메뉴 건너뛰기




Volumn 3, Issue 4, 2011, Pages 561-568

Review of integrative analysis challenges in systems biology

Author keywords

Metabolic profiling; Omics platform; Partial least squares discriminant analysis; Principal component analysis; Selection bias; Variable selection

Indexed keywords

ANALYSIS OF VARIANCE; BLOOD CHEMISTRY; DATA PROCESSING; GAS CHROMATOGRAPHY; HUMAN; INTEGRATIVE ANALYSIS; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; NONHUMAN; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PRINCIPAL COMPONENT ANALYSIS; REVIEW; STATISTICAL ANALYSIS; SYSTEMS BIOLOGY; TRANSCRIPTOMICS;

EID: 84867123141     PISSN: None     EISSN: 19466315     Source Type: Journal    
DOI: 10.1198/sbr.2010.09027     Document Type: Review
Times cited : (1)

References (30)
  • 1
    • 0037076322 scopus 로고    scopus 로고
    • Selection Bias in Gene Extraction on the Basis of Microarray Gene-Expression Data
    • 566
    • Ambroise, C., and McLachlan, G.J. (2002), "Selection Bias in Gene Extraction on the Basis of Microarray Gene-Expression Data, " Proceedings of the National Academy of Sciences, 99 (10), 6562-6566. 566
    • (2002) Proceedings of the National Academy of Sciences , vol.99 , Issue.10 , pp. 6562-6566
    • Ambroise, C.1    McLachlan, G.J.2
  • 2
    • 4444272108 scopus 로고    scopus 로고
    • Statistical Experimental Design and Partial Least Squares Regression Analysis of Biofluid Metabonomic NMR and Clinical Chemistry Data for Screening of Adverse Drug Effects
    • 562
    • Antti, H. et al. (2004), "Statistical Experimental Design and Partial Least Squares Regression Analysis of Biofluid Metabonomic NMR and Clinical Chemistry Data for Screening of Adverse Drug Effects, " Chemometrics and Intelligent Laboratory Systems, 73, 139-149. 562
    • (2004) Chemometrics and Intelligent Laboratory Systems , vol.73 , pp. 139-149
    • Antti, H.1
  • 3
    • 0001677717 scopus 로고
    • Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
    • 566
    • Benjamini, Y., and Hochberg, Y. (1995), "Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing, " Journal of the Royal Statistical Society, Ser. B, 57, 289-300. 566
    • (1995) Journal of the Royal Statistical Society, Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0037316303 scopus 로고    scopus 로고
    • A Comparison of Normalization Methods for High Density Oligonucleotide Array Data Based on Variance and Bias
    • 563
    • Bolstad, B.M. et al. (2003), "A Comparison of Normalization Methods for High Density Oligonucleotide Array Data Based on Variance and Bias, " Bioinformatics, 19 (2), 185-193. 563
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1
  • 5
    • 33846515112 scopus 로고    scopus 로고
    • Partial Least Squares: A Versatile Tool for the Analysis of High-Dimensional Genomic Data
    • 565
    • Boulesteix, A.L., and Strimmer, K. (2006), "Partial Least Squares: A Versatile Tool for the Analysis of High-Dimensional Genomic Data, " Briefings in Bioinformatics, 8, 32-44. 565
    • (2006) Briefings in Bioinformatics , vol.8 , pp. 32-44
    • Boulesteix, A.L.1    Strimmer, K.2
  • 6
    • 0035478854 scopus 로고    scopus 로고
    • Random Forests
    • 566, 567
    • Breiman, L. (2001), "Random Forests, " Machine Learning, 45, 5-32. 566, 567
    • (2001) Machine Learning , vol.45 , pp. 5-32
    • Breiman, L.1
  • 7
    • 2142732441 scopus 로고    scopus 로고
    • Large-Scale Simultaneous Hypothesis Testing: The Choice of a Null Hypothesis
    • 566
