Comparative analysis of water stress-responsive transcriptomes in drought-susceptible and -tolerant wheat (Triticum aestivum L.)

Journal of Plant Biology

Volumn 55, Issue 5, 2012, Pages 349-360

  Li, Yong Chun ^a   Meng, Fan Rong ^a   Zhang, Chun Yan ^a   Zhang, Ning ^a   Sun, Ming Shan ^a   Ren, Jiang Ping ^a   Niu, Hong Bin ^a   Wang, Xiang ^a   Yin, Jun ^a  

^a HENAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Transcriptomes; Water stress; Wheat

Indexed keywords

TRITICUM AESTIVUM;

EID: 84867192774     PISSN: 12269239     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12374-011-0032-4     Document Type: Article

References (33)

1. Ali-Benali MA, Alary R, Joudrier P, Gautier MF (2005) Comparative expression of five Lea genes during wheat seed development and in response to abiotic stresses by real-time quantitative RTPCR. Biochim Biophys Acta 1730: 56-65.
2. Aprile A, Mastrangelo AM, De Leonardis AM, Galiba G, Roncaglia E, Ferrari F, De Bellis L, Turchi L, Giuliano G, Cattivelli L (2009) Transcriptional profiling in response to terminal drought stress reveals differential responses along the wheat genome. BMC Genom 10: 279.
3. Bartels D, Sunkar R (2005) Drought and salt tolerance in plants. Crit Rev Plant Sci 24: 23-58.
4. Brini F, Hanin M, Lumbreras V, Amara I, Khoudi H, Hassairi A, Pages M, Masmoudi K (2007) Overexpression of wheat dehydrin DHN-5 enhances tolerance to salt and osmotic stress in Arabidopsis thaliana. Plant Cell Rep 26: 2017-2026.
5. Chinnusamy V, Schumaker K, Zhu JK (2004) Molecular genetic perspectives on cross-talk and specificity in abiotic stress signalling in plants. J Exp Bot 55: 225-236.
6. Crismani W, Baumann U, Sutton T, Shirley N, Webster T, Spangenberg G, Langridge P, Able JA (2006) Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat. BMC Genom 7: 267.
7. Dure III L, Greenway SC, Galau GA (1981) Developmental biochemistry of cottonseed embryogenesis and germination: changing messenger ribonucleic acid populations as shown by in vitro and in vivo protein synthesis. Biochemistry 20: 4162-4168.
8. Ergen NZ, Thimmapuram J, Bohnert HJ, Budak H (2009) Transcriptome pathways unique to dehydration tolerant relatives of modern wheat. Funct Integr Genom 9: 377-396.
9. Fernandez P, Di Rienzo J, Fernandez L, Hopp HE, Paniego N, Heinz RA (2008) Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis. BMC Plant Biol 8: 11.
10. Hundertmark M, Hincha DK (2008) LEA (late embryogenesis abundant) proteins and their encoding genes in Arabidopsis thaliana. BMC Genom 9: 118.
11. Ingram J, Bartels D (1996) The molecular basis of dehydration tolerance in plants. Annu Rev Plant Physiol Plant Mol Biol 47: 377-403.
12. Jukanti AK, Heidlebaugh NM, Parrott DL, Fischer IA, McInnerney K, Fischer AM (2008) Comparative transcriptome profiling of near-isogenic barley (Hordeum vulgare) lines differing in the allelic state of a major grain protein content locus identifies genes with possible roles in leaf senescence and nitrogen reallocation. New Phytol 177: 333-349.
13. Kovacs D, Agoston B, Tompa P (2008) Disordered plant LEA proteins as molecular chaperones. Plant Signal Behav 3: 710-713.
14. Kreps JA, Wu Y, Chang HS, Zhu T, Wang X, Harper JF (2002) Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress. Plant Physiol 130: 2129-2141.
15. Li M, Xu W, Yang W, Kong Z, Xue Y (2007) Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice. Plant Physiol 144: 1797-1812.
16. Mohammadi M, Kav NN, Deyholos MK (2008) Transcript expression profile of water-limited roots of hexaploid wheat (Triticum aestivum 'Opata'). Genome 51: 357-367.
17. Oztur ZN, Talame V, Deyholos M, Michalowski CB, Galbraith DW, Gozukirmizi N, Tuberosa R, Bohnert HJ (2002) Monitoring large-scale changes in transcript abundance in drought- and saltstressed barley. Plant Mol Biol 48: 551-573.
18. Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol 133: 1755-1767.
19. Rajeevan MS, Ranamukhaarachchi DG, Vernon SD, Unger ER (2001) Use of real-time quantitative PCR to validate the results of cDNA array and differential display PCR technologies. Methods 25: 443-451.
20. Rampino P, Pataleo S, Gerardi C, Mita G, Perrotta C (2006) Drought stress response in wheat: physiological and molecular analysis of resistant and sensitive genotypes. Plant Cell Environ 29: 2143-2152.
21. Seki M, Narusaka M, Ishida J, Nanjo T, Fujita M, Oono Y, Kamiya A, Nakajima M, Enju A, Sakurai T, Satou M, Akiyama K, Taji T, Yamaguchi-Shinozaki K, Carninci P, Kawai J, Hayashizaki Y, Shinozaki K (2002) Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray. Plant J 31: 279-292.
22. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58: 221-227.
23. Shinozaki K, Yamaguchi-Shinozaki K, Seki M (2003) Regulatory network of gene expression in the drought and cold stress responses. Curr Opin Plant Biol 6: 410-417.
24. Umezawa T, Fujita M, Fujita Y, Yamaguchi-Shinozaki K, Shinozaki K (2006) Engineering drought tolerance in plants: discovering and tailoring genes to unlock the future. Curr Opin Biotechnol 17: 113-122.
25. Valluru R, van den Ende W (2008) Plant fructans in stress environments: emerging concepts and future prospects. J Exp Bot 59: 2905-2916.
26. van den Ende W, De Coninck B, van Laere A (2004) Plant fructan exohydrolases: a role in signaling and defense? Trends Plant Sci 9: 523-528.
27. Wang H, Zhang H, Gao F, Li J, Li Z (2007) Comparison of gene expression between upland and lowland rice cultivars under water stress using cDNA microarray. Theor Appl Genet 115: 1109-1126.
28. Wise MJ, Tunnacliffe A (2004) POPP the question: what do LEA proteins do? Trends Plant Sci 9: 13-17.
29. Xiong L, Schumaker KS, Zhu JK (2002) Cell signaling during cold, drought, and salt stress. Plant Cell 14Suppl: S165-183.
30. Zheng J, Zhao J, Tao Y, Wang J, Liu Y, Fu J, Jin Y, Gao P, Zhang J, Bai Y, Wang G (2004) Isolation and analysis of water stress induced genes in maize seedlings by subtractive PCR and cDNA macroarray. Plant Mol Biol 55: 807-823.
31. Zheng Q, Wang XJ (2008) GOEAST: a web-based software toolkit for Gene Ontology enrichment analysis. Nucleic Acids Res. 36(Web Server issue): W358-363.
32. Zhou J, Wang X, Jiao Y, Qin Y, Liu X, He K, Chen C, Ma L, Wang J, Xiong L, Zhang Q, Fan L, Deng XW (2007) Global genome expression analysis of rice in response to drought and highsalinity stresses in shoot, flag leaf, and panicle. Plant Mol Biol 63: 591-608.
33. Zhu JK (2002) Salt and drought stress signal transduction in plants. Annu Rev Plant Biol 53: 247-273.