Stem transcriptome reveals mechanisms to reduce the energetic cost of shade-avoidance responses in tomato

Plant Physiology

Volumn 160, Issue 2, 2012, Pages 1110-1119

  Cagnola, Juan Ignacio ^a   Ploschuk, Edmundo ^a   Benech Arnold, Tomás ^a   Finlayson, Scott A ^c   Casal, Jorge José ^a,b  

^a UNIVERSIDAD DE BUENOS AIRES   (Argentina)

^b FUNDACIÓN INSTITUTO LELOIR   (Argentina)

^c TEXAS A AND M UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

LYCOPERSICON ESCULENTUM;

EID: 84867121923     PISSN: 00320889     EISSN: 15322548     Source Type: Journal    
DOI: 10.1104/pp.112.201921     Document Type: Article

References (45)

1. Aukerman MJ, Hirschfeld M, Wester L, Weaver M, Clack T, Amasino RM, Sharrock RA (1997) A deletion in the PHYD gene of the Arabidopsis Wassilewskija ecotype defines a role for phytochrome D in red/far-red light sensing. Plant Cell 9: 1317-1326.
2. Ballaré CL (1999) Keeping up with the neighbours: phytochrome sensing and other signalling mechanisms. Trends Plant Sci 4: 97-102.
3. Ballaré CL, Sánchez RA, Scopel AL, Casal JJ, Ghersa CM (1987) Early detection of neighbour plants by phytochrome perception of spectral changes in reflected sunlight. Plant Cell Environ 10: 551-557.
4. Boccalandro HE, Rugnone ML, Moreno JE, Ploschuk EL, Serna L, Yanovsky MJ, Casal JJ (2009) Phytochrome B enhances photosynthesis at the expense of water-use efficiency in Arabidopsis. Plant Physiol 150: 1083-1092.
5. Brown DE, Rashotte AM, Murphy AS, Normanly J, Tague BW, Peer WA, Taiz L, Muday GK (2001) Flavonoids act as negative regulators of auxin transport in vivo in Arabidopsis. Plant Physiol 126: 524-535.
6. Bruce RJ, West CA (1989) Elicitation of lignin biosynthesis and isoperoxidase activity by pectic fragments in suspension cultures of castor bean. Plant Physiol 91: 889-897.
7. Casal JJ (2012) Shade avoidance. The Arabidopsis Book 10: e0157, doi/ 0110.1199/tab.0157.
8. Casal JJ, Sánchez RA, Boylan M, Vierstra RD, Quail PH (1995) Is the far-red-absorbing form of Avena phytochrome A that is present at the end of the day able to sustain stem-growth inhibition during the night in transgenic tobacco and tomato seedlings? Planta 197: 225-232.
9. Casal JJ, Smith H (1988) Persistent effects of changes in phytochrome status on internode growth in light-grown mustard: occurrence, kinetics and locus of perception. Planta 175: 214-220.
10. Casal JJ, Smith H (1989) The function, action and adaptive significance of phytochrome in light-grown plants. Plant Cell Environ 12: 855-862.
11. Clarke JD, Zhu T (2006) Microarray analysis of the transcriptome as a stepping stone towards understanding biological systems: practical considerations and perspectives. Plant J 45: 630-650.
12. Devlin PF, Yanovsky MJ, Kay SA (2003) A genomic analysis of the shade avoidance response in Arabidopsis. Plant Physiol 133: 1617-1629.
13. Feys BJF, Benedetti CE, Penfold CN, Turner JG (1994) Arabidopsis mutants selected for resistance to the phytotoxin coronatine are male sterile, insensitive to methyl jasmonate, and resistant to a bacterial pathogen. Plant Cell 6: 751-759.
14. Finlayson SA, Lee IJ, Morgan PW (1998) Phytochrome B and the regulation of circadian ethylene production in sorghum. Plant Physiol 116: 17-25.
15. Finlayson SA, Lee IJ, Mullet JE, Morgan PW (1999) The mechanism of rhythmic ethylene production in sorghum: the role of phytochrome B and simulated shading. Plant Physiol 119: 1083-1089.
16. Franklin KA, Whitelam GC (2005) Phytochromes and shade-avoidance responses in plants. Ann Bot (Lond) 96: 169-175.
17. Gerhardt KE, Lampi MA, Greenberg BM (2008) The effects of far-red light on plant growth and flavonoid accumulation in Brassica napus in the presence of ultraviolet B radiation. Photochem Photobiol 84: 1445-1454.
18. González CV, Ibarra SE, Piccoli PN, Botto JF, Boccalandro HE (2012) Phytochrome B increases drought tolerance by enhancing ABA sensitivity in Arabidopsis thaliana. Plant Cell Environ (in press).
19. He Y, Fukushige H, Hildebrand DF, Gan S (2002) Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence. Plant Physiol 128: 876-884.
20. Hetherington SE, Smillie RM, Davies WJ (1998) Photosynthetic activities of vegetative and fruiting tissues of tomato. J Exp Bot 49: 1173-1181.
21. Hornitschek P, Kohnen MV, Lorrain S, Rougemont J, Ljung K, López-Vidriero I, Franco-Zorrilla JM, Solano R, Trevisan M, Pradervand S, et al (2012) Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. Plant J 71: 699-711.
22. Jeong ST, Goto-Yamamoto N, Kobayashi S, Esaka M (2004) Effects of plant hormones and shading on the accumulation of anthocyanins and the expression of anthocyanin biosynthetic genes in grape berry skins. Plant Sci 167: 247-252.
