-
1
-
-
2342485506
-
MiRNAs on the move: miRNA biogenesis and the RNAi machinery
-
Murchison E P, Hannon G J. MiRNAs on the move: miRNA biogenesis and the RNAi machinery. Curr Opin Cell Biol, 2004, 16: 223-229.
-
(2004)
Curr Opin Cell Biol
, vol.16
, pp. 223-229
-
-
Murchison, E.P.1
Hannon, G.J.2
-
2
-
-
0027751663
-
The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14
-
Lee R C, Feinbaum R L, Ambros V. The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14. Cell, 1993, 75: 843-854.
-
(1993)
Cell
, vol.75
, pp. 843-854
-
-
Lee, R.C.1
Feinbaum, R.L.2
Ambros, V.3
-
3
-
-
0035955374
-
Identification of novel genes coding for small expressed RNAs
-
Lagos-Quintana M, Rauhut R, Lendeckel W, et al. Identification of novel genes coding for small expressed RNAs. Science, 2001, 294: 853-858.
-
(2001)
Science
, vol.294
, pp. 853-858
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Lendeckel, W.3
-
4
-
-
77952123785
-
Functional siRNAs and miRNAs exhibit strand bias
-
Khvorova A, Reynolds A, Jayasena S D. Functional siRNAs and miRNAs exhibit strand bias. Cell, 2007, 131: 41-49.
-
(2007)
Cell
, vol.131
, pp. 41-49
-
-
Khvorova, A.1
Reynolds, A.2
Jayasena, S.D.3
-
5
-
-
0038299558
-
Role of microRNAs in plant and animal development
-
Carrington J C, Ambros V. Role of microRNAs in plant and animal development. Science, 2003, 301: 336-338.
-
(2003)
Science
, vol.301
, pp. 336-338
-
-
Carrington, J.C.1
Ambros, V.2
-
6
-
-
34250818778
-
Identification of cotton microRNAs and their targets
-
Zhang B H, Wang Q L, Wang K B, et al. Identification of cotton microRNAs and their targets. Gene, 2007, 397: 26-37.
-
(2007)
Gene
, vol.397
, pp. 26-37
-
-
Zhang, B.H.1
Wang, Q.L.2
Wang, K.B.3
-
8
-
-
29144527030
-
Plant microRNA: a small regulatory molecule with big impact
-
Zhang B H, Pan X P, Cobb G P, et al. Plant microRNA: a small regulatory molecule with big impact. Dev Biol, 2006, 289: 3-16.
-
(2006)
Dev Biol
, vol.289
, pp. 3-16
-
-
Zhang, B.H.1
Pan, X.P.2
Cobb, G.P.3
-
9
-
-
2942672580
-
Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
-
Jones-Rhoades M W, Bartel D P. Computational identification of plant microRNAs and their targets, including a stress-induced miRNA. Mol Cell, 2004, 14: 787-799.
-
(2004)
Mol Cell
, vol.14
, pp. 787-799
-
-
Jones-Rhoades, M.W.1
Bartel, D.P.2
-
11
-
-
38849151740
-
Putative promoter regions of miRNA genes involved in evolutionarily conserved regulatory systems among vertebrates
-
Fujita S, Iba H. Putative promoter regions of miRNA genes involved in evolutionarily conserved regulatory systems among vertebrates. Bioinformatics, 2008, 24: 303-308.
-
(2008)
Bioinformatics
, vol.24
, pp. 303-308
-
-
Fujita, S.1
Iba, H.2
-
12
-
-
67650099755
-
On the taxonomic position of Panicum aristellum (Poaceae: Panicoideae: Paniceae)
-
Zuloaga F O, Giussani L M, Morrone O. On the taxonomic position of Panicum aristellum (Poaceae: Panicoideae: Paniceae). Syst Bot, 2006, 31: 497-505.
-
(2006)
Syst Bot
, vol.31
, pp. 497-505
-
-
Zuloaga, F.O.1
Giussani, L.M.2
Morrone, O.3
-
13
-
-
65649111359
-
Nutritive value of guinea grass (Panicum maximum Jacq.) and urea supplemented rice straw for cattle
-
Peiris H, Ibrahim M N M. Nutritive value of guinea grass (Panicum maximum Jacq.) and urea supplemented rice straw for cattle. Asian Austral J Anim Sciences, 1995, 8: 83-88.
