Differences in crystalline cellulose modification due to degradation by brown and white rot fungi

Fungal Biology

Volumn 116, Issue 10, 2012, Pages 1052-1063

  Hastrup, Anne Christine Steenkjær ^a   Howell, Caitlin ^b   Larsen, Flemming Hofmann ^c   Sathitsuksanoh, Noppadon ^d   Goodell, Barry ^e   Jellison, Jody ^e  

^a AALBORG UNIVERSITY   (Denmark)

^b UNIVERSITY OF HEIDELBERG   (Germany)

^c UNIVERSITY OF COPENHAGEN   (Denmark)

^d LAWRENCE BERKELEY NATIONAL LABORATORY   (United States)

^e VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

Author keywords

13C CP MAS NMR; Cellulose crystallinity; D spacing; Wood decay; X ray diffraction

Indexed keywords

LIGNIN;

BIODEGRADATION; CELLULOSE; CRYSTALLINITY; FUNGAL DISEASE; NUCLEAR MAGNETIC RESONANCE; WOOD; X-RAY DIFFRACTION;

ARTICLE; CHEMISTRY; FUNGUS; HYDROLYSIS; METABOLISM; MICROBIOLOGY; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; WOOD; X RAY DIFFRACTION;

FUNGI; HYDROLYSIS; LIGNIN; MAGNETIC RESONANCE SPECTROSCOPY; WOOD; X-RAY DIFFRACTION;

BASIDIOMYCOTA; FUNGI; GLOEOPHYLLUM TRABEUM; IRPEX LACTEUS; MERULIPORIA INCRASSATA; PYCNOPORUS (FUNGUS); PYCNOPORUS SANGUINEUS;

EID: 84867437451     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2012.07.009     Document Type: Article

References (61)

