Phytophthora borealis and Phytophthora riparia, new species in Phytophthora ITS Clade 6

Mycologia

Volumn 104, Issue 5, 2012, Pages 1133-1142

  Hansen, Everett M ^a   Reeser, Paul W ^a   Sutton, Wendy ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

Tubulin; Aquatic fungi; cytochrome oxidase; Forest streams

Indexed keywords

FUNGAL DNA; RIBOSOME DNA;

CLADISTICS; ENZYME ACTIVITY; FUNGUS; GEOGRAPHICAL DISTRIBUTION; GROWTH FORM; MOLECULAR ANALYSIS; MORPHOLOGY; NEW SPECIES; STREAMWATER; TEMPERATURE EFFECT;

ARTICLE; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASE; TREE; ULTRASTRUCTURE; UNITED STATES;

ALASKA; CALIFORNIA; DNA, FUNGAL; DNA, RIBOSOMAL; OREGON; PHYLOGENY; PHYTOPHTHORA; PLANT DISEASES; SEQUENCE ANALYSIS, DNA; TREES;

ALASKA; CALIFORNIA; OREGON; UNITED STATES;

FUNGI; PHYTOPHTHORA; PHYTOPHTHORA GONAPODYIDES;

EID: 84867173480     PISSN: 00275514     EISSN: 15572536     Source Type: Journal    
DOI: 10.3852/11-349     Document Type: Article

References (17)

1. Blair JE, Coffey MD, Park S-Y, Geise DM, Kang S. 2008. A multilocus phylogeny for Phytophthora utilizing markers derived from complete genome sequences. Fungal Genet Biol 45:266-77.
2. Brasier CM. 1969. The effect of light and temperature on reproduction in vitro of two tropical species of Phytophthora. Trans Br Mycol Soc 52:105-113.
3. Brasier CM, Cooke DEL, Duncan JM, Hansen EM. 2003. Multiple new phenotypic taxa from trees and riparian ecosystems in Phytophthora gonapodyides-Phytophthora megasperma ITS Clade 6 which tend to be high temperature tolerant and either inbreeding or sterile. Mycol Res 107:277-290.
4. Brasier CM, Hamm PB, Hansen EM. 1993. Cultural characters, protein patterns and unusual mating behavior of Phytophthora gonapodyides isolates from Britain and North America. Mycol Res 97:1287-1298.
5. Cooke DEL, Drenth A, Duncan JM, Wagels G, Brasier CM. 2000. A molecular phylogeny of Phytophthora and related oomycetes. Fungal Genet Biol 30:17-32.
6. Fulbright DW, Jacobs J, Stadt S, Catal M, Vettraino AM, Vannini A. 2006. Phytophthora root rot of Abies and Pinus in Michigan. In: Brasier C, Jung T, Osswald W, eds. Progress in research on Phytophthora diseases of forest trees. Farnham, Surrey, UK: Forest Research. p 155-156
7. Gelman A, Rubin D. 1992. Inference from iterative simulation using multiple sequences. Stat Sci 7:457-472.
8. Hansen E. 2007. Alien forest pathogens: Phytophthora species are changing world forests. Boreal Environ Res 13:33-41.
9. Hansen E. Hamm PB, Hennon P, Shaw III CG. 1988. Phytophthora drechsleri from remote areas of southeast Alaska. Trans Br Mycol Soc 91:379-384.
10. Huelsenbeck JP, Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17:754-755.
11. Jung T, Stukely MJC, Hardy GEStJ, White D, Paap T, Dunstan WA, Burgess TI. 2011. Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications. Persoonia 26:13-39.
12. Kroon LPNM, Bakker FT, van den Bosch GBM, Bonants PJM, Flier WG. 2004. Phylogenetic analysis of Phytophthora species based on mitochondrial and nuclear DNA sequences. Fungal Genet Biol 41:766-82.
13. Martin FA, Tooley PW. 2003. Phylogenetic relationships among Phytophthora species inferred from sequence analysis of mitochondrially encoded cytochrome oxidase I and II genes. Mycologia 95:269-284.
14. Page RDM. 1996. TreeVIEW: An application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358.
15. Reeser PW, Hansen EM, Sutton W, Remigi P, Adams GC. 2011. Phytophthora species in forest streams in Oregon and Alaska. Mycologia 103:22-35.
16. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25: 4876-4882.
17. White TJ, Bruns T, Lee S, Taylor J. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego, California: Academic Press. p 315-322.