23. Keuskamp DH, Pollmann S, Voesenek LACJ, Peeters AJM, Pierik R (2010) Auxin transport through PIN-FORMED 3 (PIN3) controls shade avoidance and fitness during competition. Proc Natl Acad Sci USA 107: 22740-22744.
24. Kozuka T, Kobayashi J, Horiguchi G, Demura T, Sakakibara H, Tsukaya H, Nagatani A (2010) Involvement of auxin and brassinosteroid in the regulation of petiole elongation under the shade. Plant Physiol 153: 1608-1618.
25. Lewis DR, Ramirez MV, Miller ND, Vallabhaneni P, Ray WK, Helm RF, Winkel BSJ, Muday GK (2011) Auxin and ethylene induce flavonol accumulation through distinct transcriptional networks. Plant Physiol 156: 144-164.
26. Li C, Wong WH (2003) DNA-chip analyzer (dChip). In G Parmigiani, ES Garrett, R Irizarry, S Zeger, eds, The Analysis of Gene Expression Data: Methods and Software. Springer, New York, pp 120-141.
27. Li Y, Swaminathan K, Hudson ME (2011) Rapid, organ-specific transcriptional responses to light regulate photomorphogenic development in dicot seedlings. Plant Physiol 156: 2124-2140.
28. Lichtenthaler HK, Buschmann C (2001) Chlorophylls and carotenoids: measurement and characterization by UV-VIS spectroscopy. In R Wrolstad, ed, Current Protocols in Food Analytical Chemistry. John Wiley & Sons, New York, pp F4.3.1-F4.3.8.
29. López-Juez E, Dillon E, Magyar Z, Khan S, Hazeldine S, de Jager SM, Murray JAH, Beemster GTS, Bögre L, Shanahan H (2008) Distinct light-initiated gene expression and cell cycle programs in the shoot apex and cotyledons of Arabidopsis. Plant Cell 20: 947-968.
30. Ma L, Sun N, Liu X, Jiao Y, Zhao H, Deng XW (2005) Organ-specific expression of Arabidopsis genome during development. Plant Physiol 138: 80-91.
31. Mancinelli AL, Rossi F, Moroni A (1991) Cryptochrome, phytochrome, and anthocyanin production. Plant Physiol 96: 1079-1085.
32. Morelli G, Ruberti I (2002) Light and shade in the photocontrol of Arabidopsis growth. Trends Plant Sci 7: 399-404.
33. Moreno JE, Tao Y, Chory J, Ballaré CL (2009) Ecological modulation of plant defense via phytochrome control of jasmonate sensitivity. Proc Natl Acad Sci USA 106: 4935-4940.
34. Pierik R, Cuppens ML, Voesenek LA, Visser EJ (2004) Interactions between ethylene and gibberellins in phytochrome-mediated shade avoidance responses in tobacco. Plant Physiol 136: 2928-2936.
35. Robson F, Okamoto H, Patrick E, Harris SR, Wasternack C, Brearley C, Turner JG (2010) Jasmonate and phytochrome A signaling in Arabidopsis wound and shade responses are integrated through JAZ1 stability. Plant Cell 22: 1143-1160.
36. Sasidharan R, Chinnappa CC, Staal M, Elzenga JTM, Yokoyama R, Nishitani K, Voesenek LACJ, Pierik R (2010) Light quality-mediated petiole elongation in Arabidopsis during shade avoidance involves cell wall modification by xyloglucan endotransglucosylase/hydrolases. Plant Physiol 154: 978-990.
37. Schaller F, Hennig P, Weiler EW (1998) 12-Oxophytodienoate-10,11-reductase: occurrence of two isoenzymes of different specificity against stereoisomers of 12-oxophytodienoic acid. Plant Physiol 118: 1345-1351.
38. Scheer M, Grote A, Chang A, Schomburg I, Munaretto C, Rother M, Söhngen C, Stelzer M, Thiele J, Schomburg D (2011) BRENDA, the enzyme information system in 2011. Nucleic Acids Res 39: D670-D676.
39. Sessa G, Carabelli M, Sassi M, Ciolfi A, Possenti M, Mittempergher F, Becker J, Morelli G, Ruberti I (2005) A dynamic balance between gene activation and repression regulates the shade avoidance response in Arabidopsis. Genes Dev 19: 2811-2815.
40. Smith H (1982) Light quality, photoperception and plant strategy. Annu Rev Plant Physiol 33: 481-518.
41. Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci USA 100: 9440-9445.
42. Tao Y, Ferrer JL, Ljung K, Pojer F, Hong F, Long JA, Li L, Moreno JE, Bowman ME, Ivans LJ, et al (2008) Rapid synthesis of auxin via a new tryptophan-dependent pathway is required for shade avoidance in plants. Cell 133: 164-176.
43. Tegelberg R, Julkunen-Tiitto R, Aphalo PJ (2004) Red:far-red light ratio and UV-B radiation: their effects on leaf phenolics and growth of silver birch seedlings. Plant Cell Environ 27: 1005-1013.
44. Torres CA, Davies NM, Yañez JA, Andrews PK (2005) Disposition of selected flavonoids in fruit tissues of various tomato (Lycopersicon esculentum mill.) genotypes. J Agric Food Chem 53: 9536-9543.
45. Xu H-L, Gauthier L, Desjardins Y, Gosselin A (1997) Photosynthesis in leaves, fruits, stem and petioles of greenhouse-grown tomato plants. Photosynthetica 33: 113-123.