-
(1995)
Asian Austral J Anim Sciences
, vol.8
, pp. 83-88
-
-
Peiris, H.1
Ibrahim, M.N.M.2
-
14
-
-
0035984059
-
Endogenous and silencing-associated small RNAs in plants
-
Llave C, Kasschau K D, Rector M A, et al. Endogenous and silencing-associated small RNAs in plants. Plant Cell, 2002, 14: 1605-1619.
-
(2002)
Plant Cell
, vol.14
, pp. 1605-1619
-
-
Llave, C.1
Kasschau, K.D.2
Rector, M.A.3
-
15
-
-
0038054470
-
Computational and experimental identification of C. elegans microRNAs
-
Grad Y, Aach J, Hayes G D, et al. Computational and experimental identification of C. elegans microRNAs. Mol Cell, 2003, 11: 1253-1263.
-
(2003)
Mol Cell
, vol.11
, pp. 1253-1263
-
-
Grad, Y.1
Aach, J.2
Hayes, G.D.3
-
16
-
-
0035955361
-
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
-
Lau N C, Lim L P, Weinstein E G, et al. An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans. Science, 2001, 294: 858-862.
-
(2001)
Science
, vol.294
, pp. 858-862
-
-
Lau, N.C.1
Lim, L.P.2
Weinstein, E.G.3
-
17
-
-
0035955366
-
An extensive class of small RNAs in Caenorhabditis elegans
-
Lee R C, Ambros V. An extensive class of small RNAs in Caenorhabditis elegans. Science, 2001, 294: 862-864.
-
(2001)
Science
, vol.294
, pp. 862-864
-
-
Lee, R.C.1
Ambros, V.2
-
18
-
-
0037087780
-
miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs
-
Mourelatos Z, Dostie J, Paushkin S, et al. miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. Gene Dev, 2002, 16: 720-728.
-
(2002)
Gene Dev
, vol.16
, pp. 720-728
-
-
Mourelatos, Z.1
Dostie, J.2
Paushkin, S.3
-
19
-
-
0037015239
-
CARPEL factory, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana
-
Park W, Li J J, Song R T, et al. CARPEL factory, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana. Curr Biol, 2002, 12: 1484-1495.
-
(2002)
Curr Biol
, vol.12
, pp. 1484-1495
-
-
Park, W.1
Li, J.J.2
Song, R.T.3
-
20
-
-
0036645146
-
MicroRNAs in plants
-
Reinhart B J, Weinstein E G, Rhoades M W, et al. MicroRNAs in plants. Gene Dev, 2002, 16: 1616-1626.
-
(2002)
Gene Dev
, vol.16
, pp. 1616-1626
-
-
Reinhart, B.J.1
Weinstein, E.G.2
Rhoades, M.W.3
-
21
-
-
33747126827
-
Computational identification of microRNAs and their targets
-
Yoon S, De Micheli G. Computational identification of microRNAs and their targets. Birth Defects Res, 2006, 78: 118-128.
-
(2006)
Birth Defects Res
, vol.78
, pp. 118-128
-
-
Yoon, S.1
de Micheli, G.2
-
22
-
-
12744262431
-
Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
-
Wang X J, Reyes J L, Chua N H, et al. Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets. Genome Biol, 2004, 5: R65.
-
(2004)
Genome Biol
, vol.5
-
-
Wang, X.J.1
Reyes, J.L.2
Chua, N.H.3
-
23
-
-
12744261466
-
Computational prediction of miRNAs in Arabidopsis thaliana
-
Adai A, Johnson C, Mlotshwa S, et al. Computational prediction of miRNAs in Arabidopsis thaliana. Genome Res, 2005, 15: 78-91.
-
(2005)
Genome Res
, vol.15
, pp. 78-91
-
-
Adai, A.1
Johnson, C.2
Mlotshwa, S.3
-
24
-
-
27844495281
-
Identification and characterization of new plant microRNAs using EST analysis
-
Zhang B H, Pan X P, Wang Q L, et al. Identification and characterization of new plant microRNAs using EST analysis. Cell Res, 2005, 15: 336-360.
-
(2005)
Cell Res
, vol.15
, pp. 336-360
-
-
Zhang, B.H.1
Pan, X.P.2
Wang, Q.L.3
-
25
-
-
0038825783
-
Computational identification of Drosophila microRNA genes
-
Lai E C, Tomancak P, Williams R W, et al. Computational identification of Drosophila microRNA genes. Genome Biol, 2003, 4: R42.