1. American Wood Preservers' Association Standard method of testing wood preservatives by laboratory soil-block cultures. Book of Standards 2003, 206-212. American Wood Preservers' Association, Granbury, TX.
2. Arantes V., Milagres A.M.F., Filley T.R., Goodell B. Lignocellulosic polysaccharides and lignin degradation by wood decay fungi: the relevance of nonenzymatic Fenton-based reactions. Journal of Industrial Microbiology and Biotechnology 2011, 38:541-555.
3. 3 desorption/adsorption onto wood: implications for brown-rot decay. International Biodeterioration and Biodegradation 2009, 63:478-483.
4. Arantes V., Saddler J.N. Access to cellulose limits the efficiency of enzymatic hydrolysis: the role of amorphogenesis. Biotechnology for Biofuels 2010, 3:4.
5. 13C NMR spectroscopy in studies of the nature of native celluloses. Solid State Nuclear Magnetic Resonance 1999, 15:1-19.
6. Baldrian P., Valkov V. Degradation of cellulose by basidiomycetous fungi. FEMS Microbiology Reviews 2008, 32:501-521.
7. Baldrian P. Mini review: wood-inhabiting ligninolytic basidiomycetes in soils: ecology and constraints for applicability in bioremediation. Fungal Ecology 2008, 1:4-12.
8. 13C high-resolution solid-state NMR for structural elucidation of archaeological woods. Progress in Nuclear Magnetic Resonance Spectroscopy 2009, 55:199-214.
9. Bennett A.E., Rienstra C.M., Auger M., Lakshmi K., Griffin R.G. Heteronuclear decoupling in rotating solids. The Journal of Chemical Physics 1995, 103:6951.
10. Cave I.D. Theory of X-ray measurement of microfibril angle in wood: part 2. Wood Science and Technology 1997, 31:225-234.
11. Cowling E.B. Comparative Biochemistry of the Decay of Sweetgum Sapwood by White-rot and Brown-rot Fungi 1961, US Department of Agriculture.
12. Cullity B.D. Elements of X-ray Diffraction 1978, Addison-Wesley Publishing Co., Inc, Reading, MA.
13. Curling S., Clausen C., Winandy J. The effect of hemicellulose degradation on the mechanical properties of wood during brown rot decay. International Research Group on Wood Preservation 2001, IRG/WP 01-20219.
14. Dutton M.V., Evans C.S. Oxalate production by fungi: its role in pathogenicity and ecology in the soil environment. Canadian Journal of Microbiology 1996, 42:881-895.
15. Eastwood D.C., Floudas D., Binder M., Majcherczyk A., Schneider P., Aerts A., Asiegbu F.O., Baker S.E., Barry K., Bendiksby M., Blumentritt M., Coutinho P.M., Cullen D., de Vries R.P., Gathman A., Goodell B., Henrissat B., Ihrmark K., Kauserud H., Kohler A., LaButti K., Lapidus A., Lavin J.L., Lee Y.-H., Lindquist E., Lilly W., Lucas S., Morin E., Murat C., Oguiza J.A., Park J., Pisabarro A.G., Riley R., Rosling A., Salamov A., Schmidt O., Schmutz J., Skrede I., Stenlid J., Wiebenga A., Xie X., Kües U., Hibbett D.S., Hoffmeister D., Högberg N., Martin F., Grigoriev I.V., Watkinson S.C. The plant cell wall decomposing machinery underlies the functional diversity of forest fungi. Science 2011, 333:762-765.
16. Flournoy D.S., Kirk T.K., Highley T. Wood decay by brown-rot fungi: changes in pore structure and cell wall volume. Holzforschung 1991, 45:383-388.
17. Goodell B., Jellison J., Liu J., Daniel G., Paszczynski A., Fekete F., Krishnamurthy S., Jun L., Xu G. Low molecular weight chelators and phenolic compounds isolated from wood decay fungi and their role in the fungal biodegradation of wood. Journal of Biotechnology 1997, 53:133-162.
18. Goodell B., Qian Y., Jellison J., Richard M., Qi W. Lignocellulose oxidation by low molecular weight metal-binding compounds isolated from wood degrading fungi: a comparison of brown rot and white rot systems and the potential application of chelator-mediated Fenton reactions. Progress in Biotechnology 2002, 21:37-47.
19. Green F., Clausen C.A. Copper tolerance of brown-rot fungi: time course of oxalic acid production. International Biodeterioration and Biodegradation 2003, 51:145-149.
20. Green F., Larsen M., Hackney J., Clausen C., Highley T. Acid-mediated depolymerization of cellulose during incipient brown-rot decay by Postia placenta. Biotechnology in the Pulp and Paper Industry 1992, Uni Publishers, Kyoto, Japan. M. Kuwahara, M. Shimada (Eds.).
21. Hall M., Bansal P., Lee J.H., Realff M.J., Bommarius A.S. Cellulose crystallinity - a key predictor of the enzymatic hydrolysis rate. FEBS Journal 2010, 277:1571-1582.
22. Hammel K.E., Kapich A.N., Jensen K.A., Ryan Z.C. Reactive oxygen species as agents of wood decay by fungi. Enzyme and Microbial Technology 2002, 30:445-453.
23. Hastrup ACS, 2011. Aspects of Cellulose Degradation by Brown Rot Fungi - involvement of enzymatic and non-enzymatic decay processes including oxalic acid regulation and metal sequestering. Dissertation, University of Copenhagen, Denmark.
24. Hastrup A.C.S., Green F., Clausen C.A., Jensen B. Tolerance of Serpula lacrymans to copper-based wood preservatives. International Biodeterioration and Biodegradation 2005, 56:173-177.
25. Hastrup A.C.S., Howell C., Jensen B., Green F. Non-enzymatic depolymerization of cotton cellulose by fungal mimicking metabolites. International Biodeterioration and Biodegradation 2011, 65:553-559.
26. 2 on growth rate, wood decay and oxalic acid accumulation in Serpula lacrymans and related brown-rot fungi. Holzforschung 2006, 60:339-345.
27. Hastrup ACS, Jensen TØ, Jensen B, 2012a. Detection of iron-chelating and iron-reducing compounds in four brown-rot fungi. Holzforschung, in press.
28. Hastrup ACS, Green F III, Lebow P, Jensen B, 2012b. Enzymatic oxalic acid regulation correlated with wood degradation in four brown rot fungi. International Biodeterioration and Biodegradation, in press.
29. 13CP/MAS NMR and FT-IR study of low-temperature lignin pyrolysis. Holzforschung 1985, 39:289-296.
30. Highley T. Hemicellulases of white- and brown-rot fungi: time course of oxalic acid production. Material und Organismen 1976, 11:33-46.