    • Efron, B. (2004), "Large-Scale Simultaneous Hypothesis Testing: The Choice of a Null Hypothesis, " Journal of American Statistical Association, 99, 96-104. 566
    • (2004) Journal of American Statistical Association , vol.99 , pp. 96-104
    • Efron, B.1
  • 8
    • 33947216221 scopus 로고    scopus 로고
    • Correlation and Large-Scale Simultaneous Significance Testing
    • 566
    • Efron, B. (2007), "Correlation and Large-Scale Simultaneous Significance Testing, " Journal ofthe American Statistical Association, 102, 93-103. 566
    • (2007) Journal ofthe American Statistical Association , vol.102 , pp. 93-103
    • Efron, B.1
  • 9
    • 35348890683 scopus 로고    scopus 로고
    • On Testing the Significance of Sets of Genes
    • 566
    • Efron, B., and Tibshirani, R. (2007), "On Testing the Significance of Sets of Genes, " Annals of Applied Statistics, 1, 107-129. 566
    • (2007) Annals of Applied Statistics , vol.1 , pp. 107-129
    • Efron, B.1    Tibshirani, R.2
  • 12
    • 9944247186 scopus 로고    scopus 로고
    • Using Chemometrics for Navigating in the Large Data Sets of Genomics, Proteomics, and Metabonomics (gpm)
    • 562
    • Eriksson, L. et al. (2004), "Using Chemometrics for Navigating in the Large Data Sets of Genomics, Proteomics, and Metabonomics (gpm), " Analytical andBioanalytical Chemistry, 380, 419-429. 562
    • (2004) Analytical andBioanalytical Chemistry , vol.380 , pp. 419-429
    • Eriksson, L.1
  • 15
    • 0036161259 scopus 로고    scopus 로고
    • Gene Selection for Cancer Classification Using Support Vector Machines
    • 566
    • Guyon, I. et al. (2002), "Gene Selection for Cancer Classification Using Support Vector Machines, " Machine Learning, 46, 389-422. 566
    • (2002) Machine Learning , vol.46 , pp. 389-422
    • Guyon, I.1
  • 17
    • 0025811052 scopus 로고
    • Minimum Analogue Peptide Sets (MAPS) for Quantitative Structure-Activity Relationships
    • 565
    • Hellberg, S. et al. (1991), "Minimum Analogue Peptide Sets (MAPS) for Quantitative Structure-Activity Relationships, " International Journal of Peptide and Protein Research, 37 (5), 414-424. 565
    • (1991) International Journal of Peptide and Protein Research , vol.37 , Issue.5 , pp. 414-424
    • Hellberg, S.1
  • 18
    • 0022636036 scopus 로고
    • The Prediction of Bradykinin Potentiating Potency of Pentapeptides. An Example of a Peptide Quantitative Structure-Activity Relationship
    • 565
    • Hellberg, S., Sjostrom, M., and Wold, S. (1986), "The Prediction of Bradykinin Potentiating Potency of Pentapeptides. An Example of a Peptide Quantitative Structure-Activity Relationship, " Acta Chemica Scandinavica, B 40 (2), 135-140. 565
    • (1986) Acta Chemica Scandinavica, B , vol.40 , Issue.2 , pp. 135-140
    • Hellberg, S.1    Sjostrom, M.2    Wold, S.3
  • 19
    • 28444475160 scopus 로고    scopus 로고
    • A Data Integration Methodology for Systems Biology
    • 562
    • Hwang, D. et al. (2005), "A Data Integration Methodology for Systems Biology, " Proceedings of the National Academy of Sciences, 102 (48), 17296-17301. 562
    • (2005) Proceedings of the National Academy of Sciences , vol.102 , Issue.48 , pp. 17296-17301
    • Hwang, D.1
  • 20
    • 17844394177 scopus 로고    scopus 로고
    • Statistical and Computational Methods for Comparative Proteomic Profiling using Liquid Chromatography-Tandem Mass Spectrometry
    • 563
    • Listgarten, J., and Emili, A. (2005), "Statistical and Computational Methods for Comparative Proteomic Profiling using Liquid Chromatography-Tandem Mass Spectrometry, " Molecular Cell Proteomics, 4 (4), 419-434. 563
