-
1
-
-
33645242206
-
Phenotypic characterization of Streptococcus pneumoniae biofilm development
-
Allegrucci M, et al. 2006. Phenotypic characterization of Streptococcus pneumoniae biofilm development. J. Bacteriol. 188: 2325-2335.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 2325-2335
-
-
Allegrucci, M.1
-
2
-
-
33947431650
-
Characterization of colony morphology variants isolated from Streptococcus pneumoniae biofilms
-
Allegrucci M, Sauer K. 2007. Characterization of colony morphology variants isolated from Streptococcus pneumoniae biofilms. J. Bacteriol. 189: 2030-2038.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 2030-2038
-
-
Allegrucci, M.1
Sauer, K.2
-
3
-
-
0026416459
-
Effects on carbon and oxygen limitations and calcium concentrations on biofilm removal processes Biotechnol
-
Applegate DH, Bryers JD. 1991. Effects on carbon and oxygen limitations and calcium concentrations on biofilm removal processes Biotechnol. Bioeng. 37: 17-25.
-
(1991)
Bioeng
, vol.37
, pp. 17-25
-
-
Applegate, D.H.1
Bryers, J.D.2
-
4
-
-
33750479893
-
Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa
-
Barraud N, et al. 2006. Involvement of nitric oxide in biofilm dispersal of Pseudomonas aeruginosa. J. Bacteriol. 188: 7344-7353.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 7344-7353
-
-
Barraud, N.1
-
5
-
-
72249092095
-
Nitric oxide signaling in Pseudomonas aeruginosa biofilms mediates phosphodiesterase activity, decreased cyclic di-GMP levels, and enhanced dispersal
-
Barraud N, et al. 2009. Nitric oxide signaling in Pseudomonas aeruginosa biofilms mediates phosphodiesterase activity, decreased cyclic di-GMP levels, and enhanced dispersal. J. Bacteriol. 191: 7333-7342.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 7333-7342
-
-
Barraud, N.1
-
7
-
-
2942545825
-
Methylationindependent aerotaxis mediated by the Escherichia coli Aer protein
-
Bibikov SI, Miller AC, Gosink KK, Parkinson JS. 2004. Methylationindependent aerotaxis mediated by the Escherichia coli Aer protein. J. Bacteriol. 186: 3730-3737.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 3730-3737
-
-
Bibikov, S.I.1
Miller, A.C.2
Gosink, K.K.3
Parkinson, J.S.4
-
8
-
-
20444385050
-
The phosphodiesterase activity of the HmsP EAL domain is required for negative regulation of biofilm formation in Yersinia pestis FEMS Microbiol
-
Bobrov AG, Kirillina O, Perry PD. 2005. The phosphodiesterase activity of the HmsP EAL domain is required for negative regulation of biofilm formation in Yersinia pestis FEMS Microbiol. Lett. 247: 123-130.
-
(2005)
Lett.
, vol.247
, pp. 123-130
-
-
Bobrov, A.G.1
Kirillina, O.2
Perry, P.D.3
-
9
-
-
77954839079
-
Gain-of-function mutations cluster in distinct regions associated with the signalling pathway in the PAS domain of the aerotaxis receptor
-
Campbell AJ, Watts KJ, Johnson MS, Taylor BL. 2010. Gain-of-function mutations cluster in distinct regions associated with the signalling pathway in the PAS domain of the aerotaxis receptor, Aer. Mol. Microbiol. 77: 575-586.
-
(2010)
Aer. Mol. Microbiol.
, vol.77
, pp. 575-586
-
-
Campbell, A.J.1
Watts, K.J.2
Johnson, M.S.3
Taylor, B.L.4
-
10
-
-
0035313335
-
Recent advances in heme-protein sensors
-
Chan MK. 2001. Recent advances in heme-protein sensors. Curr. Opin. Chem. Biol. 5: 216-222.
-
(2001)
Curr. Opin. Chem. Biol.
, vol.5
, pp. 216-222
-
-
Chan, M.K.1
-
11
-
-
0033591467
-
Bacterial biofilms: a common cause of persistent infections
-
Costerton JW, Stewart PS, Greenberg EP. 1999. Bacterial biofilms: a common cause of persistent infections. Science 284: 1318-1322.
-
(1999)
Science
, vol.284
, pp. 1318-1322
-
-
Costerton, J.W.1
Stewart, P.S.2
Greenberg, E.P.3
-
12
-
-
4444250897
-
Cyclic di-GMP as a bacterial second messenger
-
D'Argenio DA, Miller SI. 2004. Cyclic di-GMP as a bacterial second messenger. Microbiology 150: 2497-2502.
