Comparison of indigenous and exogenous microbial populations during slurry phase biodegradation of long-term hydrocarbon-contaminated soil

Biodegradation

Volumn 23, Issue 6, 2012, Pages 813-822

  Aburto Medina, Arturo ^a,b   Adetutu, Eric M ^a   Aleer, Sam ^c,d   Weber, John ^c,d   Patil, Sayali S ^a,b   Sheppard, Petra J ^a,b   Ball, Andrew S ^a,b   Juhasz, Albert L ^c,d  

^a FLINDERS UNIVERSITY   (Australia)

^b RMIT UNIVERSITY   (Australia)

^c UNIVERSITY OF SOUTH AUSTRALIA   (Australia)

^d Cooperative Research Centre for Contamination Assessment of the Environment ^*  (Australia)

Author keywords

Activated sludge; Bioaugmentation; Hydrocarbons; Slurry phase bioremediation

Indexed keywords

BACTERIA; BIODEGRADATION; BIOREMEDIATION; BIOTECHNOLOGY; HYDROCARBONS; NATURAL ATTENUATION; NUTRIENTS; SOILS;

ACTIVATED SLUDGE; BIO-AUGMENTATION; ENHANCED NATURAL ATTENUATIONS; HYDROCARBON DEGRADATION; HYDROCARBON DEGRADING BACTERIA; MICROBIAL COMMUNITIES; MICROBIAL POPULATIONS; SLURRY PHASE;

SOIL POLLUTION;

ACTIVATED SLUDGE; BACTERIUM; BIODEGRADATION; BIOREMEDIATION; HYDROCARBON; INOCULATION; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; NATURAL ATTENUATION; POLLUTANT REMOVAL; SLURRY; SOIL POLLUTION; SOIL REMEDIATION;

AQUABACTERIUM; BACTERIA (MICROORGANISMS); BURKHOLDERIALES; HALISCOMENOBACTER; KLEBSIELLA;

EID: 84867068432     PISSN: 09239820     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10532-012-9563-8     Document Type: Article

References (39)