-
(2003)
Genome Biol
, vol.4
-
-
Lai, E.C.1
Tomancak, P.2
Williams, R.W.3
-
26
-
-
43149096961
-
In silico identification of conserved microRNAs in large number of diverse plant species
-
Sunkar R, Jagadeeswaran G. In silico identification of conserved microRNAs in large number of diverse plant species. BMC Plant Biol, 2008, 8: 37.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 37
-
-
Sunkar, R.1
Jagadeeswaran, G.2
-
27
-
-
77957141040
-
An EST-SSR marker linked with yellow rust resistance in wheat
-
Altinkut-Uncuoglu A, Ercan S, Ertugrul F, et al. An EST-SSR marker linked with yellow rust resistance in wheat. Biol Plantarum, 2010, 54: 691-696.
-
(2010)
Biol Plantarum
, vol.54
, pp. 691-696
-
-
Altinkut-Uncuoglu, A.1
Ercan, S.2
Ertugrul, F.3
-
28
-
-
79955538305
-
Genetic diversity of Eucalyptus hybrids estimated by genomic and EST microsatellite markers
-
Cupertino F B, Leal J B, Correa R X, et al. Genetic diversity of Eucalyptus hybrids estimated by genomic and EST microsatellite markers. Biol Plantarum, 2011, 55: 379-382.
-
(2011)
Biol Plantarum
, vol.55
, pp. 379-382
-
-
Cupertino, F.B.1
Leal, J.B.2
Correa, R.X.3
-
29
-
-
79960644250
-
Construction and characterization of a cDNA library from floral organs and fruitlets of Citrus reticulata
-
Zheng T G, Qiu W M, Fan G E, et al. Construction and characterization of a cDNA library from floral organs and fruitlets of Citrus reticulata. Biol Plantarum, 2011, 55: 431-436.
-
(2011)
Biol Plantarum
, vol.55
, pp. 431-436
-
-
Zheng, T.G.1
Qiu, W.M.2
Fan, G.E.3
-
30
-
-
1542297345
-
Computational identification of microRNA targets
-
Rajewsky N, Socci N D. Computational identification of microRNA targets. Dev Biol, 2004, 267: 529-535.
-
(2004)
Dev Biol
, vol.267
, pp. 529-535
-
-
Rajewsky, N.1
Socci, N.D.2
-
32
-
-
0025183708
-
Basic local alignment search tool
-
Altschul S F, Gish W, Miller W, et al. Basic local alignment search tool. J Mol Biol, 1990, 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
-
33
-
-
33646830110
-
Conservation and divergence of plant microRNA genes
-
Zhang B, Pan X, Cannon C H, et al. Conservation and divergence of plant microRNA genes. Plant J, 2006, 46: 243-259.
-
(2006)
Plant J
, vol.46
, pp. 243-259
-
-
Zhang, B.1
Pan, X.2
Cannon, C.H.3
-
34
-
-
32144438833
-
Identification of plant microRNA homologs
-
Dezulian T, Remmert M, Palatnik J F, et al. Identification of plant microRNA homologs. Bioinformatics, 2006, 22: 359-360.
-
(2006)
Bioinformatics
, vol.22
, pp. 359-360
-
-
Dezulian, T.1
Remmert, M.2
Palatnik, J.F.3
-
35
-
-
48249126207
-
Reconstituting plant miRNA biogenesis
-
Zhu J K. Reconstituting plant miRNA biogenesis. Proc Natl Acad Sci USA, 2008, 105: 9851-9852.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 9851-9852
-
-
Zhu, J.K.1
-
36
-
-
32544440797
-
RNAshapes: an integrated RNA analysis package based on abstract shapes
-
Steffen P, Voss B, Rehmsmeier M, et al. RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinformatics, 2006, 22: 500-503.
-
(2006)
Bioinformatics
, vol.22
, pp. 500-503
-
-
Steffen, P.1
Voss, B.2
Rehmsmeier, M.3
-
37
-
-
24144497144
-
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction
-
Reeder J, Giegerich R. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. Bioinformatics, 2005, 21: 3516-3523.
-
(2005)
Bioinformatics
, vol.21
, pp. 3516-3523
-
-
Reeder, J.1
Giegerich, R.2
-
39
-
-
30744468557
-
Evidence that miRNAs are different from other RNAs
-
Zhang B H, Pan X P, Cox S B, et al. Evidence that miRNAs are different from other RNAs. Cell Mol Life Sci, 2006, 63: 246-254.