31. Himmel M.E., Ding S.Y., Johnson D.K., Adney W.S., Nimlos M.R., Brady J.W., Foust T.D. Biomass recalcitrance: engineering plants and enzymes for biofuels production. Science 2007, 315:804-807.
32. Howell C., Hastrup A.C.S., Goodell B., Jellison J. Temporal changes in wood crystalline cellulose during degradation by brown rot fungi. International Biodeterioration and Biodegradation 2009, 63:414-419.
33. Howell C., Hastrup A.C.S., Jara R., Larsen F.H., Goodell B., Jellison J. Effects of hot water extraction and fungal decay on wood crystalline cellulose structure. Cellulose 2011, 18:1179-1190.
34. Howell C., Hastrup A.C.S., Jellison J. The use of X-ray diffraction for analyzing biomodification of crystalline cellulose by wood decay fungi. International Research Group on Wood Preservation 2007, IRG/WP 07-10622.
35. Howell C., Paredes J.J., Jellison J. Decay resistance properties of hot water extracted oriented strandboard. Wood and Fiber Science 2009, 41:201-208.
36. Hyde S.M., Wood P.M. A mechanism for production of hydroxyl radicals by the brown-rot fungus Coniophora puteana: Fe (III) reduction by cellobiose dehydrogenase and Fe (II) oxidation at a distance from the hyphae. Microbiology 1997, 143:259-266.
37. Kleman-Leyer K., Agosin E., Conner A.H., Kirk T.K. Changes in molecular size distribution of cellulose during attack by white rot and brown rot fungi. Applied and Environmental Microbiology 1992, 58:1266-1270.
38. 13C NMR investigation of molecular ordering in celluloses. Carbohydrate Research 1997, 302:19-25.
39. Lichtenegger H., Muller M., Paris O., Riekel C.H., Fratzl P. Imaging of the helical arrangement of cellulose fibrils in wood by synchrotron X-ray micro-diffraction. Journal of Applied Crystallography 1999, 32:1127-1133.
40. Martínez A.T., Rencoret J., Nieto L., Jiménez-Barbero J., Gutiérez A., del Río J.C. Selective lignin and polysaccharide removal in natural fungal decay of wood as evidenced by in situ structural analyses. Environmental Microbiology 2011, 13:96-107.
41. Martínez á T., Speranza M., Ruiz-Dueñas F.J., Ferreira P., Camarero S., Guillén F., Martínez M.J., Gutiérrez A., Río J.C. Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. International Microbiology 2005, 8:195-204.
42. Martinez D., Challacombe J., Morgenstern I., Hibbett D., Schmoll M., Kubicek C.P., Ferreira P., Ruiz-Duenas F.J., Martinez A.T., Kersten P. Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion. Proceedings of the National Academy of Sciences 2009, 106:1954.
43. Matthews J.F., Bergenstråhle M., Beckham G.T., Himmel M.E., Nimlos M.R., Brady J.W., Crowley M.F. High-temperature behavior of cellulose I. Journal of Physical Chemistry B 2011, 115:2155-2166.
44. Moxley G., Zhang Y.H.P. More accurate determination of acid-labile carbohydrates in lignocellulose by modified quantitative saccharification. Energy and Fuels 2007, 21:3684-3688.
45. Newman R.H., Hemmingson J.A. Carbon-13 NMR distinction between categories of molecular order and disorder in cellulose. Cellulose 1995, 2:95-110.
46. Nishiyama Y. Structure and properties of the cellulose microfibril. Journal of Wood Science 2009, 55:241-249.
47. Nishiyama Y., Langan P., Chanzy H. Crystal structure and hydrogen-bonding system in cellulose Iβ from synchrotron X-ray and neutron fiber diffraction. Journal of the American Chemical Society 2002, 124:9074-9082.
48. Pandey K.K., Pitman A.J. FTIR studies of the changes in wood chemistry following decay by brown-rot and white-rot fungi. International Biodeterioration and Biodegradation 2003, 52:151-160.
49. Peersen O.B., Wu X., Kustanovich I., Smith S.O. Variable-amplitude cross-polarization MAS NMR. Journal of Magnetic Resonance A 1993, 104:334-339.
50. Rietveld H.M. A profile refinement method for nuclear and magnetic structures. Journal of Applied Crystallography 1969, 2:65-71.
51. Schilling J.S., Jellison J. Metal accumulation without enhanced oxalate secretion in wood degraded by brown rot fungi. Applied and Environmental Microbiology 2006, 72:5662-5665.
52. Sluiter A., Hames B., Ruiz R., Scarlata C., Sluiter J., Templeton D., Crocker D. Determination of structural carbohydrates and lignin in biomass. Laboratory Analytical Procedure 2008, NREL/TP-510-42618.
53. Thygesen A., Oddershede J., Lilholt H., Thomsen A.B., Ståhl K. On the determination of crystallinity and cellulose content in plant fibres. Cellulose 2005, 12:563-576.
54. Thygesen L.G., Hidayat B.J., Johansen K.S., Felby C. Role of supramolecular cellulose structures in enzymatic hydrolysis of plant cell walls. Journal of Industrial Microbiology and Biotechnology 2011, 38:975-983.
55. Tuor U., Winterhalter K., Fiechter A. Enzymes of white-rot fungi involved in lignin degradation and ecological determinants for wood decay. Journal of Biotechnology 1995, 41:1-17.
56. VanderHart D.L., Atalla R. Studies of microstructure in native celluloses using solid-state carbon-13 NMR. Macromolecules 1984, 17:1465-1472.
57. Wold S., Esbensen K., Geladi P. Principal component analysis. Chemometrics and Intelligent Laboratory Systems 1987, 2:37-52.
58. Yelle D.J., Ralph J., Lu F., Hammel K.E. Evidence for cleavage of lignin by a brown rot basidiomycete. Environmental Microbiology 2008, 10:1844-1849.
59. Yelle D.J., Wei D., Ralph J., Hammel K.E. Multidimensional NMR analysis reveals truncated lignin structures in wood decayed by the brown rot basidiomycete Postia placenta. Environmental Microbiology 2011, 13:1091-1100.
60. Zabel R.A., Morrell J.J. Wood Microbiology: decay and its prevention 1992, Academic press, Inc., San Diego.
61. Zhao H., Kwak J.H., Conrad Zhang Z., Brown H.M., Arey B.W., Holladay J.E. Studying cellulose fiber structure by SEM, XRD, NMR and acid hydrolysis. Carbohydrate Polymers 2007, 68:235-241.