-
(2004)
Microbiology
, vol.150
, pp. 2497-2502
-
-
D'Argenio, D.A.1
Miller, S.I.2
-
13
-
-
0034646392
-
Dos, a heme-binding PAS protein from Escherichia coli, is a direct oxygen sensor
-
Delgado-Nixon VM, Gonzalez G, Gilles-Gonzalez M-A. 2000. Dos, a heme-binding PAS protein from Escherichia coli, is a direct oxygen sensor. Biochemistry 39: 2685-2691.
-
(2000)
Biochemistry
, vol.39
, pp. 2685-2691
-
-
Delgado-Nixon, V.M.1
Gonzalez, G.2
Gilles-Gonzalez, M.-A.3
-
14
-
-
33750009613
-
Differentiation between electron transport sensing and proton motive force sensing by the Aer and Tsr receptors for aerotaxis
-
Edwards JC, Johnson MS, Taylor BL. 2006. Differentiation between electron transport sensing and proton motive force sensing by the Aer and Tsr receptors for aerotaxis. Mol. Microbiol. 62: 823-837.
-
(2006)
Mol. Microbiol.
, vol.62
, pp. 823-837
-
-
Edwards, J.C.1
Johnson, M.S.2
Taylor, B.L.3
-
15
-
-
0027379284
-
An overview of nosocomial infections, including the role of the microbiology laboratory
-
Emori TG, Gaynes RP. 1993. An overview of nosocomial infections, including the role of the microbiology laboratory. Clin. Microbiol. Rev. 6: 428-442.
-
(1993)
Clin. Microbiol. Rev.
, vol.6
, pp. 428-442
-
-
Emori, T.G.1
Gaynes, R.P.2
-
16
-
-
0000527903
-
Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans
-
Figurski DH, Helinski DR. 1979. Replication of an origin-containing derivative of plasmid RK2 dependent on a plasmid function provided in trans. Proc. Natl. Acad. Sci. U. S. A. 76: 1648-1652.
-
(1979)
Proc. Natl. Acad. Sci. U. S. A.
, vol.76
, pp. 1648-1652
-
-
Figurski, D.H.1
Helinski, D.R.2
-
17
-
-
42649125235
-
NO sensing in Pseudomonas aeruginosa: structure of the transcriptional regulator DNR
-
Giardina G, et al. 2008. NO sensing in Pseudomonas aeruginosa: structure of the transcriptional regulator DNR. J. Mol. Biol. 378: 1002-1015.
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 1002-1015
-
-
Giardina, G.1
-
18
-
-
18944375979
-
Characterization of starvation-induced dispersion in Pseudomonas putida biofilms
-
Gjermansen M, Ragas P, Sternberg C, Molin S, Tolker-Nielsen T. 2005. Characterization of starvation-induced dispersion in Pseudomonas putida biofilms. Environ. Microbiol. 7: 894-904.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 894-904
-
-
Gjermansen, M.1
Ragas, P.2
Sternberg, C.3
Molin, S.4
Tolker-Nielsen, T.5
-
19
-
-
0033764531
-
Quantification of biofilm structures by the novel computer program COMSTAT
-
Heydorn A, et al. 2000. Quantification of biofilm structures by the novel computer program COMSTAT. Microbiology 146: 2395-2407.
-
(2000)
Microbiology
, vol.146
, pp. 2395-2407
-
-
Heydorn, A.1
-
20
-
-
0020792024
-
Luminometric determination of FAD in subpicomole quantities
-
Hinkkanen A, Decker K. 1983. Luminometric determination of FAD in subpicomole quantities. Anal. Biochem. 132: 202-208.
-
(1983)
Anal. Biochem.
, vol.132
, pp. 202-208
-
-
Hinkkanen, A.1
Decker, K.2
-
21
-
-
0027184569
-
PAS is a dimerization domain common to Drosophila Period and several transcription factors
-
Huang ZJ, Edery I, Rosbash M. 1993. PAS is a dimerization domain common to Drosophila Period and several transcription factors. Nature 364: 259-262.
-
(1993)
Nature
, vol.364
, pp. 259-262
-
-
Huang, Z.J.1
Edery, I.2
Rosbash, M.3
-
22
-
-
0028814991
-
Digital image analysis of growth and starvation responses of a surface-colonizing Acinetobacter sp
-
James GA, Korber DR, Caldwell DE, Costerton JW. 1995. Digital image analysis of growth and starvation responses of a surface-colonizing Acinetobacter sp. J. Bacteriol. 177: 907-915.
