Developing tools for investigating the multiple roles of ethylene: Identification and mapping genes for ethylene biosynthesis and reception in barley

Molecular Genetics and Genomics

Volumn 287, Issue 10, 2012, Pages 793-802

  Dahleen, Lynn S ^a   Tyagi, Neerja ^b   Bregitzer, Phil ^a   Brown, Ryan H ^a   Morgan, William C ^a  

^a U S DEPARTMENT OF AGRICULTURE   (United States)

^b NORTH DAKOTA STATE UNIVERSITY   (United States)

Author keywords

1 aminocyclopropane 1 carboxylic acid synthase; ACC oxidase; High resolution melt analysis; Hordeum vulgare

Indexed keywords

ETHYLENE; PHYTOHORMONE;

1 AMINOCYCLOPROPANECARBOXYLIC ACID OXIDASE GENE; 1 AMINOCYCLOPROPANECARBOXYLIC ACID SYNTHASE GENE; ARTICLE; BARLEY; BIOSYNTHESIS; CHROMOSOME MAP; CONTROLLED STUDY; ETHYLENE BIOSYNTHESIS; ETHYLENE RECEPTOR GENE; GENE DUPLICATION; GENE IDENTIFICATION; GENE LOCATION; GENE MAPPING; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; ORTHOLOGY; PLANT CHROMOSOME; PLANT GENE; PLANT GENOME; PLANT REGENERATION; PLANT RESPONSE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; SYNTENY;

CHROMOSOME MAPPING; ETHYLENES; GENOME, PLANT; HORDEUM; POLYMORPHISM, SINGLE NUCLEOTIDE; QUANTITATIVE TRAIT LOCI;

HORDEUM; HORDEUM VULGARE; HORDEUM VULGARE SUBSP. VULGARE; VIRIDIPLANTAE;

EID: 84867397508     PISSN: 16174615     EISSN: 16174623     Source Type: Journal    
DOI: 10.1007/s00438-012-0716-6     Document Type: Article

References (47)

