MetaboLights: Towards a new COSMOS of metabolomics data management

Metabolomics

Volumn 8, Issue 5, 2012, Pages 757-760

  Steinbeck, Christoph ^a   Conesa, Pablo ^a   Haug, Kenneth ^a   Mahendraker, Tejasvi ^a   Williams, Mark ^a   Maguire, Eamonn ^b   Rocca Serra, Philippe ^b   Sansone, Susanna Assunta ^b   Salek, Reza M ^c,d   Griffin, Julian L ^c,d  

^a EUROPEAN BIOINFORMATICS INSTITUTE   (United Kingdom)

^b UNIVERSITY OF OXFORD   (United Kingdom)

^c Elsie Widdowson Laboratory   (United Kingdom)

^d UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Databases; ISA commons; ISA Tab; Metabolomics

Indexed keywords

ARTICLE; COMPUTER PROGRAM; DATA BASE; INFORMATION PROCESSING; INFORMATION SYSTEM; METABOLIGHTS; METABOLOMICS; MOLECULAR BIOLOGY; VALIDITY;

EID: 84867223520     PISSN: 15733882     EISSN: 15733890     Source Type: Journal    
DOI: 10.1007/s11306-012-0462-0     Document Type: Article

References (8)

1. Fiehn, O., Robertson, D., Griffin, J. et al. (2007). The metabolomics standards initiative (MSI). Metabolomics, 3(3), 175-178.
2. Kopka, J., Schauer, N., Krueger, S., Birkemeyer, C., Usadel, B., Bergmuller, E., Dormann, P., Weckwerth, W., Gibon, Y., & Stitt, M. (2005). GMD@ CSB. DB: the Golm metabolome database. Bioinformatics, 21(8), 1635-1638.
3. O'Callaghan, S., DeSouza, D. P., Isaac, A., Wang, Q., Hodkinson, L., Olshansky, M., Erwin, T., Appelbe, B., Tull, D. L., Roessner, U., Bacic, A., McConville, M. J., Likic, V. A. (2012). PyMS: a Python toolkit for processing of gas chromatography-mass spectrometry (GC-MS) data. Application and comparative study of selected tools. BMC Bioinformatics, 13(1), 115.
4. Sansone, S.-A., Rocca-Serra, P., Field, D., et al. (2012). Toward interoperable bioscience data. Nature Genetics, 44(2), 121-126.
5. Skogerson, K., Wohlgemuth, G., Barupal, D. K., & Fiehn, O. (2011). The volatile compound BinBase mass spectral database. BMC Bioinformatics, 12, 321.
6. Smith, C. A., O'Maille, G., Want, E. J., Qin, C., Trauger, S. A., Brandon, T. R., Custodio, D. E., Abagyan, R., Siuzdak, G. (2005). METLIN: A metabolite mass spectral database. Therapeutic Drug Monitoring, 27(6), 747-751.
7. Taylor, C. F., Field, D., Sansone, S.-A. et al. (2008). Promoting coherent minimum reporting guidelines for biological and biomedical investigations: The MIBBI project. Nature Biotechnology, 26(8), 889-896.
8. Wishart, D. S., Tzur, D., Knox, C., Eisner, R., Guo, A. C., Young, N., Cheng, D., Jewell, K., Arndt, D., Sawhney, S., Fung, C., Nikolai, L., Lewis, M., Coutouly, M.-A., Forsythe, I., Tang, P., Shrivastava, S., Jeroncic, K., Stothard, P., Amegbey, G., Block, D., Hau, D. D., Wagner, J., Miniaci, J., Clements, M., Gebremedhin, M., Guo, N., Zhang, Y., Duggan, G. E., Macinnis, G. D., Weljie, A. M., Dowlatabadi, R., Bamforth, F., Clive, D., Greiner, R., Li, L., Marrie, T., Sykes, B. D., Vogel, H. J., Querengesser, L. (2007). HMDB: The human metabolome database. Nucleic Acids Research, 35(Database), D521-D526.