-
(2006)
Cell Mol Life Sci
, vol.63
, pp. 246-254
-
-
Zhang, B.H.1
Pan, X.P.2
Cox, S.B.3
-
40
-
-
79959967431
-
psRNATarget: a plant small RNA target analysis server
-
Dai X B, Zhao P X. psRNATarget: a plant small RNA target analysis server. Nucleic Acids Res, 2011, 39: W155-159.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Dai, X.B.1
Zhao, P.X.2
-
41
-
-
28444449496
-
The microRNA miR-196 acts upstream of Hoxb8 and Shh in limb development
-
Hornstein E, Mansfield J H, Yekta S, et al. The microRNA miR-196 acts upstream of Hoxb8 and Shh in limb development. Nature, 2005, 438: 671-674.
-
(2005)
Nature
, vol.438
, pp. 671-674
-
-
Hornstein, E.1
Mansfield, J.H.2
Yekta, S.3
-
42
-
-
63649104735
-
Analysis of expressed sequence tags in apomictic guineagrass (Panicum maximum)
-
Yamada-Akiyama H, Akiyama Y, Ebina M, et al. Analysis of expressed sequence tags in apomictic guineagrass (Panicum maximum). J Plant Physiol, 2009, 166: 750-761.
-
(2009)
J Plant Physiol
, vol.166
, pp. 750-761
-
-
Yamada-Akiyama, H.1
Akiyama, Y.2
Ebina, M.3
-
43
-
-
58149299281
-
Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the bioinformatic platform Soleamold
-
Cerda J, Mercade J, Lozano J J, et al. Genomic resources for a commercial flatfish, the Senegalese sole (Solea senegalensis): EST sequencing, oligo microarray design, and development of the bioinformatic platform Soleamold. BMC Genomics, 2008, 9: 508.
-
(2008)
BMC Genomics
, vol.9
, pp. 508
-
-
Cerda, J.1
Mercade, J.2
Lozano, J.J.3
-
44
-
-
33845669590
-
Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses
-
Kuster H, Becker A, Firnhaber C, et al. Development of bioinformatic tools to support EST-sequencing, in silico- and microarray-based transcriptome profiling in mycorrhizal symbioses. Phytochemistry, 2007, 68: 19-32.
-
(2007)
Phytochemistry
, vol.68
, pp. 19-32
-
-
Kuster, H.1
Becker, A.2
Firnhaber, C.3
-
45
-
-
0037348716
-
Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database
-
Li L, Brunk B P, Kissinger J C, et al. Gene discovery in the apicomplexa as revealed by EST sequencing and assembly of a comparative gene database. Genome Res, 2003, 13: 443-454.
-
(2003)
Genome Res
, vol.13
, pp. 443-454
-
-
Li, L.1
Brunk, B.P.2
Kissinger, J.C.3
-
46
-
-
0042388218
-
ESTWeb: bioinformatics services for EST sequencing projects
-
Paquola A C, Nishyiama M Y Jr., Reis E M, et al. ESTWeb: bioinformatics services for EST sequencing projects. Bioinformatics, 2003, 19: 1587-1588.
-
(2003)
Bioinformatics
, vol.19
, pp. 1587-1588
-
-
Paquola, A.C.1
Nishyiama Jr., M.Y.2
Reis, E.M.3
-
47
-
-
29244455325
-
Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries
-
Wang J P, Lindsay B G, Cui L, et al. Gene capture prediction and overlap estimation in EST sequencing from one or multiple libraries. BMC Bioinformatics, 2005, 13: 300.
-
(2005)
BMC Bioinformatics
, vol.13
, pp. 300
-
-
Wang, J.P.1
Lindsay, B.G.2
Cui, L.3
-
48
-
-
0037162702
-
Prediction of plant microRNA targets
-
Rhoades M W, Reinhart B J, Lim L P, et al. Prediction of plant microRNA targets. Cell, 2002, 110: 513-520.
-
(2002)
Cell
, vol.110
, pp. 513-520
-
-
Rhoades, M.W.1
Reinhart, B.J.2
Lim, L.P.3
-
49
-
-
0031214215
-
Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transition
-
Cardon G H, Hohmann S, Nettesheim K, et al. Functional analysis of the Arabidopsis thaliana SBP-box gene SPL3: a novel gene involved in the floral transition. Plant J, 1997, 12: 367-737.
