopus 로고    scopus 로고
    • Next-generation sequencing for cancer diagnostics: A practical perspective
    • Meldrum,C., Doyle,M.A. and Tothill,R.W. (2011) Next-generation sequencing for cancer diagnostics: A practical perspective. Clin. Biochem. Rev., 32, 177-195.
    • (2011) Clin. Biochem. Rev. , vol.32 , pp. 177-195
    • Meldrum, C.1    Doyle, M.A.2    Tothill, R.W.3
  • 5
    • 80053540892 scopus 로고    scopus 로고
    • Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens
    • Mason,V.C., Li,G., Helgen,K.M. and Murphy,W.J. (2011) Efficient cross-species capture hybridization and next-generation sequencing of mitochondrial genomes from noninvasively sampled museum specimens. Genome Res., 21, 1695-1704.
    • (2011) Genome Res. , vol.21 , pp. 1695-1704
    • Mason, V.C.1    Li, G.2    Helgen, K.M.3    Murphy, W.J.4
  • 6
    • 77649210966 scopus 로고    scopus 로고
    • Molecular poltergeists: Mitochondrial DNA copies (numts) in sequenced nuclear genomes
    • Hazkani-Covo,E., Zeller,R.M. and Martin,W. (2010) Molecular poltergeists: Mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genet., 6,-e1000834.
    • (2010) PLoS Genet. , vol.6
    • Hazkani-Covo, E.1    Zeller, R.M.2    Martin, W.3
  • 7
    • 0036073133 scopus 로고    scopus 로고
    • Pattern of organization of human mitochondrial pseudogenes in the nuclear genome
    • Woischnik,M. and Moraes,C.T. (2002) Pattern of organization of human mitochondrial pseudogenes in the nuclear genome. Genome Res., 12, 885-893.
    • (2002) Genome Res. , vol.12 , pp. 885-893
    • Woischnik, M.1    Moraes, C.T.2
  • 8
    • 80054692304 scopus 로고    scopus 로고
    • The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser
    • Simone,D., Calabrese,F.M., Lang,M., Gasparre,G. and Attimonelli,M. (2011) The reference human nuclear mitochondrial sequences compilation validated and implemented on the UCSC genome browser. BMC Genomics, 12, 517.
    • (2011) BMC Genomics , vol.12 , pp. 517
    • Simone, D.1    Calabrese, F.M.2    Lang, M.3    Gasparre, G.4    Attimonelli, M.5
  • 9
    • 78649512174 scopus 로고    scopus 로고
    • Multiplexed DNA sequence capture of mitochondrial genomes using PCR products
    • Maricic,T., Whitten,M. and Paabo,S. (2010) Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS One, 5,-e14004.
    • (2010) PLoS One , vol.5
    • Maricic, T.1    Whitten, M.2    Paabo, S.3
  • 10
    • 84863378936 scopus 로고    scopus 로고
    • Contrasting maternal and paternal histories in the linguistic context of Burkina Faso
    • Barbieri,C., Whitten,M., Beyer,K., Schreiber,H., Li,M. and Pakendorf,B. (2012) Contrasting maternal and paternal histories in the linguistic context of Burkina Faso. Mol. Biol. Evol., 29, 1213-1223.
    • (2012) Mol. Biol. Evol. , vol.29 , pp. 1213-1223
    • Barbieri, C.1    Whitten, M.2    Beyer, K.3    Schreiber, H.4    Li, M.5    Pakendorf, B.6
  • 15
    • 80052025732 scopus 로고    scopus 로고
    • High-Throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: High diversity and demographic inferences
    • Schonberg,A., Theunert,C., Li,M., Stoneking,M. and Nasidze,I. (2011) High-Throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: High diversity and demographic inferences. Eur. J. Hum. Genet., 19, 988-994.
    • (2011) Eur. J Hum. Genet. , vol.19 , pp. 988-994
    • Schonberg, A.1    Theunert, C.2    Li, M.3    Stoneking, M.4    Nasidze, I.5
  • 16
    • 77955562856 scopus 로고    scopus 로고
    • Detecting heteroplasmy from high-Throughput sequencing of complete human mitochondrial DNA genomes
    • Li,M., Schonberg,A., Schaefer,M., Schroeder,R., Nasidze,I. and Stoneking,M. (2010) Detecting heteroplasmy from high-Throughput sequencing of complete human mitochondrial DNA genomes. Am. J. Hum. Genet., 87, 237-249.
    • (2010) Am. J Hum. Genet. , vol.87 , pp. 237-249
    • Li, M.1    Schonberg, A.2    Schaefer, M.3    Schroeder, R.4    Nasidze, I.5    Stoneking, M.6
  • 17
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • The 1000 Genomes Project Consortium
    • The 1000 Genomes Project Consortium. (2010) A map of human genome variation from population-scale sequencing. Nature, 467, 1061-1073.
    • (2010) Nature , Issue.467 , pp. 1061-1073
  • 18
    • 70350023532 scopus 로고    scopus 로고
    • Improved base calling for the Illumina Genome Analyzer using machine learning strategies
    • Kircher,M., Stenzel,U. and Kelso,J. (2009) Improved base calling for the Illumina Genome Analyzer using machine learning strategies. Genome Biol., 10, R83.
    • (2009) Genome Biol. , vol.10
    • Kircher, M.1    Stenzel, U.2    Kelso, J.3
  • 19
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 20
    • 84861337035 scopus 로고    scopus 로고
    • A new approach for detecting low-level mutations in next-generation sequence data
    • Li,M. and Stoneking,M. (2012) A new approach for detecting low-level mutations in next-generation sequence data. Genome Biol., 13, R34.
    • (2012) Genome Biol. , vol.13
    • Li, M.1    Stoneking, M.2
  • 21
    • 84855295457 scopus 로고    scopus 로고
    • Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
    • Kircher,M., Sawyer,S. and Meyer,M. (2012) Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Res., 40,-e3.
    • (2012) Nucleic Acids Res. , vol.40
    • Kircher, M.1    Sawyer, S.2    Meyer, M.3
  • 22
    • 11844296807 scopus 로고    scopus 로고
    • Multiplex polymerase chain reaction for simultaneous quantitation of human nuclear, mitochondrial, and male Y-chromosome DNA: Application in human identification
    • Walker,J.A., Hedges,D.J., Perodeau,B.P., Landry,K.E., Stoilova,N., Laborde,M.E., Shewale,J., Sinha,S.K. and Batzer,M.A. (2005) Multiplex polymerase chain reaction for simultaneous quantitation of human nuclear, mitochondrial, and male Y-chromosome DNA: Application in human identification. Anal. Biochem., 337, 89-97.
    • (2005) Anal. Biochem. , vol.337 , pp. 89-97
    • Walker, J.A.1    Hedges, D.J.2    Perodeau, B.P.3    Landry, K.E.4    Stoilova, N.5    Laborde, M.E.6    Shewale, J.7    Sinha, S.K.8    Batzer, M.A.9
  • 23
    • 56649112226 scopus 로고    scopus 로고
    • Pseudomitochondrial genome haunts disease studies
    • Yao,Y.G., Kong,Q.P., Salas,A. and Bandelt,H.J. (2008) Pseudomitochondrial genome haunts disease studies. J. Med. Genet., 45, 769-772.
    • (2008) J. Med. Genet. , vol.45 , pp. 769-772
    • Yao, Y.G.1    Kong, Q.P.2    Salas, A.3    Bandelt, H.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.