-
(1995)
J. Bacteriol.
, vol.177
, pp. 907-915
-
-
James, G.A.1
Korber, D.R.2
Caldwell, D.E.3
Costerton, J.W.4
-
23
-
-
34147096980
-
The transition metal gallium disrupts Pseudomonas aeruginosa iron metabolism and has antimicrobial and antibiofilm activity
-
Kaneko Y, Thoendel M, Olakanmi O, Britigan BE, Singh PK. 2007. The transition metal gallium disrupts Pseudomonas aeruginosa iron metabolism and has antimicrobial and antibiofilm activity. J. Clin. Invest. 117: 877-888.
-
(2007)
J. Clin. Invest.
, vol.117
, pp. 877-888
-
-
Kaneko, Y.1
Thoendel, M.2
Olakanmi, O.3
Britigan, B.E.4
Singh, P.K.5
-
24
-
-
0030916198
-
PAS, present, and future: clues to the origins of circadian clocks
-
Kay SA. 1997. PAS, present, and future: clues to the origins of circadian clocks. Science 276: 753-754.
-
(1997)
Science
, vol.276
, pp. 753-754
-
-
Kay, S.A.1
-
25
-
-
0014871777
-
Enzymic determination of uracil nucleotides in tissues
-
Keppler D, Rudigier J, Decker K. 1970. Enzymic determination of uracil nucleotides in tissues. Analyt. Biochem. 38: 105-114.
-
(1970)
Analyt. Biochem.
, vol.38
, pp. 105-114
-
-
Keppler, D.1
Rudigier, J.2
Decker, K.3
-
26
-
-
36549021125
-
BifA, a cyclic-Di-GMP phosphodiesterase, inversely regulates biofilm formation and swarming motility by Pseudomonas aeruginosa PA14
-
Kuchma SL, et al. 2007. BifA, a cyclic-Di-GMP phosphodiesterase, inversely regulates biofilm formation and swarming motility by Pseudomonas aeruginosa PA14. J. Bacteriol. 189: 8165-8178.
-
(2007)
J. Bacteriol.
, vol.189
, pp. 8165-8178
-
-
Kuchma, S.L.1
-
27
-
-
33644516891
-
Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3=-5=)-cyclic-GMP in virulence
-
Kulasakara H, et al. 2006. Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3=-5=)-cyclic-GMP in virulence. Proc. Natl. Acad. Sci. U. S. A. 103: 2839-2844.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 2839-2844
-
-
Kulasakara, H.1
-
28
-
-
33744958560
-
The cytoplasmic heme-binding protein (PhuS) from the heme uptake system of Pseudomonas aeruginosa is an intracellular heme-trafficking protein to the -regioselective heme oxygenase
-
Lansky IB, et al. 2006. The cytoplasmic heme-binding protein (PhuS) from the heme uptake system of Pseudomonas aeruginosa is an intracellular heme-trafficking protein to the -regioselective heme oxygenase. J. Biol. Chem. 281: 13652-13662.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 13652-13662
-
-
Lansky, I.B.1
-
29
-
-
0031775913
-
Isolation and characterization of an extracellular haem-binding protein from Pseudomonas aeruginosa that shares function and sequence similarities with the Serratia marcescens HasA haemophore
-
Létoffé S, Redeker V, Wandersman C. 1998. Isolation and characterization of an extracellular haem-binding protein from Pseudomonas aeruginosa that shares function and sequence similarities with the Serratia marcescens HasA haemophore. Mol. Microbiol. 28: 1223-1234.
-
(1998)
Mol. Microbiol.
, vol.28
, pp. 1223-1234
-
-
Létoffé, S.1
Redeker, V.2
Wandersman, C.3
-
30
-
-
0029017976
-
Protein-protein interaction via PAS domains: role of the PAS domain in positive and negative regulation of the bHLH/PAS dioxin receptor-Arnt transcription factor complex
-
Lindebro MC, Poellinger L, Whitelaw ML. 1995. Protein-protein interaction via PAS domains: role of the PAS domain in positive and negative regulation of the bHLH/PAS dioxin receptor-Arnt transcription factor complex. EMBO J. 14: 3528-3539.