-
(1997)
Plant J
, vol.12
, pp. 367-737
-
-
Cardon, G.H.1
Hohmann, S.2
Nettesheim, K.3
-
50
-
-
0344418715
-
Molecular characterisation of the Arabidopsis SBP-box genes
-
Cardon G, Hohmann S, Klein J, et al. Molecular characterisation of the Arabidopsis SBP-box genes. Gene, 1999, 237: 91-104.
-
(1999)
Gene
, vol.237
, pp. 91-104
-
-
Cardon, G.1
Hohmann, S.2
Klein, J.3
-
51
-
-
0032191287
-
Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana
-
Kranz H D, Denekamp M, Greco R, et al. Towards functional characterisation of the members of the R2R3-MYB gene family from Arabidopsis thaliana. Plant J, 1998, 16: 263-276.
-
(1998)
Plant J
, vol.16
, pp. 263-276
-
-
Kranz, H.D.1
Denekamp, M.2
Greco, R.3
-
53
-
-
0034649673
-
Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana
-
Theologis A, Ecker J R, Palm C J, et al. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Nature, 2000, 408: 816-820.
-
(2000)
Nature
, vol.408
, pp. 816-820
-
-
Theologis, A.1
Ecker, J.R.2
Palm, C.J.3
-
54
-
-
0242300620
-
Empirical analysis of transcriptional activity in the Arabidopsis genome
-
Yamada K, Lim J, Dale J M, et al. Empirical analysis of transcriptional activity in the Arabidopsis genome. Science, 2003, 302: 842-846.
-
(2003)
Science
, vol.302
, pp. 842-846
-
-
Yamada, K.1
Lim, J.2
Dale, J.M.3
-
55
-
-
22144498191
-
CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis
-
Green K A, Prigge M J, Katzman R B, et al. CORONA, a member of the class III homeodomain leucine zipper gene family in Arabidopsis, regulates stem cell specification and organogenesis. Plant Cell, 2005, 17: 691-704.
-
(2005)
Plant Cell
, vol.17
, pp. 691-704
-
-
Green, K.A.1
Prigge, M.J.2
Katzman, R.B.3
-
56
-
-
0032585341
-
Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1081958 bp covered by seventeen physically assigned P1 and TAC clones. 1081958 bp covered by seventeen physically assigned P1 and TAC clones
-
Asamizu E, Sato S, Kaneko T, et al. Structural analysis of Arabidopsis thaliana chromosome 5. VIII. Sequence features of the regions of 1081958 bp covered by seventeen physically assigned P1 and TAC clones. 1081958 bp covered by seventeen physically assigned P1 and TAC clones. DNA Res, 1998, 5: 379-391.
-
(1998)
DNA Res
, vol.5
, pp. 379-391
-
-
Asamizu, E.1
Sato, S.2
Kaneko, T.3
-
57
-
-
4043074968
-
Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
-
Sunkar R, Zhu J K. Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis. Plant Cell, 2004, 16: 2001-2019.
-
(2004)
Plant Cell
, vol.16
, pp. 2001-2019
-
-
Sunkar, R.1
Zhu, J.K.2
-
58
-
-
27844526222
-
A miRNA involved in phosphate-starvation response in Arabidopsis
-
Fujii H, Chiou T J, Lin S I, et al. A miRNA involved in phosphate-starvation response in Arabidopsis. Curr Biol, 2005, 15: 2038-2043.
-
(2005)
Curr Biol
, vol.15
, pp. 2038-2043
-
-
Fujii, H.1
Chiou, T.J.2
Lin, S.I.3
-
59
-
-
22144464033
-
Cloning and characterization of microRNAs from rice
-
Sunkar R, Girke T, Jain P K, et al. Cloning and characterization of microRNAs from rice. Plant Cell, 2005, 17: 1397-1411.
-
(2005)
Plant Cell
, vol.17
, pp. 1397-1411
-
-
Sunkar, R.1
Girke, T.2
Jain, P.K.3
-
60
-
-
42149157716
-
Identification of novel and candidate miRNAs in rice by high throughput sequencing
-
Sunkar R, Zhou X, Zheng Y, et al. Identification of novel and candidate miRNAs in rice by high throughput sequencing. BMC Plant Biol, 2008, 8: 25.
-
(2008)
BMC Plant Biol
, vol.8
, pp. 25
-
-
Sunkar, R.1
Zhou, X.2
Zheng, Y.3
|