1. Aburto A, Fahy A, Coulon F, Lethbridge G, Timmis KN, Ball AS, McGenity TJ (2009) Mixed aerobic and anaerobic microbial communities in benzene-contaminated groundwater. J Appl Microbiol 106(1): 317-328.
2. Adetutu EM, Ball AS, Weber J, Aleer S, Dandie CE, Juhasz AL (2012a) Impact of bacterial and fungal processes on 14C-hexadecane mineralisation in weathered hydrocarbon contaminated soil. Sci Total Environ 414: 585-591. doi: 10. 1016/j. scitotenv. 2011. 11. 044.
3. Adetutu EM, Thorpe K, Shahsavari E, Bourne S, Cao X, Fard RMN, Kirby G, Ball AS (2012b) Bacterial community survey of sediments. Int J Speleol 41(20): 13-23.
4. Aleer S, Adetutu E, Makadia T, Patil S, Ball A (2011) Harnessing the hydrocarbon-degrading potential of contaminated soils for the bioremediation of waste engine oil. Water Air Soil Pollut 218(1): 121-130. doi: 10. 1007/s11270-010-0628-1.
5. Atlas MRP, Philp J (2005) Bioremediation applied microbial solutions for real-world environmental cleanup. ASM Press, Washington.
6. Bacosa H, Suto K, Inoue C (2010) Preferential degradation of aromatic hydrocarbons in kerosene by a microbial consortium. Int Biodeterior Biodegradation 64(8): 702-710. doi: 10. 1016/j. ibiod. 2010. 03. 008.
7. Bacosa H, Suto K, Inoue C (2011) Preferential utilization of petroleum oil hydrocarbon components by microbial consortia reflects degradation pattern in aliphatic-aromatic hydrocarbon binary mixtures. World J Microbiol Biotechnol 27(5): 1109-1117. doi: 10. 1007/s11274-010-0557-6.
8. Berlendis S, Lascourreges J-F, Schraauwers B, Sivadon P, Magot M (2010) Anaerobic biodegradation of BTEX by original bacterial communities from an underground gas storage aquifer. Environ Sci Technol 44(9): 3621-3628. doi: 10. 1021/es100123b.
9. Chamkha M, Trabelsi Y, Mnif S, Sayadi S (2011) Isolation and characterization of Klebsiella oxytoca strain degrading crude oil from a Tunisian off-shore oil field. J Basic Microbiol 51(6): 580-589. doi: 10. 1002/jobm. 201100073.
10. Chunyang Z, Xinglei L, Huiquan M, Guanling S, Guihua S, Zhongfeng D, Mingfeng L (2010) Klebsiella aquatica sp. nov., a novel PAH degrading bacterium from wastewater. In: E-product E-service and E-entertainment (ICEEE), 2010 international conference on, 7-9 Nov 2010, pp 1-4.
11. Daligault H, Lapidus A, Zeytun A, Nolan M, Lucas S, Glavina Del Rio T, Tice H, Cheng J-F, Tapia R, Han C, Goodwin L, Pitluck S, Liolios K, Liolios K, Pagani I, Ivanova N, Huntemann M, Mavromatis K, Mikhailova N, Pati A, Chen A, Palaniappan K, Land M, Hauser L, Brambilla E, Rohde M, Verberg S, Göker M, Bristow J, Eisen JA, Markowitz V, Hugenholtz P, Kyrpides NC, Klenk H-P, Woyke T (2011) Complete genome sequence of Haliscomenobacter hydrossis type strain (O T) Stand. Genomic Sci 4(3): 352-360. doi: 10. 4056/sigs. 1964579.
12. Dandie CE, Weber J, Aleer S, Adetutu EM, Ball AS, Juhasz AL (2010) Assessment of five bioaccessibility assays for predicting the efficacy of petroleum hydrocarbon biodegradation in aged contaminated soils. Chemosphere 81(9): 1061-1068. doi: 10. 1016/j. chemosphere. 2010. 09. 059.
13. Deeb RA, Hu HY, Hanson JR, Scow KM, Alvarez-Cohen L (2001) Substrate interactions in BTEX and MTBE mixtures by an MTBE-degrading isolate. Environ Sci Technol 35(2): 312-317.
14. Fahy A, Lethbridge G, Earle R, Ball AS, Timmis KN, McGenity TJ (2005) Effects of long-term benzene pollution on bacterial diversity and community structure in groundwater. Environ Microbiol 7(8): 1192-1199.
15. Filali BK, Taoufik J, Zeroual Y, Dzairi FZ, Talbi M, Blaghen M (2000) Waste water bacterial isolates resistant to heavy metals and antibiotics. Curr Microbiol 41(3): 151-156. doi: 10. 1007/s0028400.
16. Girvan MS, Bullimore J, Pretty JN, Osborn AM, Ball AS (2003) Soil type is the primary determinant of the composition of the total and active bacterial community in arable soils. Appl Environ Microbiol 69: 1800-1809.
17. Juteau P, Bisaillon J-G, Lépine F, Ratheau V, Beaudet R, Villemur R (2003) Improving the biotreatment of hydrocarbons-contaminated soils by addition of activated sludge taken from the wastewater treatment facilities of an oil refinery. Biodegradation 14(1): 31-40. doi: 10. 1023/a: 1023555616462.
18. Masuda H (2009) Identification and characterization of monooxygenase enzymes involved in 1, 4-dioxane degradation in Pseudonocardia sp. strain ENV478, Mycobacterium sp. strain ENV421, and Nocardia sp. strain ENV425, Dissertation. The State University of New Jersey.