-
(1995)
EMBO J
, vol.14
, pp. 3528-3539
-
-
Lindebro, M.C.1
Poellinger, L.2
Whitelaw, M.L.3
-
31
-
-
0029611034
-
The basic helix-loop-helix/PAS factor Sim is associated with hsp90
-
McGuire J, Coumailleau P, Whitelaw ML, Gustafsson JA, Poellinger L. 1995. The basic helix-loop-helix/PAS factor Sim is associated with hsp90. J. Biol. Chem. 270: 31353-31357.
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 31353-31357
-
-
McGuire, J.1
Coumailleau, P.2
Whitelaw, M.L.3
Gustafsson, J.A.4
Poellinger, L.5
-
32
-
-
70349777587
-
Structure and signaling mechanism of Per-ARNT-Sim domains
-
Möglich A, Ayers RA, Moffat K. 2009. Structure and signaling mechanism of Per-ARNT-Sim domains. Structure 17: 1282-1294.
-
(2009)
Structure
, vol.17
, pp. 1282-1294
-
-
Möglich, A.1
Ayers, R.A.2
Moffat, K.3
-
33
-
-
33750429987
-
BdlA, a chemotaxis regulator essential for biofilm dispersion in Pseudomonas aeruginosa
-
Morgan R, Kohn S, Hwang S-H, Hassett DJ, Sauer K. 2006. BdlA, a chemotaxis regulator essential for biofilm dispersion in Pseudomonas aeruginosa. J. Bacteriol. 188: 7335-7343.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 7335-7343
-
-
Morgan, R.1
Kohn, S.2
Hwang, S.-H.3
Hassett, D.J.4
Sauer, K.5
-
34
-
-
0033580277
-
Broad-host-range expression vectors that carry the arabinose-inducible Escherichia coli araBAD promoter and the araC regulator
-
Newman JR, Fuqua C. 1999. Broad-host-range expression vectors that carry the arabinose-inducible Escherichia coli araBAD promoter and the araC regulator. Gene 227: 197-203.
-
(1999)
Gene
, vol.227
, pp. 197-203
-
-
Newman, J.R.1
Fuqua, C.2
-
35
-
-
0032568630
-
Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily
-
Pellequer J-L, Wager-Smith KA, Kay SA, Getzoff ED. 1998. Photoactive yellow protein: a structural prototype for the three-dimensional fold of the PAS domain superfamily. Proc. Natl. Acad. Sci. U. S. A. 95: 5884-5890.
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 5884-5890
-
-
Pellequer, J.-L.1
Wager-Smith, K.A.2
Kay, S.A.3
Getzoff, E.D.4
-
36
-
-
73549110327
-
A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development
-
doi: 10.1371/journal.ppat.1000668
-
Petrova OE, Sauer K. 2009. A novel signaling network essential for regulating Pseudomonas aeruginosa biofilm development. PLoS Pathog. 5: e1000668. doi: 10.1371/journal.ppat.1000668.
-
(2009)
PLoS Pathog
, vol.5
-
-
Petrova, O.E.1
Sauer, K.2
-
37
-
-
0034029031
-
PAS domain residues involved in signal transduction by the Aer redox sensor of Escherichia coli
-
Repik A, et al. 2000. PAS domain residues involved in signal transduction by the Aer redox sensor of Escherichia coli. Mol. Microbiol. 36: 806-816.
-
(2000)
Mol. Microbiol.
, vol.36
, pp. 806-816
-
-
Repik, A.1
-
38
-
-
84864003643
-
The phosphodiesterase DipA (PA5017) is essential for Pseudomonas aeruginosa biofilm dispersion
-
Roy AB, Petrova OE, Sauer K. 2012. The phosphodiesterase DipA (PA5017) is essential for Pseudomonas aeruginosa biofilm dispersion. J. Bacteriol. 194: 2904-2915.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2904-2915
-
-
Roy, A.B.1
Petrova, O.E.2
Sauer, K.3
-
39
-
-
0036157549
-
Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm
-
Sauer K, Camper AK, Ehrlich GD, Costerton JW, Davies DG. 2002. Pseudomonas aeruginosa displays multiple phenotypes during development as a biofilm. J. Bacteriol. 184: 1140-1154.