1. Alpert M, Wanamaker S, Duma D, Fenton RD, Ma Y, Muehlbauer GJ, Lonardi S, Close TJ (2011) A genome sequence resource for barley. Barley Genet Newsl 41:10-11
2. Biddington NL (1992) The influence of ethylene in plant tissue culture. Plant Growth Regul 11:173-187
3. Bleeker AB, Kende H (2000) Ethylene: a gaseous signal molecule in plants. Annu Rev Cell Dev Biol 16:1-18
4. Bleeker AB, Esch JJ, Hall AE, Rodriguez FI, Binder BM (1998) The ethylene-receptor family from Arabidopsis: structure and function. Philos Trans R Soc Lond B 353:1405-1412
5. Bregitzer P, Campbell RD (2001) Genetic markers associated with green and albino plant regeneration from embryogenic barley callus. Crop Sci 41:173-179
6. Broekaert WF, Delaure SL, De Bolle MFC, Cammue BPA (2006) The role of ethylene in host-pathogen interactions. Annu Rev Phytopathol 44:393-416
7. Brown RH, Dahleen L, Bregitzer P (2012) An efficient method for flanking sequence isolation in barley. Crop Sci 52:1229-1234
8. Cannon SB, Mitra A, Baumgarten A, Young ND, May G (2004) The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana. BMC Plant Biol 4:10
9. Chen F, Ro D-K, Petri J, Gershenzon J, Bohlmann J, Pichersky E, Tholl D (2004) Characterization of a root-specific Arabidopsis terpene synthase responsible for the formation of the volatile monoterpene 1,8-cineole. Plant Phys 135:1956-1966
10. Chen Y-F, Etheridge N, Schaller GE (2005) Ethylene signal transduction. Ann Bot 95:901-915
11. Chen X, Steed A, Travella S, Keller B, Nicholson P (2009) Fusarium graminearum exploits ethylene signaling to colonize dicotyledonous and monocotyledonous plants. New Phytol 182:975-983
12. Cho U-H, Kasha KJ (1989) Ethylene production and embryogenesis from anther cultures of barley (Hordeum vulgare). Plant Cell Rep 8:415-417
13. Chutimanitsakun Y, Nipper RW, Cuesta-Marcos A, Cistue L, Corey A, Filichkina T, Johnson EA, Hayes PM (2011) Construction and application for QTL analysis of a restriction site associated DNA (RAD) linkage map in barley. BMC Genomics 12:4
14. Costa JM, Corey A, Hayes PM, Jobet C, Kleinhofs A, Kopisch- Obusch A, Kramer SF, Kidrna D, Li M, Riera-Lizarazu O, Sato K, Szucs P, Toojinda T, Vales MI, Wolfe RI (2001) Molecular mapping of the Oregon Wolfe Barleys: a phenotypically polymorphic doubled-haploid population. Theor Appl Genet 103:415-424
15. Faris JD, Haen KM, Gill BS (2000) Saturation mapping of a gene-rich recombination hot spot region in wheat. Genetics 154:823-835
16. Flagel LE, Wendel JF (2009) Gene duplication and evolutionary novelty in plants. New Phytol 183:557-564
17. Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
18. Hamajima N, Saito T, Matsuo K, Tajima K (2002) Competitive amplification and unspecific amplification in polymerase chain reaction with confronting two-pair primers. JMolDiagn 4:103-107
19. Hofinger BJ, Jing H-C, Hammond-Kosack KE, Kanyuka K (2009) High-resolution melting analysis of cDNA-derived PCR amplicons for rapid and cost-effective identification of novel alleles in barley. Theor Appl Genet 119:851-865
20. Islam AKMR (1983) Ditelosomic additions of barley chromosomes to wheat. In: Sakamoto S (ed) Proceedings of the 6th International Wheat Genetics Symposium, Kyoto, Japan, 28 November-3 December 1983. Kyoto University Press, Kyoto, Japan pp 233-238
21. Islam AKRM, Shepherd KW (1990) Incorporation of barley chromosomes in wheat. In: Bajaj YPS (ed) Biotechnology in agriculture and forestry, vol 13. Springer, Berlin, pp 128-151
22. Iwai T, Miyasaka A, Seo S, Ohashi Y (2006) Contribution of ethylene biosynthesis for resistance to blast fungus infection in young rice plants. Plant Physiol 142:1202-1215
23. Jha AK, Dahleen LS, Suttle JC (2007) Ethylene influences green plant regeneration from barley callus. Plant Cell Rep 26:285-290
24. Kota R, Varshney RK, Prasad M, Zhang H, Stein N, Graner A (2008) EST-derived single nucleotide polymorphism markers for assembling genetic and physical maps of the barley genome. Funct Integr Genomics 8:223-233
25. Kumar PP, Lakshmanan P, Thorpe TA (1998) Regulation of morphogenesis in plant tissue culture by ethylene. In Vitro Cell Dev Biol Plant 34:94-103
26. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L (1987) MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1:174-181