19. McDonald RC, Isbell RF, Speight JC, Walker J, Hopkins MS (1990) Australian soil and land survey field handbook, 2nd edn. Inkata Press, Melbourne, Australia.
20. Muñoz-Castellanos LN, Torres-Muñoz JV, Keer-Rendón A, Manzanares-Papayanopoulos LI, Nevárez-Moorillón GV (2006) Aerobic biodegradation of methyl tert-butyl ether (MTBE) by pure bacterial cultures isolated from contaminated soil. World J Microbiol Biotechnol 22(8): 851-855. doi: 10. 1007/s11274-005-9114-0.
21. Muyzer G (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
22. Nakatsu CH, Hristova K, Hanada S, Meng X-Y, Hanson JR, Scow KM, Kamagata Y (2006) Methylibium petroleiphilum gen. nov., sp. nov., a novel methyl tert-butyl ether-degrading methylotroph of the Betaproteobacteria. Int J Syst Evol Microbiol 56(5): 983-989. doi: 10. 1099/ijs. 0. 63524-0.
23. Pérez-Pantoja D, Donoso R, Agulló L, Córdova M, Seeger M, Pieper DH, González B (2011) Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales. Environ Microbiol 14(5): 1091-1117. doi: 10. 1111/j. 1462-2920. 2011. 02613. x.
24. Rayment GE, Higginson FR (1992) Australian laboratory handbook of soil and water chemical methods. Inkata Press, Melbourne.
25. Redmond MC, Valentine DL (2011) Natural gas and temperature structured a microbial community response to the deepwater horizon oil spill. Proc Natl Acad Sci USA. doi: 10. 1073/pnas. 1108756108.
26. Rodrigues DF, Sakata SK, Comasseto JV, Bícego MC, Pellizari VH (2009) Diversity of hydrocarbon-degrading Klebsiella strains isolated from hydrocarbon-contaminated estuaries. J Appl Microbiol 106(4): 1304-1314. doi: 10. 1111/j. 1365-2672. 2008. 04097. x.
27. Schulz S, Giebler J, Chatzinotas A, Wick LY, Fetzer I, Welzl G, Harms H, Schloter M (2012) Plant litter and soil type drive abundance, activity and community structure of alkB harbouring microbes in different soil compartments. ISME J. doi: http://www. nature. com/ismej/journal/vaop/ncurrent/suppinfo/ismej201217s1. html.
28. Sheppard PJ, Adetutu EM, Makadia TH, Ball AS (2011) Microbial community and ecotoxicity analysis of bioremediated, weathered hydrocarbon-contaminated soil. Aust J Crop Sci 49 (3): 261-269. doi: http://dx. doi. org/10. 1071/SR10159.
29. Tellez GT, Nirmalakhandan N, Gardea-Torresdey JL (2002) Performance evaluation of an activated sludge system for removing petroleum hydrocarbons from oilfield produced water. Adv Environ Res 6(4): 455-470. doi: 10. 1016/s1093-0191(01)00073-9.
30. Tyagi M, da Fonseca M, de Carvalho C (2011) Bioaugmentation and biostimulation strategies to improve the effectiveness of bioremediation processes. Biodegradation 22(2): 231-241. doi: 10. 1007/s10532-010-9394-4.
31. van der Zaan BM, Talarico Saia F, Stams AJM, Plugge CM, de Vos WM, Smidt H, Langenhoff AAM, Gerritse J (2012) Anaerobic benzene degradation under denitrifying conditions: Peptococcaceae as dominant benzene degraders and evidence for a syntropic process. Environ Microbiol. doi: 10. 1111/j. 1462-2920. 2012. 02697. x.
32. van Stempvoort DR, Millar K, Lawrence JR (2009) Accumulation of short-chain fatty acids in an aquitard linked to anaerobic biodegradation of petroleum hydrocarbons. Appl Geochem 24(1): 77-85. doi: 10. 1016/j. apgeochem. 2008. 11. 004.
33. Vogel TM (1996) Bioaugmentation as a soil bioremediation approach. Curr Opin Biotechnol 7(3): 311-316.
34. Watanabe K, Hino S, Takahashi N (1996) Effects of exogenous phenol-degrading bacteria on performance and ecosystem of activated sludge. J Ferment Bioeng 82(3): 291-298.
35. Weiner JM, Lovley DR (1998) Anaerobic benzene degradation in petroleum-contaminated aquifer sediments after inoculation with a benzene-oxidizing enrichment. Appl Environ Microbiol 64(2): 775-778.
36. Winderl C, Penning H, Netzer F, Meckenstock RU, Lueders T (2010) DNA-SIP identifies sulfate-reducing Clostridia as important toluene degraders in tar-oil-contaminated aquifer sediment. ISME J 4(10): 1314-1325.
37. Zeng X, Xiao X, Wang F (2010) Response of bacteria in the deep-sea sediments and the Antarctic soils to carbohydrates: effects on ectoenzyme activity and bacterial community. J Environ Sci 22(11): 1779-1785. doi: 10. 1016/s1001-0742(09)60319-3.
38. Zhang S-Y, Wang Q-F, Wan R, Xie S-G (2011) Changes in bacterial community of anthracene bioremediation in municipal solid waste composting soil. J Zhejiang Univ Sci B 12(9): 760-768. doi: 10. 1631/jzus. B1000440.
39. Zhao X, Wang Y, Ye Z, Borthwick AGL, Ni J (2006) Oil field wastewater treatment in biological aerated filter by immobilized microorganisms. Process Biochem 41(7): 1475-1483. doi: 10. 1016/j. procbio. 2006. 02. 006.