    • (2005) Molecular Cell Proteomics , vol.4 , Issue.4 , pp. 419-434
    • Listgarten, J.1    Emili, A.2
  • 23
    • 84863811822 scopus 로고    scopus 로고
    • Tools for Statistical Analysis with Missing Data: Application to a Large Medical Database
    • eds. R. Engelbrecht et al., ENMI, in, 564
    • Preda, C., Duhamel, A., Picavet, M., and Kechadi, T. (2005), "Tools for Statistical Analysis with Missing Data: Application to a Large Medical Database, in Connecting Medical Informatics and BioInformatics, eds. R. Engelbrecht et al., ENMI, pp 181-186. 564
    • (2005) Connecting Medical Informatics and BioInformatics , pp. 181-186
    • Preda, C.1    Duhamel, A.2    Picavet, M.3    Kechadi, T.4
  • 24
    • 0037245343 scopus 로고    scopus 로고
    • Pitfalls in the Use of DNA Microarray Data for Diagnostic and Prognostic Classification
    • 566
    • Simon, R., et al. (2003), "Pitfalls in the Use of DNA Microarray Data for Diagnostic and Prognostic Classification, " Journal of the National Cancer Institute, 95 (1), 14-18. 566
    • (2003) Journal of the National Cancer Institute , vol.95 , Issue.1 , pp. 14-18
    • Simon, R.1
  • 25
    • 0345548657 scopus 로고    scopus 로고
    • Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling
    • 566, 567
    • Svetnik, V., et al. (2003), "Random Forest: A Classification and Regression Tool for Compound Classification and QSAR Modeling, " Journal of Chemical Information and Computer Sciences, 43, 1947-1958. 566, 567
    • (2003) Journal of Chemical Information and Computer Sciences , vol.43 , pp. 1947-1958
    • Svetnik, V.1
  • 26
    • 30744463069 scopus 로고    scopus 로고
    • Integration of Genomic and Metabonomic Data in Systems Biology-Are We 'there' Yet?
    • 562
    • Thomas, C.E., and Ganji, G. (2006), "Integration of Genomic and Metabonomic Data in Systems Biology-Are We 'there' Yet? Current Opinion in Drug Discovery and Development, 9 (1), 92-100. 562
    • (2006) Current Opinion in Drug Discovery and Development , vol.9 , Issue.1 , pp. 92-100
    • Thomas, C.E.1    Ganji, G.2
  • 27
    • 0037076272 scopus 로고    scopus 로고
    • Diagnosis of Multiple Cancer Types by Shrunken Centroids of Gene Expression
    • 567
    • Tibshirani, R. et al. (2002), "Diagnosis of Multiple Cancer Types by Shrunken Centroids of Gene Expression, " Proceedings of the National Academy of Sciences, 99 (10), 6567-6572. 567
    • (2002) Proceedings of the National Academy of Sciences , vol.99 , Issue.10 , pp. 6567-6572
    • Tibshirani, R.1
  • 28
    • 31144438390 scopus 로고    scopus 로고
    • Innovation: Rescuing Drug Discovery: In Vivo Systems Pathology and Systems Pharmacology
    • 561
    • van der Greef, J., and McBurney, R.N. (2005), "Innovation: Rescuing Drug Discovery: In Vivo Systems Pathology and Systems Pharmacology, " National Reviews Drug Discovery, 4 (12), 961-967. 561
    • (2005) National Reviews Drug Discovery , vol.4 , Issue.12 , pp. 961-967
    • van der Greef, J.1    McBurney, R.N.2
  • 30
    • 16244401458 scopus 로고    scopus 로고
    • Regularization and Variable Selection via the Elastic Net
    • 565
    • Zou, H., and Hastie, T. (2005), "Regularization and Variable Selection via the Elastic Net, " Journal ofthe Royal Statistical Society, Ser. B, 67, 301-320. 565
    • (2005) Journal ofthe Royal Statistical Society, Ser. B , vol.67 , pp. 301-320
    • Zou, H.1    Hastie, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.