27. Lehmensiek A, Sutherland MW, McNamara RB (2008) The use of high resolution melting (HRM) to map single nucleotide polymorphism markers linked to a covered smut resistance gene in barley. Theor Appl Genet 117:721-728
28. Li G, Yen Y (2008) Jasmonate and ethylene signaling pathway may mediate Fusarium head blight resistance in wheat. Crop Sci 48:1888-1896
29. Lin Z, Zhong S, Grierson D (2009) Recent advances in ethylene research. J Exp Bot 60:3311-3336
30. Mano Y, Takeda K (1997) Mapping quantitative trait loci for salt tolerance at germination and the seedling stage in barley (Hordeum vulgare L.). Euphytica 94:263-272
31. Mano Y, Takahashi H, Sato K, Takeda K (1996) Mapping genes for callus growth and shoot regeneration in barley (Hordeum vulgare L.). Breed Sci 46:137-142
32. Muñoz-Amatriaín M, Moscou MJ, Bhat PR, Svensson JT, Bartoš J, Suchánková P, Šimdová H, Endo TR, Fenton RD, Lonardi S, Castillo AM, Shao S, Cistué L, Cuesta-Marcos A, Forrest KL, Hayden MJ, Hayes PM, Horsley RD, Makoto K, Moody D, Sato K, Vallés MP, Wulff BBH, Muehlbauer GJ, Doležel J, Close TJ (2011) An improved consensus linkage map of barley based on flow-sorted chromosomes and single nucleotide polymorphism markers. Plant Genome 4:238-249
33. Potokina E, Druka A, Luo Z, Wise R, Waugh R, Kearsey M (2008) Gene expression quantitative trait locus analysis of 16000 barley genes reveals a complex pattern of genome-wide transcriptional regulation. Plant J 53:90-101
34. Rostoks N, Mudie S, Cardle L, Russell J, Ramsay L, Booth A, Svensson JT, Wanamaker SI, Walia H, Rodriguez EM, Hedley PE, Liu H, Morris J, Close TJ, Marshall DF, Waugh R (2005) Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress. Mol Gen Genomics 274:515-527
35. Russell J, Booth A, Fuller J, Harrower B, Hedley P, Machray G, Powell W (2004) A comparison of sequence-based polymorphism and haplotype content in transcribed and anonymous regions of the barley genome. Genome 47:389-398
36. Rzewuski G, Sauter M (2008) Ethylene biosynthesis and signaling in rice. Plant Sci 175:32-42
37. Sato K, Takeda K (2009) An application of high-throughput SNP genotyping for barley genome mapping and characterization of recombinant chromosome substitution lines. Theor Appl Genet 119:613-619
38. Schaller GE, Kieber JJ (2002) Ethylene. Arabidopsis Book 1:1-18
39. Thomas WTB, Powell W, Swanston JS, Ellis RP, Chalmers KJ, Barua UM, Jack P, Lea V, Forster BP, Waugh R, Smith DB (1996) Quantitative trait loci for germination and malting characters in a spring barley cross. Crop Sci 36:265-273
40. Tsuchisaka A, Yu G, Jin H, Alonso JM, Ecker JR, Zhang X, Gao S, Theologis A (2009) A combinatorial interplay among the 1-aminocyclopropane-1-carboxylate isoforms regulates ethylene biosynthesis in Arabidopsis thaliana. Genetics 183:979-1003
41. Tyagi N, Dahleen LS (2011) Short term ethylene manipulation influences regeneration in barley. J Plant Mol Biol Biotechnol 2:47-55
42. Tyagi N, Dahleen LS, Bregitzer P (2010) Identification of candidate genes within tissue culture regeneration QTL revisited with a linkage map based on transcript-derived markers. Crop Sci 50:1697-1707
43. Varshney RK, Thiel T, Sretenovic-Rajicic T, Baum M, Valkoun J, Guo P, Grando S, Ceccarelli S, Graner A (2008) Identification and validation of a core set of informative genic SSR and SNP markers for assaying functional diversity in barley. Mol Breed 22:1-13
44. Watanabe H, Saigusa M, Hase S, Hayakawa T, Satoh S (2004) Cloning of a cDNA encoding an ETR2-like protein (Os-ERL1) from deep water rice (Oryza sativa L.) and increase in its mRNA level by submergence, ethylene, and gibberellin treatments. J Exp Bot 55:1145-1148
45. Wicker T, Mayer KFX, Gundlach H, Martis M, Steuemagel B, Scholz U, Šmiková H, Kubaláková M, Choulet F, Taudien S, Platzer M, Feuillet C, Fahima T, Budak H, Doležel J, Keller B, Stein N (2011) Frequent gene movement and pseudogene evolution is common to the large and complex genomes of wheat, barley, and their relatives. Plant Cell 23:1706-1718
46. Yamagami T, Tsuchisaka A, Yamada K, Haddon WF, Harden LA, Theologis A (2003) Biochemical diversity among the 1-aminocyclopropane- 1-carboxylate synthase enzymes encoded by the Arabidopsis gene family. J Biol Chem 278:49102-49112
47. Yau CP, Wang L, Yu M, Zee SY, Yip WK (2004) Differential expression of three genes encoding an ethylene receptor in rice during development, and in response to indole-3-acetic acid and silver ions. J Exp Bot 55:547-556