-
(2002)
J. Bacteriol.
, vol.184
, pp. 1140-1154
-
-
Sauer, K.1
Camper, A.K.2
Ehrlich, G.D.3
Costerton, J.W.4
Davies, D.G.5
-
40
-
-
6044226882
-
Characterization of nutrient-induced dispersion in Pseudomonas aeruginosa PAO1 biofilm
-
Sauer K, et al. 2004. Characterization of nutrient-induced dispersion in Pseudomonas aeruginosa PAO1 biofilm. J. Bacteriol. 186: 7312-7326.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7312-7326
-
-
Sauer, K.1
-
41
-
-
0025786514
-
The agmR gene, an environmentally responsive gene, complements defective glpR, which encodes the putative activator for glycerol metabolism in Pseudomonas aeruginosa
-
Schweizer HP. 1991. The agmR gene, an environmentally responsive gene, complements defective glpR, which encodes the putative activator for glycerol metabolism in Pseudomonas aeruginosa. J. Bacteriol. 173: 6798-6806.
-
(1991)
J. Bacteriol.
, vol.173
, pp. 6798-6806
-
-
Schweizer, H.P.1
-
43
-
-
28044459818
-
Characterization of temporal protein production in Pseudomonas aeruginosa biofilms
-
Southey-Pillig CJ, Davies DG, Sauer K. 2005. Characterization of temporal protein production in Pseudomonas aeruginosa biofilms. J. Bacteriol. 187: 8114-8126.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 8114-8126
-
-
Southey-Pillig, C.J.1
Davies, D.G.2
Sauer, K.3
-
44
-
-
0030777335
-
Purification and characterization of 2-hydroxybiphenyl 3-monooxygenase, a novel NADH-dependent FAD-containing aromatic hydroxylase from Pseudomonas azelaica HBP1
-
Suske WA, et al. 1997. Purification and characterization of 2-hydroxybiphenyl 3-monooxygenase, a novel NADH-dependent, FAD-containing aromatic hydroxylase from Pseudomonas azelaica HBP1. J. Biol. Chem. 272: 24257-24265.
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 24257-24265
-
-
Suske, W.A.1
-
45
-
-
0035205471
-
The FAD-PAS domain as a sensor for behavioral responses in Escherichia coli
-
Taylor BL, Rebbapragada A, Johnson MS. 2001. The FAD-PAS domain as a sensor for behavioral responses in Escherichia coli. Antioxid. Redox Signal. 3: 867-879.
-
(2001)
Antioxid. Redox Signal.
, vol.3
, pp. 867-879
-
-
Taylor, B.L.1
Rebbapragada, A.2
Johnson, M.S.3
-
46
-
-
0032990441
-
PAS domains: internal sensors of oxygen, redox potential, and light
-
Taylor BL, Zhulin IB. 1999. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63: 479-506.
-
(1999)
Microbiol. Mol. Biol. Rev.
, vol.63
, pp. 479-506
-
-
Taylor, B.L.1
Zhulin, I.B.2
-
47
-
-
13244255243
-
Induction of rapid detachment in Shewanella oneidensis MR-1 biofilms
-
Thormann KM, Saville RM, Shukla S, Spormann AM. 2005. Induction of rapid detachment in Shewanella oneidensis MR-1 biofilms. J. Bacteriol. 187: 1014-1021.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1014-1021
-
-
Thormann, K.M.1
Saville, R.M.2
Shukla, S.3
Spormann, A.M.4
-
48
-
-
33644854244
-
Function of the N-terminal cap of the PAS domain in signaling by the aerotaxis receptor Aer
-
Watts KJ, Sommer K, Fry SL, Johnson MS, Taylor BL. 2006. Function of the N-terminal cap of the PAS domain in signaling by the aerotaxis receptor Aer. J. Bacteriol. 188: 2154-2162.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 2154-2162
-
-
Watts, K.J.1
Sommer, K.2
Fry, S.L.3
Johnson, M.S.4
Taylor, B.L.5
-
49
-
-
76649086069
-
PAS domain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis
-
Xie Z, Ulrich LE, Zhulin IB, Alexandre G. 2010. PAS domain containing chemoreceptor couples dynamic changes in metabolism with chemotaxis. Proc. Natl. Acad. Sci. U. S. A. 107: 2235-2240.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 2235-2240
-
-
Xie, Z.1
Ulrich, L.E.2
Zhulin, I.B.3
Alexandre, G.4
-
50
-
-
0030884102
-
PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox
-
Zhulin IB, Taylor BL, Dixon R. 1997. PAS domain S-boxes in archaea, bacteria and sensors for oxygen and redox. Trends Biochem. Sci. 22: 331-333.
-
(1997)
Trends Biochem. Sci.
, vol.22
, pp. 331-333
-
-
Zhulin, I.B.1
Taylor, B.L.2
Dixon, R.3
|