An indel polymorphism in the hybrid incompatibility gene lethal hybrid rescue of Drosophila is functionally relevant

Genetics

Volumn 192, Issue 2, 2012, Pages 683-691

  Maheshwari, Shamoni ^a   Barbash, Daniel A ^a  

^a Cornell University ^*  (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; DROSOPHILA; GENE EXPRESSION; GENE MUTATION; GENE SEQUENCE; HYBRID; NONHUMAN; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM;

ANIMALS; BIOLOGICAL EVOLUTION; CHIMERA; CROSSES, GENETIC; DROSOPHILA; DROSOPHILA PROTEINS; GENES, LETHAL; INDEL MUTATION; POLYMORPHISM, GENETIC; SELECTION, GENETIC;

DROSOPHILA MELANOGASTER; DROSOPHILA SIMULANS;

EID: 84867167250     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.112.141952     Document Type: Article

References (30)

1. Barbash, D. A., 2010 Genetic testing of the hypothesis that hybrid male lethality results from a failure in dosage compensation. Genetics 184: 313-316.
2. Bayes, J. J., and H. S. Malik, 2009 Altered heterochromatin binding by a hybrid sterility protein in Drosophila sibling species. Science 326: 1538-1541.
3. Bischof, J., R. K. Maeda, M. Hediger, F. Karch, and K. Basler, 2007 An optimized transgenesis system for Drosophila using germ-line-specific phiC31 integrases. Proc. Natl. Acad. Sci. USA 104: 3312-3317.
4. Brideau, N. J., and D. A. Barbash, 2011 Functional conservation of the Drosophila hybrid incompatibility gene Lhr. BMC Evol. Biol. 11: 57.
5. Brideau, N. J., H. A. Flores, J. Wang, S. Maheshwari, X. Wang et al., 2006 Two Dobzhansky-Muller genes interact to cause hybrid lethality in Drosophila. Science 314: 1292-1295.
6. Chou, J.-Y., Y.-S. Hung, K.-H. Lin, H.-Y. Lee, and J.-Y. Leu, 2010 Multiple molecular mechanisms cause reproductive isolation between three yeast species. PLoS Biol. 8: e1000432.
7. Greil, F., E. de Wit, H. J. Bussemaker, and B. van Steensel, 2007 HP1 controls genomic targeting of four novel heterochromatin proteins in Drosophila. EMBO J. 26: 741-751.
8. Heck, J. A., J. L. Argueso, Z. Gemici, R. G. Reeves, A. Bernard et al., 2006 Negative epistasis between natural variants of the Saccharomyces cerevisiae MLH1 and PMS1 genes results in a defect in mismatch repair. Proc. Natl. Acad. Sci. USA 103: 3256-3261.
9. Hormozdiari, F., R. Salari, M. Hsing, A. Schönhuth, S. K. Chan et al., 2009 The effect of insertions and deletions on wirings in protein-protein interaction networks: a large-scale study. J. Comput. Biol. 16: 159-167.
10. Hutter, P., and M. Ashburner, 1987 Genetic rescue of inviable hybrids between Drosophila melanogaster and its sibling species. Nature 327: 331-333.
11. Lachaise, D., J. R. David, F. Lemeunier, L. Tsacas, and M. Ashburner, 1986 The reproductive relationships of Drosophila sechellia with D. mauritiana, D. simulans, and D. melanogaster from the Afrotropical region. Evolution 40: 262-271.
12. Lee, H.-Y., J.-Y. Chou, L. Cheong, N.-H. Chang, S.-Y. Yang et al., 2008 Incompatibility of nuclear and mitochondrial genomes causes hybrid sterility between two yeast species. Cell 135: 1065-1073.
13. Mackay, T. F. C., S. Richards, E. A. Stone, A. Barbadilla, J. F. Ayroles et al., 2012 The Drosophila melanogaster Genetic Reference Panel. Nature 482: 173-178.
14. Maheshwari, S., and D. A. Barbash, 2011 The genetics of hybrid incompatibilities. Annu. Rev. Genet. 45: 331-355.
15. Maheshwari, S., and D. A. Barbash, 2012 Cis-by-Trans regulatory divergence causes the asymmetric lethal effects of an ancestral hybrid incompatibility gene. PLoS Genet. 8: e1002597.
16. Maheshwari, S., J. Wang, and D. A. Barbash, 2008 Recurrent positive selection of the Drosophila hybrid incompatibility gene Hmr. Mol. Biol. Evol. 25: 2421-2430.
17. McQuilton, P., S. E. St Pierre, and J. Thurmond; and FlyBase Consortium, 2012 FlyBase 101-the basics of navigating FlyBase. Nucleic Acids Res. 40: D706-D714.
18. Mills, R. E., W. S. Pittard, J. M. Mullaney, U. Farooq, T. H. Creasy et al., 2011 Natural genetic variation caused by small insertions and deletions in the human genome. Genome Res. 21: 830-839.
19. Nolte, V., D. Weigel, and C. Schlötterer, 2008 The impact of shared ancestral variation on hybrid male lethality-a 16 codon indel in the Drosophila simulans Lhr gene. J. Evol. Biol. 21: 551-555.
20. Oliver, P. L., L. Goodstadt, J. J. Bayes, Z. Birtle, K. C. Roach et al., 2009 Accelerated evolution of the Prdm9 speciation gene across diverse metazoan taxa. PLoS Genet. 5: e1000753.
21. Podlaha, O., and J. Zhang, 2003 Positive selection on proteinlength in the evolution of a primate sperm ion channel. Proc. Natl. Acad. Sci. USA 100: 12241-12246.
22. Podlaha, O., D. M. Webb, P. K. Tucker, and J. Zhang, 2005 Positive selection for indel substitutions in the rodent sperm protein catsper1. Mol. Biol. Evol. 22: 1845-1852.
23. Presgraves, D. C., 2007 Does genetic conflict drive rapid molecular evolution of nuclear transport genes in Drosophila? Bioessays 29: 386-391.
24. Presgraves, D. C., 2010 The molecular evolutionary basis of species formation. Nat. Rev. Genet. 11: 175-180.
25. Sturtevant, A. H., 1920 Genetic studies on Drosophila simulans. I. Introduction. Hybrids with Drosophila melanogaster. Genetics 5: 488-500.
26. Tamura, K., D. Peterson, N. Peterson, G. Stecher, M. Nei et al., 2011 MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28: 2731-2739.
27. Ting, C. T., S. C. Tsaur, M. L. Wu, and C. I. Wu, 1998 A rapidly evolving homeobox at the site of a hybrid sterility gene. Science 282: 1501-1504.
28. Wang, E. T., R. Sandberg, S. Luo, I. Khrebtukova, L. Zhang et al., 2008 Alternative isoform regulation in human tissue transcriptomes. Nature 456: 470-476.
29. Watanabe, T. K., 1979 A gene that rescues the lethal hybrids between Drosophila melanogaster and D. simulans. Jpn. J. Genet. 54: 325-331.
30. Zhang, Z., J. Huang, Z. Wang, L. Wang, and P. Gao, 2011 Impact of indels on the flanking regions in structural domains. Mol. Biol. Evol. 28: 291-301.